Bibliography Related to DOC and THM Formation Potential
Special Focus on California Waters and Relevance to
Conceptual Model Development
January 17, 2005
1.
2.
3.
4.
5.
6.
7.
8.
9.
10.
11.
12.
13.
14.
15.
16.
17.
18.
Natomas east main drainage canal water quality investigation - initial technical report.
Submerged macrophytes in lakes. Springer, New York, New York.
Alber, M., and I. Valiela. 1994. Production of microbial organic aggregates from macrophyte-derived
dissolved organic material. Limnology and Oceanography 39:37-50.
Alpine, A. E., and J. Cloern. 1992. Trophic interactions and direct physical effects control
phytoplankton biomass and production in an estuary. Limnology and Oceanography 37:946-955.
Amy, G., R. Sierka, J. Bedessem, D. Price, and L. Tan. 1992. Molecular size distributions of dissolved
organic matter. Journal of the American Water Works Association 84:67-75.
Amy, G., J. Thompson, L. Tan, M. Davis, and S. Krasner. 1990. Evaluation of THM precursor
contributions from agricultural drains. Journal of the American Water Works Association 80:5764.
Anesion, A., L. Tranvik, and W. Graneli. 1999. Production of inorganic carbon from aquatic
macrophytes by solar radiation. Ecology 80:1852-1859.
Arthur, J., M. Ball, and S. Baughman. 1996. Summary of federal and state water project environmental
impacts in the San Francisco Bay-Delta Estuary. Pages 445-495 in J. Hollibaugh, editor. San
Francisco Bay: the ecosystem, further investigations into the natural history of San Francisco Bay
and Delta with reference to the influence of man. Pacific Division, AAAS, San Francisco,
California.
Atwater, B., S. Conard, J. Dowden, C. Hedel, R. McDonald, and W. Savage. 1979. History, landforms
and vegetation of the estuary's tidal marshes. Pages 347-385 in T. Conomos, editor. San Francisco
Bay: the urbanized estuary. Pacific Division, AAAS, San Francisco, California.
Bastardo, H. 1979. Laboratory studies on decomposition of littoral plants. Polskie Archiwum
Hydrobiologii 26:267-299.
Bennett, M., and P. Moyle. 1996. Where have all the fishes gone? Interactive factors producing fish
declines in the Sacramento-San Joaquin estuary. in J. Hollibaugh, editor. San Francisco Bay: the
ecosystem, further investigations into the natural history of the San Francisco Bay and Delta with
reference to the influence of man. Pacific Division, AAAS, San Francisco, California.
Bergamaschi, B. 1999. Dissolved organic carbon release from Delta wetlands: amounts, alterations,
and implications for drinking water quality and the Delta foodweb, part 1 - compositional
characteristics. Proposal 99D-123, CALFED Bay-Delta Program, Sacramento, California.
Bergamaschi, B., M. Fram, R. Fujii, G. Aiken, C. Kendall, and S. Silva. 2000. Trihalomethanes formed
from natural organic matter isolates: using isotopic and compositional data to help understand
sources. Pages 206-222 in S. Barrett, S. Krasner, and G. Amy, editors. Natural organic matter and
disinfection byproducts, characteriztion and control in drinking water. American Chemical
Society, Washington, DC.
Bergamaschi, B., M. Fram, C. Kendall, S. Silva, G. Aiken, and R. Fujii. 1999. Carbon isotopic
constraints on the contribution of plant material to the natural precursors of trihalomethanes.
Organic Geochemistry 30:835-842.
Bergamaschi, B., and R. Sonnerup. Assessment of baseline processes and trend in dissolved organic
carbon (DOC) and related parameters in the Sacramento-San Joaquin Delta and upstream
tributaries using historical data.
Boualam, M., S. Fass, S. Saby, V. Lahoussine, J. Cavard, D. Gatel, and L. Mathieu. 2003. Organic
matter quality and survival of coliforms in low-nutritive waters. Journal of the American Water
Works Association 95.
Boyer, E., G. Hornberger, K. Bencala, and D. McKnight. 2000. Effects of asynchronous snowmelt on
flushing of dissolved organic carbon: a mixing model approach. Hydrological Processes 14:32913308.
Brock, T. 1984. Aspects of the decomposition of Nymphoides peltata (Gmel.) O. Kuntze
(Menyanthaceae). Aquatic Botany 10:131-156.
Compiled by Tetra Tech, Inc., 3746 Mt. Diablo Blvd., Suite 300, California 94549.
1
19. Brown and Caldwell, Archibald and Wallberg Consultants, Marvin Jung and Associates, and McGuire
Environmental Consultants Inc. Study of drinking water quality in Delta tributaries. 34820,
California Urban Water Agencies.
20. Brown, L. 2003. Potential effects of organic carbon production on ecosystems and drinking water
quality. San Francisco Estuary and Watershed Science.
21. CALFED. 1998. Proposed comprehensive monitoring, assessment, and research program (CMARP)
for drinking water. Draft 5. CALFED.
22. CALFED Bay-Delta Program. 1999. Organic carbon drinking water quality workshop proceedings.
23. CALFED Bay-Delta Program. 2000. Water quality program plan.
24. CALFED Bay-Delta Program. 2001. CALFED Bay-Delta Program annual report. CALFED.
25. CALFED Science Program. 2002. Review of in-Delta storage program feasibility reports.
26. CALFED Science Program. 2003. Review of in-Delta storage program public workshop.
27. California Department of Water Resources (DWR). 2001. In-Delta storage program feasibility study
draft report on water quality investigations.
28. California Department of Water Resources (DWR). 2003. In-Delta storage program feasibility study
draft report on water quality investigations.
29. California Department of Water Resources (DWR), and Division of Environmental Services. 2003.
The municipal water quality investigations program summary and findings from data collected
August 1, 1998 to September 30, 2001. State of California.
30. California Department of Water Resources (DWR), and Division of Environmental Services. 2004.
The municipal water quality investigations program summary and findings from data collected
October 2001 through September 2003.
31. California Department of Water Resources (DWR), Division of Environmental Services, and O. o. W.
Quality. 2001. California state water project watershed sanitary survey update report. Municipal
water quality investigations program. California Department of Water Resources (DWR).
32. California Department of Water Resources (DWR), Division of Local Assistance, and Interagency
Delta Health Aspects Monitoring Program. The Delta as a source of drinking water: summary of
monitoring results 1983-1987.
33. California Department of Water Resources (DWR), Division of Local Assistance, and Water Quality
Assesment Branch. 1994. Five-year report of the municipal water quality investigations program,
summary and findings during five dry years, January 1987 - December 1991.
34. California Department of Water Resources (DWR), Division of Local Assistance, and Water Quality
Assesment Branch. 1995a. 1992-1993 Biennial memorandum report of the municipal water
quality investigations program.
35. California Department of Water Resources (DWR), Division of Local Assistance, and Water Quality
Assesment Branch. 1995b. Data report of the municipal water quality investigations program,
summary of monitoring results, water year 1994. California Department of Water Resources
(DWR).
36. California Department of Water Resources (DWR), Division of Local Assistance, and Water Quality
Assesment Branch. 1996. Municipal water quality investigations program annual report, water
year 1995.
37. California Department of Water Resources (DWR), Division of Local Assistance, and Water
Resources Assessment Program. 1990. Delta island drainage investigation report of the
interagency Delta health aspects monitoring program: a summary of observations during
consecutive dry year conditions, water years 1987 and 1988. California Department of Water
Resources (DWR).
38. California Department of Water Resources (DWR), Division of Operations and Maintenance, and
Water Quality Section. 1999. Water quality assessment of the Satet water project, 1996-1997.
39. California Department of Water Resources (DWR), Division of operations and Maintenance, and
Water Quality Section. 2002a. Water quality assessment of the Satet water project, 1998-1999.
40. California Department of Water Resources (DWR), and Division of Planning. 1995. Estimation of
Delta island diversions and return flows.
41. California Department of Water Resources (DWR), Division of Planning and Local Assistance, and S.
J. District. 2002b. San Joaquin Valley drainage monitoring program 1998.
Compiled by Tetra Tech, Inc., 3746 Mt. Diablo Blvd., Suite 300, California 94549.
2
42. California Department of Water Resources (DWR), Division of Planning and Local Assistance, and
Water Quality Assesment Branch. 1997. Municipal water quality investigations program annual
report, October 1995-December 1996.
43. California Department of Water Resources (DWR), Division of Planning and Local Assistance, and
Water Quality Assesment Branch. 2000. Municipal water quality investigations program annual
report, 1997-1998.
44. Canuel, E., and J. Cloern. 1996. Regional differences in the origins of organic matter in the San
Francisco Bay ecosystem. Pages 305-324 in J. Hollibaugh, editor. San Francisco Bay: the
ecosystem, further investigations into the natural history of San Francisco Bay and Delta with
reference to the influence of man. Pacific Division, AAAS, San Francisco, California.
45. Carpenter, S., F. Cole, J. Kitchell, and M. Pace. 1998. Impact of dissolved organic carbon, phosphorus,
and grazing on phytoplankton biomass and production in experimental lakes. Limnology and
Oceanography 43:73-80.
46. Chang, C.-N., A. Chao, F.-S. Lee, and F.-F. Zing. 2000. Influence of molecular weight distribution of
organic substances on the removal efficiency of DBPS in a conventional water treatment plant,
Membrane Technology in Environmental Management. Water Science & Technology 41:43-49.
47. Chow, A. T., and S. Gao. 2003. Isolation and characterization of organic disinfection by-product
precursors: current state of knowledge and studies in the Sacramento-San Joaquin Delta,
California. Contract 4600002056, California Department of Water Resources (DWR).
48. Chow, A. T., F. Guo, R. S. Breuer, S. Gao, and R. Dahlgren. 2004a. Pore size filter selection for
characterizing dissolved organic carbon and trihalomethane precursors from soils. Water Research
In revision.
49. Chow, A. T., F. Guo, S. Gao, and R. S. Breuer. 2004b. Fractionation and disinfection byproduct
reactivity of water- and alkaline-extractable soil organic carbon. Journal of Environmental Quality
In revision.
50. Chow, A. T., F. Guo, S. Gao, and R. S. Breuer. 2004c. Particulate, colloidal, and dissolved organic
trihalomethane precursors extractable from two soils by solutions of varying electrolytic
conductance. Journal of Environmental Quality In revision.
51. Chow, A. T., K. Tanji, and S. Gao. 2003. Production of dissolved organic carbon (DOC) and
trihalomethane (THM) precursor from peat soils. Water Research 37:4475-4485.
52. Cloern, J. 1987. Turbidity as a control on phytoplankton biomass and productivity in estuaries.
Continental Shelf Restoration 7.
53. Cloern, J. 1999. The relative importance of light and nutrient limitation of phytoplankton growth: a
simple index of coastal ecosystem sensitivity to nutrient enrichment. Aquatic Ecology 33:3-16.
54. Cloern, J. 2000. Basic science in support of ecosystem restoration: lessons from a research program
supported by CALFED category III. in 2000 CALFED Science Conference Session Notes,
Organic Carbon and Lower Trophic Level Processes.
55. Cloern, J. 2001. Transport, transformation, and effects of selenium and carbon in the Delta of the
Sacramento-San Joaquin rivers: implications for ecosystem restoration. Proposal 2001-F200,
CALFED.
56. Cloern, J., E. Canuel, and D. Harris. 2002. Stable carbon and nitrogen isotope composition of aquatic
and terrestrial plants of the San Francisco Bay estuarine system. Limnology and Oceanography 47.
57. Cole, B. E., and J. Cloern. 1984. Significance of biomass and light availability to phytoplankton
productivity in San Francisco Bay. Marine Ecology Progress Series 17.
58. Cole, B. E., and J. Cloern. 1987. An empirical model for estimating phytoplankton productivity in
estuaries. Marine Ecology Progress Series 36:299-305.
59. Cole, B. E., J. Cloern, and A. E. Alpine. 1986. Biomass and productivity of three phytoplankton size
classes in San Francisco Bay. Estuaries 9:117-126.
60. Dahlgren, R. Water quality-food resources dynamics in Central Valley rivers. Department of Land, Air
and Water Resources.
61. Davies, J., M. Roxborough, and A. Mazumder. 2004. Origins and implications of drinking water
odours in lakes and reservoirs of British Columbia, Canada. Water Research 38.
62. Denward, C., and L. Tranvik. 1998. Effects of solar radiation on aquatic macrophyte litter
decomposition. Oikos 82:51-58.
63. DiGiorgio, C. 2003. Modeled impacts of Delta peat island drainage on organic carbon levels at
selected Delta municipal water intakes. California Department of Water Resources (DWR).
Compiled by Tetra Tech, Inc., 3746 Mt. Diablo Blvd., Suite 300, California 94549.
3
64. DiGiorgio, C., and J. Pimental. 2002. Water quality investigations of the Barker Slough Watershed,
1997-2001. North Bay Aqueduct Summary. California Department of Water Resources (DWR).
65. Domagalski, J., D. Knifong, P. Dileanis, L. Brown, J. May, B. Connor, and C. Alpers. 2000. Water
quality in the Sacramento River Basin, California 1994-1998. Circular 1215, US Geological
Survey (USGS).
66. Eaton, A. 1995. Measuring UV-absorbing organics: a standard method. Journal of the American Water
Works Association:86-90.
67. Eisma, D. 1993. Suspended matter in the aquatic environment. Springer-Verlag.
68. Finlay, J. 2001. Stable-carbon-isotope ratios of river biota: implications for energy flow in lotic food
webs. Ecology 82:1052-1064.
69. Fleck, J., D. Bossio, and R. Fujii. 2004. Dissolved organic carbon and disinfection by=product
precursor release from managed peat soils. Journal of Environmental Quality 33:465-475.
70. Fram, M., B. Bergamaschi, and R. Fujii. 2001. Improving water quality in Sweetwater Reservoir, San
Diego County, California. Fact Sheet 112-01, US Geological Survey (USGS).
71. Fram, M., R. Fujii, J. Weishaar, B. Bergamaschi, and G. Aiken. 1999. How DOC composition may
explain the poor correlation between specific trihalomethane formation potential and specific UV
absorbance. US Geological Society toxic substances hydrology program, vol. 2: contamination of
hydrologic systems and related ecosystems. Pages 423-430 in D. Morganwalp and H. Buxton,
editors. Technical Meeting, May 8 to 12, 1999. US Geological Survey, Charleston, South
Carolina.
72. Fraser, C., N. Roulet, and T. Moore. 2001. Hydrology and dissolved organic carbon biogeochemistry
in and ombrotrphic bog. Hydrological Processes 15:3151-3166.
73. Fujii, R., B. Bergamaschi, and G. Aiken. Comparison of dissolved organic carbon concentrations and
composition, and trihalomethane formation potential in waters from three wetland habitat test
ponds.
74. Fujii, R., and et al. 2004. Improving Delta drinking water quality: managing sources of disinfection
byproduct-forming material in the state water project. Preliminary report.
75. Fujii, R., J. Ranalli, G. Aiken, and B. Bergamaschi. 1998. Dissolved organic carbon concentrations and
compositions, and trihalomethane formation potentials in waters from agricultural peat soils,
Sacramento-San Joaquin Delta, California: implications for drinking water quality. Water
Resources Investigation Report 98-4147, US Geological Survey (USGS).
76. Gamble, J., K. Burrow, G. Wheeler, R. Hilditch, and J. Drexler. 2003. Hydrogeologic data from a
shallow flooding demonstration project, Twitchell Island, California, 1997-2001. Open-file report
03-378, US Geological Survey (USGS).
77. Gao, S., and A. T. Chow. 2003. Progress report on collaborative project on carbon quality in soils of
the Sacramento-San Joaquin Delta. Contract 4600002056.
78. Gergel, S., M. Turner, and T. Kratz. 1994. Dissolved organic carbon as an indicator of the scale of
watershed influence on lakes and rivers. Ecological Applications 9:1377-1390.
79. Good, R., N. Good, and B. Frasco. 1982. A review of primary production and decomposition dynamics
of the below-ground marsh component. Pages 139-157 in V. Kennedy, editor. Estuarine
Comparisons. Academic Press, New York, New York.
80. Graneli, W., M. Lindell, and L. Tranvik. 1996. Photo-oxidative production of dissolved organic carbon
in lakes of different humic content. Limnology and Oceanography 41.
81. Harrison, P., and K. Mann. 1975. Detritus formation from eelgrass (Zostera marina L.): the relative
effects of fragmentation, leaching, and decay. Limnology and Oceanography 20:924-934.
82. Heip, C., H. Goosen, P. Herman, J. Kromkamp, J. Middelburg, and K. Soetaert. 1995. Production and
consumption of biological particles in temperate tidal estuaries. Oceanography and Marine
Biology Annual Review 33:1-149.
83. Hollibaugh, J., and P. Wong. 1996. Distribution and activity of bacterioplankton in San Francisco Bay.
in J. Hollibaugh, editor. San Francisco Bay: the ecosystem, further investigations into the natural
history of San Francisco Bay and Delta with reference to the influence of man. Pacific Division,
AAAS, San Francisco, California.
84. Hopkinson, C., G. Grosslink, and R. Parrondo. 1980. Production of coastal Louisiana marsh plants
calculated from phenometric techniques. Ecology 61:1091-1098.
85. Hutton, P., and F. Chung. 1994. Correlating trihalomethane data. Journal of Environmental
Engineering 120:219-241.
Compiled by Tetra Tech, Inc., 3746 Mt. Diablo Blvd., Suite 300, California 94549.
4
86. Hymanson, and D. Reed. 2000. Sacramento-San Joaquin Delta breached levee wetland study
(BREACH). Preliminary report. University of Washington, Seattle.
87. Jassby, A. D. 1992. Appendix A: Organic carbon sources for the food web of San Francisco Bay. in B.
Herbold, A. D. Jassby, and P. Moyle, editors. Status and trends report on aquatic resources in the
San Francisco Estuary. San Francisco Estuary Project, Oakland, California.
88. Jassby, A. D. 2001. Tahoe and the Delta: some fundamental differences in conservation and restoration
issues. Interagency Ecological Program Newsletter 14:18-22.
89. Jassby, A. D., and J. Cloern. 2000a. Organic matter sources and rehabilitation of the Sacramento-San
Joaquin Delta (California, USA). Aquatic Conservation: Marine and Freshwater Ecosystems
10:323-352.
90. Jassby, A. D., and J. Cloern. 2000b. Primary food resources in the Sacramento-San Joaquin Delta.
Interagency Ecological Program Newsletter 13.
91. Jassby, A. D., J. Cloern, and B. E. Cole. 2002. Annual primary production: patterns and mechanisms of
change in a nutrient-rich tidal ecosystem. Limnology and Oceanography 47:698-712.
92. Jassby, A. D., J. Cloern, and T. Powell. 1993. Organic carbon sources and sinks in San Francisco Bay:
variability induced by river flow. Marine Ecology Progress Series 95:39-54.
93. Jassby, A. D., J. Koseff, and S. Monismith. 1996. Processes underlying phytoplankton variability in
San Francisco Bay. in J. Hollibaugh, editor. San Francisco Bay: the ecosystem, further
investigations into the natural history of San Francisco Bay and Delta with reference to the
influence of man. Pacific Division, AAAS, San Francisco, California.
94. Jassby, A. D., and T. Powell. 1994. Hydrodynamic influences on long-term chlorophyll variability in
an estuary: upper San Francisco Bay-Delta (California, USA). Estuarine, Coastal, and Shelf
Science 39:595-618.
95. Jones and Stokes. 1990. Delta wetlands draft environmental impact report/environmental impact
statement.
96. Jones and Stokes. 1995. Delta wetlands draft environmental impact report/environmental impact
statement.
97. Jones and Stokes. 2000. Delta wetlands draft environmental impact report/environmental impact
statement.
98. Josselyn, M. 1983. The ecology of San Francisco Bay tidal marshes: a community profile. FWS/OBS83/23, US Fish and Wildlife Service,
99. Division of Biological Services,, Washington, DC.
100. Kaplan, L. A. 2000. Comparison of three TOC methodologies. Journal of the American Water Works
Association 92.
101. Karanfil, T., M. Schlautman, and I. Erdogan. 2002. Survey of DOC and UV measurement practices
with implications for SUVA determination. Journal of the American Water Works Association
94:68-80.
102. Kevin Wolf & Associates. 2002. San Joaquin River dissolved oxygen total maximum daily load
stakeholder process.
103. Kimmerer, W., E. Gartside, and J. Orsi. 1994. Predation by and introduced clam as the probably cause
of substantial declines in zooplankton in San Francisco Bay. Marine Ecology Program Series
113:81-93.
104. Kimmerer, W., and J. Orsi. 1996. Changes in the zooplankton of the San Francisco Bay estuary since
the introduction of the asian clam Potamorcorbula amurensis. Pages 403-424 in J. Hollibaugh,
editor. San Francisco Bay: the exosystem, further investigations into the natrual history of San
Francisco Bay and Delta with reference to the influence of man. Pacific Division, AAAS, San
Francisco, California.
105. Kitis, M., J. Kilduff, and T. Karanfil. 2001. Isolation of dissolved organic matter (DOM) from surface
waters using reverse osmosis and its impact on the reactivity of DOM to formation and speciation
of disinfection by-products. Water Research 35:2225-2234.
106. Krasner, S., J. Croue, J. Buffle, and E. Perdue. 1996. Three approaches for characterization NOM.
American Water Works Association.
107. Krasner, S., M. Sclimenti, and E. Means. 1994. Quality in degradation: implications for DBP
formation. American Water Works Association (AWWA).
108. Kratzer, C., P. Dileanis, C. Zamora, S. Silva, C. Kendall, B. Bergamaschi, and R. Dahlgren. 2004.
Sources and transport of nutrients, organic carbon, and chlorophyll-a in the San Joaquin River
Compiled by Tetra Tech, Inc., 3746 Mt. Diablo Blvd., Suite 300, California 94549.
5
upstream of Vernalis, California, during summer and fall, 2000 and 2001. Water Resources
Investigations Report 03-4127, US Geological Survey (USGS).
109. Kromkamp, J., J. Peene, P. Van Rijswijk, A. Sandee, and N. Goosen. 1995. Nutrients, light and
primary production by phytoplankton and microphytobenthos in the eutrophic, turbid
Westerschelde estuary. Hydrobiologia 311:9-19.
110. Lehman, P. 1999. Determination of the causes of oxygen depletion in the San Joaquin River. Proposal
D-119 to the CALFED Ecosystem Restoration Program, CALFED Bay-Delta Program,
Sacramento, California.
111. Long, S., and C. Mason. 1983. Saltmarsh Ecology. Blackie & Son, Glasgow, Scotland.
112. Losee, R., and R. Wetzel. 1993. Littoral flow rates within and around submersed macrophyte
communities. Freshwater Biology 29:7-17.
113. Lucas, L., J. Cloern, J. Thompson, and N. Monsen. 2002. Functional variability of shallow tidal
habitats in the Sacramento-San Joaquin Delta: restoration implications. Ecological Applications
12:1528-1547.
114. Mahall, B., and R. Park. 1976. The ecotone between Spartina foliosa Trin. and Salicornia virginica L.
in salt marshes of northern San Francisco Bay, part I: biomass and production. Journal of Ecology
64:421-433.
115. Mann, K. 1998. Productivity and use of detritus in various freshwater, estuarine, and coastal marine
ecosystems. Limnology and Oceanography 33:910-930.
116. Marvin Jung and Associates, and M. Jung. 2000. Revision of representative delta island return quality
for DSM2 and DICU model runs.
117. Marvin Jung and Associates, M. Jung, and Q. Tran. 1999a. Candidate delta regions for treatment to
reduce organic carbon loads. Consultant's report to the Department of Water Resources municipal
water quality investigations program. California Department of Water Resources (DWR),.
118. Marvin Jung and Associates, M. Jung, and L. Weisser. 1999b. A trial experiment on studying shortterm water quality changes in flooded peat soil environments.
119. Marvin Jung and Associates, M. Jung, and L. Weisser. 2002. Final report on experiment #2: seasonal
water quality changes in flooded peat soil environments due to peat soil, water depth, and water
exchange rate.
120. Meyer, J., and C. Tate. 1983. The effects of watershed disturbance on dissolved organic carbon
dynamics of a stream. Ecology 64:33-44.
121. Molot, L., and P. Dillon. 1997. Photolytic regulation of dissolved organic carbon in northern lakes.
Global Biogeochemical Cycles 11:357-365.
122. Mueller-Solger, A., A. D. Jassby, and M.-N. DC. 2002. Nutritional quality of food resources for
zooplankton (Daphnia) in a tidal freshwater system (Sacramento-San Joaquin River Delta).
Limnology and Oceanography 47:1468-1476.
123. Murrell, M., and J. Hollibaugh. 1998. Microzooplankton grazing in northern San Francisco Bay
measured by the dilution method. Aquatic Microbial Ecology 15:53-63.
124. Murrell, M., and J. Hollibaugh. 2000. Distribution and composition of dissolved and particulate
organic carbon in northern San Francisco Bay during low flow conditions. Estuarine, Coastal, and
Shelf Science 51:75-90.
125. Orr, M., S. Crooks, and P. Williams. 2003. Will restored tidal marshes be sustainable? Issues in San
Francisco Estuary tidal wetlands restoration. San Francisco Estuary and Watershed Science
1:Article 5.
126. Orsi, J., and W. Mecum. 1996. Food limitation as the probably cause of and long-term decline in the
abundance of Neomysis mercedis, the oposhrimpshrip, in the Sacramento-San Joaquin estuary.
Pages 375-402 in J. Hollibaugh, editor. San Francisco Bay: the ecosystem, further investigations
into the natural history of San Francisco Bay and Delta with reference to the influence of man.
Pacific Division, AAAS, San Francisco, California.
127. Pandey, G. 2001. Chapter 3: Simulation of historical DOC and UVA conditions in the Delta. in
Methodology for flow and salinity estimates in the Sacramento-San Joaquin Delta and Suisun
Marsh.
128. Polunin, N. 1982. Processes contributing to the decay of read (Phragmites australis) litter in fresh
water. Archiv Hydrobiologica 94:182-209.
129. Pomes, M., C. Larive, E. Thurman, W. Green, W. Orem, C. Rostad, T. Coplen, B. Cutak, and A.
Dixon. 2000. Sources and haloacetic acid/trihalomethan formation potentials of aquatic humic
Compiled by Tetra Tech, Inc., 3746 Mt. Diablo Blvd., Suite 300, California 94549.
6
substances in the Wakarusa River and Clinton Lake near Lawrence, Kansas. Environmental
Science & Technology 34:4278-4286.
130. Reckow, D., and P. Singer. 1990. Chlorination by-products in drinking waters: from formation
potentials to finished water concentrations. American Water Works Association.
131. Rostad, C., B. Martin, L. Barber, J. Leenheer, and S. Daniel. 2000. Effect of a constructed wetland on
disinfection byproducts: Removal processes and production of precursors. Environmental Science
& Technology 34:2703-2710.
132. Saleh, D., J. Domagalski, C. Kratzer, and D. Knifong. 2003. Organic carbon trends, loads, and yields
to the Sacramento-San Joaquin Delta California, Water years 1980-2000. Water Resources
Investigations Report 98-4147, US Geological Survey.
133. Schemel, L., S. Hager, and D. Childers Jr. 1996. The supply and carbon content of suspended sediment
from the Sacramento River to the San Francisco Bay. Pages 437-460 in J. Hollibaugh, editor. San
Francisco Bay: the ecosystem, further investigations into the natural history of San Francisco Bay
and Delta with reference to the influence of man. Pacific Division, AAAS, San Francisco, CA.
134. Schoellhamer, D., N. Ganju, B. Bergamaschi, E. Boss, and D. Reed. 2001. Dissolved organic carbon
release from Delta wetlands: amounts, alterations, and implications fro drinking water quality and
the Delta foodweb; Part II - Fluxes and loads from tidal and non-tidal wetlands and from
agricultural operations. Progress report. CALFED.
135. Sickman, J. 2002. Determining the contribution of riverine, in-Delta, and aqueduct sources of organic
carbon to loads in the State Water Project using AMS carbon dating and stable isotope
characteristics. Funded 2002 CALFED Proposal, CALFED Bay-Delta Program, Sacramento,
California.
136. Sickman, J., D. Gonzales, B. Montoya, and S. San Julian. Real-time monitoring of organic carbon in
the Sacramento-San Joaquin Delta. in California Department of Water Resources (DWR), editor.
Source and Fate of DOC in Delta Water.
137. Smith, C., and J. Barko. 1990. Ecology of Eurasian watermilfoil. Journal of Aquatic Plant
Management 28:55-64.
138. Sobczak, W., J. Cloern, A. D. Jassby, B. E. Cole, T. Schraga, and A. Arnsberh. 2004. Detritus fuels
ecosystem metabolism but not metazoan food webs in San Francisco Estuary's freshwater delta.
Estuaries.
139. Sobczak, W., J. Cloern, A. D. Jassby, and A. Mueller-Solger. 2002. Bioavailability of organic matter in
a highly disturbed estuary: the role of detrital and algal resources. Proceedings of the National
Academy of Sciences of the United States of America 99:8101-8105.
140. State Water Resources Control Board (SWRCB), Department of Health Services, and D. o. W.
Resources. 1991. Delta Water Quality: A report to the legislature on trihalomethanes and the
quality of drinking water available from the Sacramento San Joaquin Delta. SWRCB.
141. Stepanauskas, R., M. A. Moran, B. Bergamaschi, and J. Hollibaugh. 2003. Covariance of
bacterioplankton composition and environmental variables in a temperate delta system. Aquatic
Microbial Ecology.
142. Suits, B. 2002. Chapter 7: generating monthly dissolved organic carbon and UVA at DSM2
boundaries. in Methodology for flow and salinity estimates in the Sacramento-San Joaquin Delta
and Suisun Marsh.
143. Sundh, I., and R. Bell. 1992. Extracellular dissolved organic carbon released from phytoplankton as a
source of carbon for heterotrophic bacteria in lakes of different humic content. Hydrobiologia
229:93-106.
144. Teuschler, L. K., G. E. Rice, and J. C. Kipscomb. 1999. Developing approaches to estimate cumulative
risks of drinking water contaminants. US Environmental Protection Agency Office of Research
and Development.
145. Trulleyova, S., and M. Rulik. 2004. Determination of biodegradable dissolved organic carbon in
waters: comparison of batch methods. Science of the Total Environment.
146. United States Environmental Protection Agency (USEPA). 1998. National primary drinking water
regulations, disinfectants and disinfection byproducts, final rule. 40 CFR parts 9,141, and 142.
Federal Register 63:69390-69476.
147. Vant, W., R. Davies-Colley, J. Clayton, and B. Coffey. 1986. Macrophyte depth limits in North Island
(New Zealand) lakes of differing clarity. Hydrobiologia 137:55-60.
Compiled by Tetra Tech, Inc., 3746 Mt. Diablo Blvd., Suite 300, California 94549.
7
148. Weishaar, J., G. Aiken, B. Bergamaschi, M. Fram, R. Fujii, and K. Mopper. 2003. Evaluation of
specific ultraviolet absorbance as an indicator of the chemical composition and reactivity of
dissolved organic carbon. Environmental Science & Technology.
149. Weiss, W., E. Bouwer, W. Ball, C. O'Melia, M. LeChevallier, H. Arora, and T. Speth. 2003. Riverbank
filtration - fate of DBP precursors and selected microorganisms. Journal of the American Water
Works Association 95.
150. Wetzel, R., and M. Sondergaard. 1998. Role of submerged macrophytes for the microbial community
and dynamics of dissolved organic carbon in aquatic ecosystems. in E. Jeppesen and e. al., editors.
The structuring role of submerged macrophytes in lakes. Springer, New York, New York.
151. Woodard, R. 2000. Sources and magnitudes of water quality constituents of concern in drinking water
supplies taken from the Sacramento-San Joaquin Delta. Review draft.
152. Woodard, R. 2001. Sources and magnitudes of water quality constituents of concern in drinking water
supplies taken from the Sacramento-San Joaquin Delta. USGS Technical progress report.
CALFED.
153. Yelverton, G., and C. Hackney. 1986. Flux of dissolved organic carbon and pore water through the
substrate of a Spartina alterniflora marsh in North Carolina. Estuarine, Coastal, and Shelf Science
22:255-267.
154. Zedler, J. 1982. The ecology of Southern California saltmarshes: a community profile. FWS/OBS81/54, US Fish and Wildlife Service. Division of Biological Services, Washington, DC.
Compiled by Tetra Tech, Inc., 3746 Mt. Diablo Blvd., Suite 300, California 94549.
8