Papers benefiting from the LSU Collection of Genetic Resources, 1994-2004 Herpetology Abreu-Grobois, F.A., A.L. Bass, R.B. Duenas, P.H. Dutton, S.E. Encalada, and N.N. Fitzsimmons. 1996. Mitochondrial DNA d-loop sequences of marine turtles. Marine Turtle Genetics Symposium Proceedings, Miami, FL, Pp. 147-162 In Bowen, B.W. and W.N. Witzell (eds.) Proceedings of the International Symposium on Sea Turtle Conservation Genetics. NOAA Tech. Mem. NMFS-SEFSC-396. 173 pp. Abreu-Grobois, F.A., A.L. Bass, P.H. Dutton, and S.E. Encalada. 1996. PCR-RFLP analysis of sea turtle populations in the era of DNA. Marine Turtle Genetics Symposium Proceedings Miami, FL, Pp. 55-68 In Bowen, B.W. and W.N. Witzell (eds.) Proceedings of the International Symposium on Sea Turtle Conservation Genetics NOAA Tech. Mem. NMFS-SEFSC-396. 173 pp. Anderson, R. E. 1996. Biochemical Systematics of Coluber constrictor. M.S. Thesis, Southeastern Louisiana University, Hammond, LA. Bass, A.L., D.A. Good, K.A. Bjorndal, J.I. Richardson, Z.-M. Hillis, J.A. Horrocks, and B.W. Bowen. 1996. Testing models of female migratory behavior and population structure in the Caribbean hawksbill turtle, Eretmochelys imbricata, with mtDNA control region sequences. Molecular Ecology, 5:321-328. Bass, A.L. 1999. Genetic analysis to elucidate the natural history and behavior of hawksbill turtles (Eretmochelys imbricata) in the wider Caribbean: a review and re-analysis. Chelonian Conservation and Biology 3(2):195-199. Bauer, A.M., Branch, W.R., and D.A. Good. 1996. A new species of rock-dwelling Phyllodactylus (Squamata: Gekkonidae) from the Richtersveld, South Africa. Occ. Pap. Mus. Nat. Sci. Louisiana St. Univ. 71:1-13. Bauer AM, and Good DA. 1996. Phylogenetic systematics of the day geckos, genus Rhoptropus (Reptilia: Gekkonidae), of south-western Africa. J ZOOL 238: 635-663 Part 4 APR 1996. Bauer, A.M., Good, D.A., and Branch, W.R. 1997. The taxonomy of the southern African leaftoed geckos (Squamata: Gekkonidae), with a review of Old World "Phyllodactylus" and the description of five new genera. Proc. Calif. Acad. Sci. 49:447-497. Bowen, B.W., A.L. Bass, A. Garcia, C.E. Diez, R. van Dam, K.A. Bjorndal, A. Bolten, M. Myamoto, R. Ferl. 1996. Origin of hawksbill turtles in a Caribbean feeding area as indicated by genetic markers. Ecological Applications, 6(2):566-572. Branch, W.R., A.M. Bauer and D.A. Good. 1995. Species limits in the Phyllodactylus lineatus complex (Reptilia: Gekkonidae), with the elevation of two taxa to specific status and the description of two new species. J. Herpetol. Assoc. Afr. 44:33-54. Branch WR, Bauer AM, Good DA. 1996. A review of the Namaqua gecko, Pachydactylus namaquensis (Reptilia: Gekkonidae) from southern Africa, with the description of two new species. S AFR J ZOOL 31: (2) 53-69 APR 1996. Burbrink, F. T. 2000. Systematics of the polymorphic North American rat snake (Elaphe obsoleta). Ph.D. Dissertation, Louisiana State University, Baton Rouge, Louisiana. Burbrink, F. T. 2001. Systematics of the Eastern Ratsnake Complex (Elaphe obsoleta). Herpetological Monographs 15:1-53. Burbrink, F. T. 2002. Phylogeographic analysis of the cornsnake (Elaphe guttata) complex as inferred from maximum likelihood and Bayesian analyses. Mol Phyl Evol 25:465-476. Burbrink, F. T., R. Lawson, and J. B. Slowinski. 2000. Mitochondrial DNA phylogeography of the polytypic North American rat snake (Elaphe obsoleta): a critique of the subspecies concept. Evolution 54:2107-2118. Carlin, J. L. 1997. Morphological and genetic differentiation between long-tailed (Eurycea longicauda) and three-lined (E. guttolineata) salamanders (Caudata: Plethodontidae). Herpetologica 53(2): 206-217. Cole, J. C., H. C. Dessauer, C. R. Townsend, and M. G. Arnold. 1995. Kentropix borckianus (Squamata: Teiidae): A unisexual lizard of hybrid origin in the Guiana Region, South America. Amer. Mus. Novitates 3145:1-23. Cole, J. C., H. C. Dessauer. 1995. Unisexual lizards (Genus Cnemidophorus) of the Madrean Archipelago. Pp. 267-273 in L. F. DeBano, P. F. Ffaliott, A. Ortega-Rubio, G. J. Gottfried, R. H. Hamre, and C. B. Edminstere (Tech. Coordi.), Biodiversity and Management of the Madrean Archipelago: The Sky Islands of Southwestern United States and Northwestern Mexico. USDA Forest Service General Technical Report RMGRT-264, Fort Collins, CO. Creer, D. A., K. de Queiroz, T. R. Jackman, J. B. Losos, and A. Larson. 2001. Systematics of the Anolis roquet series of the southern Lesser Antilles. J. Herpetol. 35(3):428-441. Crother, B. I., and J. S. Thompson. 1998 Biochemical genetics of the disjunct populations of Nerodia floridana (Colubridae: Serpentes) Copeia 1998:715-719. Jorge da Silva, N., and J.W. Sites, Jr. 2001. Phylogeny of South American triad coral snakes (Elapidae: Micrurus) based on molecular characters. Herpetologica 57(1):1-22. Davis, L. M., T. C. Glenn, R. M. Elsey, I. L. Brisbin, W. E. Rhodes, H. C. Dessauer, and R. H. Sawyer. In press. Genetic structure of six populations of American alligators: A microsatellite analysis. Proc. 1998 Conference on Crocodilian Biology and Evolution, Brisbane, Australia. de Queiroz, A. and R. Lawson. 1994. Phylogenetic relationships of the garter snakes based on DNA sequence and allozyme variation. Biol. J. Linn. Soc. 53: 209-229. Dessauer, H. C., C. J. Cole, and C. R. Townsend. 2000. Hybridization among western whiptail lizards (Cnemidophorus tigris) in southwestern New Mexico: Population genetics, morphology, and ecology in three contact zones. Bull. Amer. Mus. Natur. Hist. in press. Dessauer, H. C., T. W. Roeder, C. J. Cole, and A. Knight. 1996. Rapid screening of DNA diversity using dot-blot technology and allele-specific oligonucleotides: Maternity of hybrids and unisexual clones of hybrid origin. Mol. Phyl. Evol. 6:366-372. Devitt, T. J. 2003. Systematics of the western lyresnake (Trimomrphodon biscutatus) complex: Implications for North and Middle American aridland biogeography. Louisiana State University, Baton Rouge, Louisiana. Feldman, C. R. 2000. Comparative Phylogeography of 3 squamate reptiles in California: Contia tenuis, Diadophis punctatus, and Elgaria multicarinata. Master's Thesis, San Francisco State University. Fitzgerald, L.A., J.A. Cook, and A.L. Aquino. 1999. The molecular phylogenetics and conservation of Tupinambis (Sauria: Teiidae). Copeia 1999 (4):894-905. Gergus, E.W.A. 1994. Systematics and biogeography of Bufo microscaphus (Anura: Bufonidae), with a preliminary report on B. americanus group phylogeny. M.S. thesis, San Diego State University. vii + 72 pp., 9 figures, 4 tables. Gergus, E.W.A. 1998. Systematics of the Bufo microscaphus complex: allozyme evidence. Herpetologica 54(3): 317-325. Glenn, T. C., L. M. Davis, H. C. Dessauer, R. M. Elsey, and R. H. Sawyer. Submitted. Multiple paternity within clutches of American Alligators. Copeia. Glenn, T. C., H. C. Dessauer, and M. J. Braun. 1998. Characterization of microsatellite DNA loci in American alligators Copeia 1998(3): 591-601. Glenn, T. C., W. Stephan, H. C. Dessauer, and M. J. Braun. 1996. Allelic diversity in alligator microsatellite loci is negatively correlated with GC content of flanking sequences and evolutionary conservation of PCR amplifiability. Molecular Biology and Evolution 13:1151-1154. STOPPED HERE! Good, D.A. and A.M. Bauer. 1995. Allozyme evidence for the affinities of the Namaqua day gecko, Phelsuma ocellata. J. Herpetol. Assoc. Afr. 44:1-9. Good, D.A., Bauer, A.M., and Branch, W.R. 1997. A new species of Phyllodactylus (Squamata: Gekkonidae) from the Karoo National Park, South Africa. Afr. J. Herpetol. 45 [1996]:4958. Good, D.A., Bauer, A.M., and Sadlier, R.A. 1997. Allozyme evidence for the phylogeny of the giant New Caledonian geckos (Squamata: Gekkonidae: Rhacodactylus), with comments on the status of R. leachianus henkeli. Aust. J. Zool. 45:317-330. Henderson, R. W., and S. B. Hedges. 1995. Origin of West Indian populations of the geographically widespread boa Corallus enydris inferred from mitochondrial DNA sequences. Mol. Phyl. Evol. 4:88-92. Jackman, T. R. A. Larson, K. de Queiroz, and J. B. Losos. 1999. Phylogenetic Relationships and Tempo of Early Diversification in Anolis Lizards. Syst. Biol. 48:254-285. Jorge da Silva, Jr., Nelson. 1995. Molecular systematics and evolution of venoms in the South American "triad" coral snakes (Micrurus, Elapidae). Ph.D. thesis, Department of Zoology, Brigham Young University, Provo, Utah. Jorge da Silva, Jr., N., and J.W. Sites, Jr. Phylogeny of South American triad coral snakes (Elapidae, Micrurus) based on molecular characters. Keogh, J. S. 1997. Phylogenetic Studies on Australo-Papuan Elapid Snakes Based on Morphology and DNA. Ph.D. Thesis. University of Sydney (Australia). Keogh, J. S. 1998. Molecular phylogeny of elapid snakes and a consideration of their biogeographic history. Biological Journal of the Linnean Society 63, 177-203. Keogh, J. S., Shine, R. and Donnellan, S. 1998. Phylogenetic relationships of terrestrial Australo-Papuan elapid snakes based on cytochrome b and 16S rRNA sequences. Molecular Phylogenetics and Evolution 10, 67-81. King, R. B. and R. Lawson. 1996. Sex linked inheritance of fumarate hydratase alleles in natricine snakes. J. Heredity 87:81-83. Lamb, T. and Bauer, A. 2000. Systematics of the Pachydactylus rugosus complex of southern African geckos (Squamata: Gekkonidae). African Zoology 35:in press. Lance, V. A., T. Cort, J. Masuoka, R. Lawson and P. Saltmna. 1995. Unusually high zinc concentrations in snake plasma, with observations on plasma zinc concentrations in lizards, turtles and alligators. J. Zool., Lond. 235: 577-585. Leaché, A. D. and T. W. Reeder (2002). Molecular systematics of the eastern fence lizard (Sceloporus undulatus): A comparison of parsimony, likelihood, and Bayesian approaches. Syst. Biol. 51: 44-68. Markezich, A. L., C. J. Cole, and H. C. Dessauer. 1997. The blue and green whiptail lizards (Squamata: Teiidae: Cnemidophorus) of the peninsula de Paraguana, Venezuela: Systematics, ecology, description of two new taxa, and relationships to whiptails of the Guianas. Amer. Mus. Natur. Hist. Novitates 3207:1-60. Orange, D. I. 1997. Comparative biogeography within and among four species of lizards in western North American deserts (Crotaphytidae: Crotaphytus bicinctores, C. Collaris, Gambelia wislizeni; Phrynosomatidae: Sceloporus magister. Biological Sciences. Las Vegas. University of Nevada, Las Vegas: 275pp. Pellegrino, K. C. M., M. T. Rodrigues, et al. 2001. A molecular perspective on the evolution of microteiid lizards (Squamata, Gymnophthalmidae), and a new classification for the family. J. Linn Soc. Lond 74:315-338. Reeder, T. W. 1995. Phylogenetic relationships among phrynosomatid lizards as inferred from mitochondrial ribosomal DNA sequences: Substitutional bias and the information content of transitions relative to transversions. Molecular Phylogenetics and Evolution 4: 203-222. Reeder, T. W., and J. J. Wiens. 1996. Evolution of the lizard family Phrynosomatidae as inferred from diverse types of data. Herpetological Monographs 10:43-84. Reeder, T. W., Charles J. Cole, and H. Dessauer. 2002. Phylogenetic relationships of Cnemidophorus (Squamata: Teiidae): A test of monophyly, re-evaluation of karyotypic evolution, and review of hybrid origins. American Museum Novitates 3365:1–61. Reeder, T. W., and R. R. Montanucci. 2001. A phylogenetic analysis of the horned lizard genus Phrynosoma (Phrynosomatidae): Evidence from mitochondrial DNA and morphology. Copeia 2001:309–323. Richmond, J. Q., and T. W. Reeder. 2002. Evidence for parallel ecological speciation in scincid lizards of the Eumeces skiltonianus species group (Squamata: Scincidae). Evolution 56:1498–1513. Schell, D. M., and T. M. Schwaner. 1999. Nitrogen isotope ratios and quick death in Tasmania. Abstract, Amer. Soc. Limnology and Oceanography, New Mexico 1-5 Feb. 1999. http://aslo.org/santafe99/abstracts/SS32TU0116S.html. Slowinski, J. B., and J. S. Keogh. 2000. Phylogenetic relationships of elapid snakes based on cytochrome b mtDNA sequences. Mol. Phylogen. Evol. 15:157-164. Slowinski, J. B., J. Boundy, and R. Lawson. In press. The phylogenetic relationships of Asian coral snakes (Elapidae: Calliophis and Maticora) based on morphological and molecular characters. Herpetologica. Thompson, J. S. 1994. Genetic Variation of the Allopatric Populations of the Florida Green Water Snake (Nerodia floridana) Through Allozyme Electrophoresis. M.S. Thesis, Southeastern Louisiana University, Hammond, LA. Vitt, L. J., J. P. Caldwell, P. A. Zani, and T. A. Titus. 1997. The role of habitat shift in the evolution of lizard morphology: evidence from tropical Tropidurus. Proc. Natl. Acad Sci. USA 94:3828-3832. Wiens, J. J., T. W. Reeder, and A. N. Montes De Oca. 1999. Molecular phylogenetics and evolution of sexual dichromatism among populations of the Yarrow's spiny lizard (Sceloporus jarrovii). Evolution 53:1884-1897. Wiens, J. J., and T. W. Reeder. 1997. Phylogeny of the spiny lizards (Sceloporus) based on molecular and morphological evidence. Herpetological Monographs 11:1-101. Wiens, J. J., and T. W. Reeder. 1995. Combining data sets with different numbers of taxa for phylogenetic analysis. Systematic Biology 44:548-558. Ornithology Aleixo, A. 2002. Molecular systematics and the role of the "varzea"-"terra-firme" ecotone in the diversification of Xiphorhynchus woodcreepers (Aves: Dendrocolaptidae). Auk 119:621=640. Aleixo, A. 2002. Molecular systematics, phylogeography, and population genetics of Xiphorhynchus (Aves: Dendrocolaptidae) in the Amazon basin. Biological Sciences. Ph.D. dissertation. Louisiana State University, Baton Rouge. Apanius, V.,Yorinks, N., Bermingham, E., and R.E. Ricklefs. In press. Island and taxon effects in the prevalance of blood parasites and activity of the immune system in Lesser Antillean birds. Ecology. Arctander, P. 1995. Comparison of a mitochondrial gene and a corresponding nuclear pseudogene. Proc. Roy. Soc. Lond. B 262;13-19. Arctander, P., and J. Fjeldså. 1994. Andean tapaculos of the genus Scytalopus (Aves, Rhinocryptidae): A study of speciation using DNA sequence data. Pp. 205-225 in V. Loeschcke, J. Tomiuk, and S. K. Jain (eds.), Conservation Genetics, Birkhäuser Verlag, Basel, Switzerland. Austin, J. J. 1996. Molecular phylogenetics of Puffinus shearwaters: Preliminary evidence from mitochondrial cytochrome b gene sequences. Mol. Phyl. Evol. 5:77-88. Avise, J. C. 1994. Molecular markers, natural history and evolution. Chapman and Hall, New York, New York. (Several of Avise’s studies cited in this book used tissues supplied by LSU.) Avise, J.C. 2000. Phylogeography: The History and Formation of Species. Harvard University Press, Cambridge, Massachusetts. (Several of Avise’s studies cited in this book used tissues supplied by LSU.) Baltosser, W. H. and S. M. Russell. 1999. Black-chinned Hummingbird (Archilochus alexandri). In The Birds of North America (A. Poole and F. Gill, eds.). The Academy of Natural Sciences, Philadelphia, PA, and The American Ornithologists' Union, Washington, D.C. Barker, F.K. 1999. The evolution of cooperative breeding in Campylorhynchus wrens: A comparative approach. Ph.D. Dissertation, University of Chicago, Chicago, IL. Barker, F. K., and S. M. Lanyon. 2000. The impact of parsimony weighting schemes on inferred relationships among toucans and Neotropical barbets (Aves: Piciformes). Mol. Phyl. Evol. 15:215-234. Bates, J. M., S. J. Hackett, and J. M. Goerck. 1999. Mitochondrial DNA sequences reveal high levels of genetic differentiation in two lineages of antbirds (Dyrmophila and Hypocnemis). Auk 116: 1093-1106. Bates, J. M., and R. M. Zink. 1994. Evolution into the Andes: molecular evidence for species relationships in the genus Leptopogon. Auk 111:507-515. Bermingham, E., G. Seutin, and R. E. Ricklefs. 1996. Regional approaches to conservation biology: RFLPs, DNA sequences, and Caribbean birds. Pp. 104-124 in Smith T. B. and R. K. Wayne (eds.), Molecular Genetic Approaches in Conservation. Oxford University Press, NY. Brawn, J. D., T. M. Collins, M. Medina, and E. Bermingham. 1996. Effects of physical isolation on geographic variation within three species of neotropical birds. Molecular Ecology 5: 33-46. Brumfield, R. 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