Alzheimer`s Disease Phenotype

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Dementia and Alzheimer’s Disease Phenotype

Pseudocode

April 7, 2008

Alzheimer’s Disease Research Quality Phenotype Does anyone in the group other than Group

Health have this quality information? The first target phenotype that we will analyze in the

ADPR/ACT population is probable or possible AD based on NINCDS-ADRDA criteria.

A 2-stage screening process is used to identify cases; CASI scores ≤85 prompt a dementia evaluation (in HAAS the CASI cut point is 74). Informant, subject, or staff reports of cognitive difficulties also trigger evaluation. The 2nd stage diagnostic examination has two parts: neuropsychological testing and a neurological exam by a physician. Medical records are abstracted for standardized labs (CBC, chemistry panel, B12, TSH) and neuroimaging. If any of these are unavailable in the prior year they are obtained. These data are used to complete standard DSM-IV diagnostic criteria for dementia and subtypes, NINCDS-ADRDA criteria for

AD, and 3 sets of criteria for vascular dementia. The dementia neuropsychological battery includes clock drawing, verbal fluency, Mattis Dementia Rating Scale, Boston naming, verbal paired associations and recall, logical memory and recall, Word List Memory, Constructional

Praxis and recall, Trails A and B, and Information and Comprehension subtest items. All clinical data are reviewed at a consensus conference. These procedures have been used continuously over

22 years since the inception of the ADPR in 1986. ACT dementia and AD diagnoses have been used in many papers, including an incidence rate paper, and high-impact papers on exercise, cholesterol, statins, and vitamins.

Of note, in the first 221 ACT subjects who died and came to post-mortem examination, clinical diagnoses during life of probable AD and possible AD were equally likely to be found to have high-grade plaques and tangles: for probable AD, 18/33 (55%) had both Braak stage >=4

AND CERAD score >=2, while for possible AD these numbers were 10/19 (53%). The distribution of Braak stages was similar for the two groups.

Case = Probable/possible Alzheimer’s disease adjudicated by a consensus panel

Each case reviewed by a consensus panel that includes:

The examining MD

A second MD who is either a neurologist or geriatrician

A neuropsychologist

A psychometrician

The study RN

Criteria Used by panel:

1.

Meets DSM IV – Dementia criteria

2.

NINCDS-ADRDA criteria for probable and possible Alzheimer’s.

3.

Study also has an autopsy “bank” (relevant for diagnosis of definite Alzheimer’s) and approximately 1,200 consents for autopsy from currently living participants.

Dementia Clinical Quality Phenotype

Identify Dementialusing an ICD-9 DX codes ora drug from the following list: Tacrine (Cognex), donepezil (Aricept, Eisai Inc. and Pfizer Inc.), galantamine (Razadyne, also called Reminyl prior

to April 2005, Ortho-McNeil Neurologics, US), rivastigmine (Exelon, ExelonPatch, Novartis

Pharmaceuticals Corporation), memantine (Namenda)."

The VDW program we propose is: title "Identify people with Demential including Alzheimber's Disease using clinical DX and Drugs";

%let StartDt = 01jan2000 ;

%let EndDt = 31dec2007 ;

* Get those with Alzheimer's DX code;

************************************; data DxCodes ;

input Dx $char6. ; cards;

290.0

290.10

290.11

Senile dementia, uncomplicated

290-10-290.13 Presenile dementia

290.12

290.13

290.20

290.21

290.3 senile dementia delusionial [paranoid] features senile dementia with depressive features

290.40

290.41

290.42 senile dementia with delirium or confusion

290.40-290.43 arteriosclerotic dementia

Vascular dementia with delirium

Vascular dementia with delusions

290.43

291.0

291.1

291.0-291.2 dementia due to alcohol

291.2

292.82

294.10 arteriosclerotic dementia due to drugs

294.10-294.11 dementia not classified as senile, presenile, or

294.11

331.0

331.11

331.19

331.82

Alzheimer's disease

Pick's disease of the brain

Other frontotemporal dementia

Dementia with Lewy bodies. Dementia with Parkinsonism run;

* comment for 5 digit codes do we need to expand to 6? i.e. 291.0x? ;

%GetDxForDx(

DxCodes /* The name of a dataset containing the diagnosis

list you want. */

, Dx /* The name of the DX variable in DxLst */

, &StartDt /* The date on which you want to start collecting fills. */

, &EndDt /* The date on which you want to stop collecting fills. */

, AlzDxPeople /* The name of the output dataset containing the fills. */

) ; run;

* Get Alzheimer's drugs from RX;

**************************; data NdcCodes;

input ndc $char11. ; cards;

000071009625 NDC for "Tacrine 10 MG Oral Capsule":

000071009640

00071009625

00071009640

00143910812

059630019012

59630019012

000071009725

000071009740

00071009725

00071009740

00143910912

059630019112

59630019112

000071009525

000071009540

00071009525

00071009540

00143911012

059630019212

59630019212

000071009825

000071009840

00071009825

00071009840

00143911112

059630019312

59630019312

000143-9108-12

00071009625

00071009625

00071009640

00071009640

00143910812

059630-*190-12

59630-190-12

NDC for "Tacrine 20 MG Oral Capsule":

NDC for "Tacrine 30 MG Oral Capsule":

NDC for "Tacrine 40 MG Oral Capsule":

NDC for "Cognex 10 MG Oral Capsule":

59630019012

59630019012

62856085130

062856083230

49999075430

62856083230

00247181930

00247181960

00615552305

00615552331

00615552339

011071-*832-01

011071-*842-01

062856024630

062856024641

11071083201

11071084201

12280036715

12280036730

12280036790

26053012201

51129412601

51129412602

54868424500

55289015121

55289015130

58864089530

62856024611

62856024617

62856024630

62856024641

62856024690

66105073701

66105073703

66105073706

66105073709

66105073715

67544009215

67544009231

67544009288

67544009289

011071-*831-01

062856083130

11071083101

49999075330

62856083130

NDC for "donepezil 1 MG/ML Oral Solution":

NDC for "donepezil 10 MG Disintegrating Tablet":

NDC for "donepezil 10 MG Oral Tablet":

NDC for "donepezil 5 MG Disintegrating Tablet":

00247181830

00615552905

00615552931

00615552939

011071-*841-01

062856024530

062856024541

11071084101

12280029215

12280029230

12280029290

26053012101

54868395200

55154245000

58864088630

62584017750

62856024507

62856024511

62856024530

62856024541

62856024547

62856024567

62856024590

66105073901

66105073903

66105073906

66105073909

66105073915

67544059231

00615652631

00615652639

050458039260

050458039860

21695059130

50458039260

50458039860

59604039260

59604039860

62579039260

050458038830

50458038804

50458038830

59604038804

59604038830

050458038930

50458038930

NDC for "donepezil 5 MG Oral Tablet":

NDC for "Galantamine 12 MG Oral Tablet":

NDC for "Galantamine 16 MG Extended Release Capsule":

NDC for "Galantamine 24 MG Extended Release Capsule":

59604038930

000179-1721-70

000179-1721-71

000179-1721-72

00179172170

00179172171

00179172172

00615652531

00615652539

050458039060

050458039660

12280029160

21695018430

26053015501

50458039004

50458039060

50458039660

51129332501

51129332502

59604039060

59604039660

61392055925

61392055930

61392055960

62579039040

62579039060

050458039910

12578039910

12578049010

50458039910

50458049010

050458038730

50458038704

50458038730

59604038704

59604038730

00615651731

00615651739

050458039160

050458039760

26053015601

50458039104

50458039160

50458039760

51129332901

51129332902

NDC for "Galantamine 4 MG Oral Tablet":

NDC for "Galantamine 4 MG/ML Oral Solution":

NDC for "Galantamine 8 MG Extended Release Capsule":

NDC for "Galantamine 8 MG Oral Tablet":

59604039104

59604039160

59604039765

62579039160

000078050115

Patch":

00078050115

00078050161

17088010401

59568050101

000078050215

Patch":

00078050215

00078050261

0078-0502-15

17088010501

59568050201

000078032306

000078032308

000078032344

00078032306

00078032308

00078032315

00078032326

00078032344

055111-*352-01

055111-*352-05

055111-*352-30

055111-*352-60

12280038960

17088001801

26053029901

54868451200

54868451201

55111035201

55111035205

55111035230

55111035260

66544000401

66828001201

000078033931

00078033931

000078032406

000078032408

000078032444

00078032406

NDC for "24 HR rivastigmine 0.192 MG/HR Transdermal

NDC for "24 HR rivastigmine 0.396 MG/HR Transdermal

NDC for "rivastigmine 1.5 MG Oral Capsule":

NDC for "rivastigmine 2 MG/ML Oral Solution":

NDC for "rivastigmine 3 MG Oral Capsule":

00078032408

00078032415

00078032444

00615136531

00615136539

055111-*353-01

055111-*353-05

055111-*353-30

055111-*353-60

17088001901

17856032402

26053030001

55111035301

55111035305

55111035330

55111035360

66544000201

66828001301

000078032506

000078032508

000078032544

00078032506

00078032508

00078032515

00078032544

00615136931

00615136939

055111-*354-01

055111-*354-05

055111-*354-30

055111-*354-60

17088002001

54868524000

55111035401

55111035405

55111035430

55111035460

66828001401

000078032506

000078032508

000078032544

00078032506

00078032508

00078032515

00078032544

00615136931

NDC for "rivastigmine 4.5 MG Oral Capsule":

NDC for "rivastigmine 4.5 MG Oral Capsule":

00615136939

055111-*354-01

055111-*354-05

055111-*354-30

055111-*354-60

17088002001

54868524000

55111035401

55111035405

55111035430

55111035460

66828001401

000078032506

000078032508

000078032544

00078032506

00078032508

00078032515

00078032544

00615136931

00615136939

055111-*354-01

055111-*354-05

055111-*354-30

055111-*354-60

17088002001

54868524000

55111035401

55111035405

55111035430

55111035460

66828001401

000456321021

000456321022

000456321060

000456321063

00247212130

00247212160

00456321010

00456321011

00456321021

00456321022

00456321060

00456321063

00615650805

00615650831

NDC for "rivastigmine 4.5 MG Oral Capsule":

NDC for "Memantine 10 MG Oral Tablet":

00615650839

12280028430

12280028460

21695016930

21695016960

26053021501

49999080430

49999080460

51129284901

51129284902

55154461508

55154461800

55289093730

55289093760

58864088730

63711041010

67544050531

67544050532

63711041510

000456320212

00456320212

63711042010

000456320521

000456320522

000456320560

000456320563

00456320511

00456320521

00456320522

00456320560

00456320563

00615651931

00615651939

12280038160

21695023260

26053021601

54868565400

55154461700

63629338301

63629338302

63629338303

63629338304

63711040510

67544062631 run;

NDC for "Memantine 15 MG Oral Tablet":

NDC for "Memantine 2 MG/ML Oral Solution":

NDC for "Memantine 20 MG Oral Tablet":

NDC for "Memantine 5 MG Oral Tablet":

%GetRxForDrugs(

NdcCodest

, &StartDt

, &EndDt

/* The name of a dataset containing the NDCs of the drugs whose fills you want. */

/* The date on which you want to start collecting fills.*/

/* The date on which you want to stop collecting fills. */

, AlzRxPeople /* The name of the output dataset containing the fills. */

) ;

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