Applying new inter-individual approaches to assess fine

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Titles and Legend to Supplementary Figures
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Supp. Figure 1. Correlogram of microsatellite genotype spatial autocorrelation
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across 20 distance classes (in metres), with error bars developed from
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bootstrapping and a 95% confidence interval about the null hypothesis. Error
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bars that do not overlap 0 and/or calculated r outside of the confidence
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bounds indicate significant spatial-genetic structure.
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Supp. Figure 2. Kinship estimator Ritland (1996) (FR) plotted against the
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logarithm of geographic distance (in metres). A test of the slope of the linear
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regression line (rR) indicates a significant relationship between kinship and
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geographic distance.
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Supp. Figure 3. Relationship estimator Moran’s-I (RM) plotted against the
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logarithm of geographic distance (in metres). A test of the slope of the
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regression line (rM) indicates a significant relationship between Moran’s-I and
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geographic distance.
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Supp. Figure 4. A graph of increasing cumulative distance classes from 400
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to 5200 m and the spatial autocorrelation (r) of binary mtDNA haplotype
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differences with distance. Error bars developed from bootstrapping and upper
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and lower limits of a 95% confidence interval about the null hypothesis are
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included.
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Supp. Figure 5. Correlogram of spatial autocorrelation (r) of binary mtDNA
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haplotype distance across 20 distance classes (in metres), with error bars
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developed from bootstrapping and upper and lower limits of a 95%
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confidence interval about the null hypothesis.
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Supplementary Table 1. Spatial autocorrelation analysis of microsatellite
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genotypes using increasing distance class sizes, with values of the spatial
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autocorrelation statistic (r), the upper and lower bounds of the null
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distribution, the probability (P) that r is greater than permuted r, and sample
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sizes.
Distance (m)
0 to 100
0 to 200
0 to 400
0 to 600
0 to 800
0 to 1000
0 to 1200
0 to 1400
0 to 2000
0 to 3000
0 to 4000
0 to 5000
0 to 5400
r
0.007
0.010
0.003
0.004
0.004
0.003
0.003
0.002
0.002
0.002
0.001
0.000
0.000
Upper
0.010
0.006
0.003
0.003
0.002
0.002
0.001
0.001
0.001
0.001
0.001
0.000
0.000
Lower
-0.010
-0.006
-0.003
-0.002
-0.002
-0.001
-0.001
-0.001
-0.001
-0.001
-0.001
0.000
0.000
P
0.092
0.003
0.030
0.002
0.001
0.001
0.002
0.005
0.003
0.004
0.014
0.614
0.926
N
584
1441
3921
6059
7785
9231
10179
10760
11465
11988
14380
16826
17020
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Supplementary Table 2. Spatial autocorrelation statistics (r) for microsatellite
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genotypes by distance class, upper (U) and lower (L) bounds of the null
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distribution, significance of a one-tailed test of positive autocorrelation (P),
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and sample sizes of pair-wise contrasts per distance class (N).
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Distance
(m)
140
223
295
358
435
516
595
694
793
901
1033
1228
1587
2995
3462
3769
4050
4285
4599
r
0.012
0.005
-0.004
-0.004
0.013
0.001
0.007
0.003
0.006
-0.004
-0.002
-0.002
-0.006
-0.005
0.000
-0.003
-0.005
-0.010
-0.004
U
0.009
0.009
0.008
0.009
0.009
0.008
0.008
0.008
0.009
0.009
0.009
0.008
0.008
0.007
0.008
0.008
0.009
0.008
0.008
L
-0.008
-0.008
-0.009
-0.008
-0.009
-0.008
-0.009
-0.008
-0.009
-0.008
-0.009
-0.009
-0.008
-0.008
-0.008
-0.008
-0.008
-0.008
-0.008
P
0.004
0.137
0.830
0.800
0.004
0.403
0.059
0.227
0.088
0.847
0.670
0.642
0.921
0.884
0.510
0.767
0.869
0.985
0.816
N
892
856
850
860
850
850
859
864
851
853
849
848
848
849
854
848
849
848
848
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Supplementary Table 3. Spatial autocorrelation statistic (r) of mtDNA binary
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haplotypes across increasing distance classes, with the upper (U) and lower
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(L) bounds of the null distribution, the probability (P) that r is greater than
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permuted r, and pairwise sample sizes (N).
Distance (m)
0 to 400
0 to 800
0 to 1200
0 to 1600
0 to 2000
0 to 2400
0 to 2800
0 to 3200
0 to 3600
0 to 4000
0 to 4400
0 to 4800
0 to 5200
r
0.155
0.100
0.116
0.108
0.096
0.091
0.091
0.085
0.064
0.051
0.032
0.010
0.002
U
0.089
0.057
0.043
0.039
0.037
0.034
0.041
0.031
0.029
0.021
0.018
0.011
0.003
L
-0.067
-0.036
-0.023
-0.018
-0.015
-0.014
-0.017
-0.016
-0.017
-0.014
-0.010
-0.009
-0.004
P
0.003
0.002
0.001
0.001
0.001
0.004
0.003
0.002
0.002
0.003
0.003
0.028
0.171
N
216
451
623
687
708
721
734
769
840
941
1052
1142
1213
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Supplementary Table 4. Spatial autocorrelation statistics (r) for binary mtDNA
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haplotype distances, upper and lower bounds of the null distribution, p-values
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for a one-tailed test of positive genetic autocorrelation versus null distribution,
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and sample sizes per distance class (N) for the correlogram.
Distance (m)
255
421
585
759
954
1215
2622
3517
3938
4275
4719
r
0.209
0.146
-0.136
0.175
0.109
0.159
0.008
-0.020
-0.089
-0.165
-0.160
U
0.127
0.131
0.119
0.121
0.132
0.125
0.111
0.118
0.134
0.130
0.121
L
-0.100
-0.118
-0.121
-0.126
-0.132
-0.130
-0.134
-0.134
-0.134
-0.138
-0.133
P
0.004
0.015
0.986
0.004
0.054
0.010
0.456
0.679
0.920
0.989
0.988
N
130
99
99
100
99
99
100
99
99
99
101
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