TPJ_3682_sm_supplementary appendix 1

advertisement
References for supplementary tables
Asano, Y. and Kato, Y. (1998) Z-phenylacetaldoxime degradation by a novel
aldoxime dehydratase from Bacillus sp. strain OxB-1. FEMS Microbiol. Lett., 158,
185-190.
Bailey, M.J., Lilley, A.K., Thompson, I.P., Rainey, P.B. and Ellis, R.J. (1995) Site
directed chromosomal marking of a fluorescent pseudomonad isolated from the
phytosphere of sugar beet; Stability and potential for marker gene transfer. Mol.
Ecol., 4, 755-763.
Barclay, M., Tett, V.A. and Knowles, C.J. (1998) Metabolism and enzymology of
cyanide/metallocyanide biodegradation by Fusarium solani under neutral and acidic
conditions. Enzyme Microb. Technol., 23, 321-330.
Bartel, B. and Fink, G.R. (1994) Differential regulation of an auxin-producing
nitrilase gene family in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA, 91, 66496653.
Bartling, D., Seedorf, M., Schmidt, R.C. and Weiler, E.W. (1994) Molecular
characterization of 2 cloned nitrilases from Arabidopsis thaliana - key enzymes in
biosynthesis of the plant hormone indole-3-acetic-acid. Proc. Natl. Acad. Sci. USA,
91, 6021-6025.
Buell, C.R., Joardar, V., Lindeberg, M., Selengut, J., Paulsen, I.T., Gwinn, M.L.,
Dodson, R.J., Deboy, R.T., Durkin, A.S., Kolonay, J.F., Madupu, R., Daugherty,
S., Brinkac, L., Beanan, M.J., Haft, D.H., Nelson, W.C., Davidsen, T., Zafar, N.,
Zhou, L.W., Liu, J., Yuan, Q.P., Khouri, H., Fedorova, N., Tran, B., Russell, D.,
Berry, K., Utterback, T., Van Aken, S.E., Feldblyum, T.V., D'Ascenzo, M., Deng,
W.L., Ramos, A.R., Alfano, J.R., Cartinhour, S., Chatterjee, A.K., Delaney, T.P.,
Lazarowitz, S.G., Martin, G.B., Schneider, D.J., Tang, X.Y., Bender, C.L., White,
O., Fraser, C.M. and Collmer, A. (2003) The complete genome sequence of the
Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000. Proc.
Natl. Acad. Sci. USA, 100, 10181-10186.
Compeau, G., Alachi, B.J., Platsouka, E. and Levy, S.B. (1988) Survival of
rifampin-resistant mutants of Pseudomonas fluorescens and Pseudomonas putida in
soil systems. Appl. Environ. Microbiol., 54, 2432-2438.
Dohmoto, M., Sano, J., Tsunoda, H. and Yamaguchi, K. (1999) Structural analysis
of the TNIT4 genes encoding nitrilase-like protein from tobacco. DNA Res., 6, 313317.
Feil, H., Feil, W.S., Chain, P., Larimer, F., DiBartolo, G., Copeland, A., Lykidis,
A., Trong, S., Nolan, M., Goltsman, E., Thiel, J., Malfatti, S., Loper, J.E., Lapidus,
A., Detter, J.C., Land, M., Richardson, P.M., Kyrpides, N.C., Ivanova, N. and
Lindow, S.E. (2005) Comparison of the complete genome sequences of
Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000. Proc. Natl.
Acad. Sci. USA, 102, 11064-11069.
Hoyle, A.J., Bunch, A.W. and Knowles, C.J. (1998) The nitrilases of Rhodococcus
rhodochrous NCIMB 11216. Enzyme Microb. Technol., 23, 475-482.
Ishikawa, T., Okazaki, K., Kuroda, H., Itoh, K., Mitsui, T. and Hori, H. (2007)
Molecular cloning of Brassica rapa nitrilases and their expression during clubroot
development. Mol. Plant Pathol., 8, 623-637.
Jandhyala, D., Berman, M., Meyers, P.R., Sewell, B.T., Willson, R.C. and
Benedik, M.J. (2003) CynD, the cyanide dihydratase from Bacillus pumilus: Gene
cloning and structural studies. Appl. Environ. Microbiol., 69, 4794-4805.
Karimi, M., Inze, D. and Depicker, A. (2002) GATEWAY((TM)) vectors for
Agrobacterium-mediated plant transformation. Trends Plant Sci., 7, 193-195.
Kato, Y., Nakamura, K., Sakiyama, H., Mayhew, S.G. and Asano, Y. (2000) Novel
heme-containing lyase, phenylacetaldoxime dehydratase from Bacillus sp, strain
OxB-1: Purification, characterization, and molecular cloning of the gene. Biochem.,
39, 800-809.
Ketelaar, T., Voss, C., Dimmock, S.A., Thumm, M. and Hussey, P.J. (2004)
Arabidopsis homologues of the autophagy protein Atg8 are a novel family of
microtubule binding proteins. FEBS Lett., 567, 302-306.
Kiziak, C., Conradt, D., Stolz, A., Mattes, R. and Klein, J. (2005) Nitrilase from
Pseudomonas fluorescens EBC191: cloning and heterologous expression of the
gene and biochemical characterization of the recombinant enzyme. Microbiol., 151,
3639-3648.
Kobayashi, M., Izui, H., Nagasawa, T. and Yamada, H. (1993) Nitrilase in
biosynthesis of the plant hormone indole-3-acetic-acid from indole-3-acetonitrile cloning of the Alcaligenes gene and site-directed mutagenesis of cysteine residues.
Proc. Natl. Acad. Sci. USA, 90, 247-251.
Kobayashi, M., Yanaka, N., Nagasawa, T. and Yamada, H. (1990) Purification and
characterization of A novel nitrilase of Rhodococcus rhodochrous K22 that acts on
aliphatic nitriles. J. Bacteriol., 172, 4807-4815.
Kovach, M.E., Elzer, P.H., Hill, D.S., Robertson, G.T., Farris, M.A., Roop, R.M.
and Peterson, K.M. (1995) Four new derivatives of the broad-host-range cloning
vector pBBR1MCS, carrying different antibiotic-resistance cassettes. Gene, 166,
175-176.
McBride, K.E., Kenny, J.W. and Stalker, D.M. (1986) Metabolism of the herbicide
Bromoxynil by Klebsiella pneumoniae subsp Ozaenae. Appl. Environ. Microbiol., 52,
325-330.
Park, W.J., Kriechbaumer, V., Muller, A., Piotrowski, M., Meeley, R.B., Gierl, A.
and Glawischnig, E. (2003) The nitrilase ZmNIT2 converts indole-3-acetonitrile to
indole-3-acetic acid. Plant Physiol., 133, 794-802.
Paulsen, I.T., Press, C.M., Ravel, J., Kobayashi, D.Y., Myers, G.S.A., Mavrodi,
D.V., DeBoy, R.T., Seshadri, R., Ren, Q.H., Madupu, R., Dodson, R.J., Durkin,
A.S., Brinkac, L.M., Daugherty, S.C., Sullivan, S.A., Rosovitz, M.J., Gwinn, M.L.,
Zhou, L.W., Schneider, D.J., Cartinhour, S.W., Nelson, W.C., Weidman, J.,
Watkins, K., Tran, K., Khouri, H., Pierson, E.A., Pierson, L.S., Thomashow, L.S.
and Loper, J.E. (2005) Complete genome sequence of the plant commensal
Pseudomonas fluorescens Pf-5. Nat. Biotechnol., 23, 873-878.
Piotrowski, M., Schonfelder, S. and Weiler, E.W. (2001) The Arabidopsis thaliana
isogene
NIT4
and
its
orthologs
in
tobacco
encode
beta-cyano-L-alanine
hydratase/nitrilase. J. Biol. Chem., 276, 2616-2621.
Rainey, P.B. (1999) Adaptation of Pseudomonas fluorescens to the plant
rhizosphere. Environ. Microbiol., 1, 243-257.
Rustler, S., Muller, A., Windeisen, V., Chmura, A., Fernandes, B.C.M., Kiziak, C.
and Stolz, A. (2007) Conversion of mandelonitrile and phenylglycinenitrile by
recombinant E.coli cells synthesizing a nitrilase from Pseudomonas fluorescens
EBC191. Enzyme Microb. Technol., 40, 598-606.
Stalker, D.M., Malyj, L.D. and McBride, K.E. (1988) Purification and properties of a
nitrilase specific for the herbicide Bromoxynil and corresponding nucleotidesequence analysis of the bxn gene. J. Biol. Chem., 263, 6310-6314.
Vodovar, N., Vallenet, D., Cruveiller, S., Rouy, Z., Barbe, V., Acosta, C.,
Cattolico, L., Jubin, C., Lajus, A., Segurens, B., Vacherie, B., Wincker, P.,
Weissenbach, J., Lemaitre, B., Medigue, C. and Boccard, F. (2006) Complete
genome sequence of the entomopathogenic and metabolically versatile soil
bacterium Pseudomonas entomophila. Nat. Biotechnol., 24, 673-679.
Wood, D.W., Setubal, J.C., Kaul, R., Monks, D.E., Kitajima, J.P., Okura, V.K.,
Zhou, Y., Chen, L., Wood, G.E., Almeida, N.F., Woo, L., Chen, Y.C., Paulsen, I.T.,
Eisen, J.A., Karp, P.D., Bovee, D., Chapman, P., Clendenning, J., Deatherage,
G., Gillet, W., Grant, C., Kutyavin, T., Levy, R., Li, M.J., McClelland, E., Palmieri,
A., Raymond, C., Rouse, G., Saenphimmachak, C., Wu, Z.N., Romero, P.,
Gordon, D., Zhang, S.P., Yoo, H.Y., Tao, Y.M., Biddle, P., Jung, M., Krespan, W.,
Perry, M., Gordon-Kamm, B., Liao, L., Kim, S., Hendrick, C., Zhao, Z.Y., Dolan,
M., Chumley, F., Tingey, S.V., Tomb, J.F., Gordon, M.P., Olson, M.V. and Nester,
E.W. (2001) The genome of the natural genetic engineer Agrobacterium tumefaciens
C58. Science, 294, 2317-2323.
Download