Supplemental information Activin C expressed in nociceptive afferent neurons is required for suppressing inflammatory pain Xing-Jun Liu, Fang-Xiong Zhang, Hui Liu, Kai-Cheng Li, Ying-Jin Lu, Qing-Feng Wu, Jia-Yin Li, Bin Wang, Qiong Wang, Li-Bo Lin, Yan-Qing Zhong, Hua-Sheng Xiao, Lan Bao and Xu Zhang 一 Supplemental methods Microarray and real-time RT-PCR Total RNA was isolated from the rat DRGs using the Agilent total RNA isolation mini kit (Agilent Technologies Inc., Santa Clara, CA, USA) and used as templates for cDNA synthesis. In vitro transcription was carried out using Agilent low RNA input fluorescent linear amplification kit in the presence of Cy3- and Cy5-CTP. Synthesized fluorescence-labeled cRNA was used for microarray hybridization. Hybridization solution was prepared according to the in situ hybridization kit plus (Agilent Technologies Inc.). Hybridization was carried out using custom microarray at 60℃ for 18 h in a dye-swap replication experimental design. Microarray scanner system (Agilent Technologies Inc.) was used for data analysis. After feature extraction by Feature Extraction software, log2 ratio values, which equal to the ratio of Cy5-processed signal to Cy3-processed signal, were calculated and converted to fold change. Genes with a log2 ratio > 1 (> 2-fold increase) were considered to be up-regulated and < -1 (> 2-fold decrease) were considered to be down-regulated. Following filtration and normalization of each qualified gene, hierarchical clustering and visualization were carried out using Cluster 3.0 and TreeView software (Eisen Lab, Stanford, CA, USA). Two oligonucleotides: 5’-CCACCCAGACCATGAATATAAGAGTTCTTGTGCTAAGGCCATATGACA and CCAACCT-3’ 5’-TACCAAGACTCATCACCTGAACTCTCCTACCCAACTGAACTTGACCAAA GGGAGA-3’, were used as the probes of rat Inhbc gene (GenBank: NM_022614). For real-time RT-PCR 5’-TTTTGTGGCAGCCCAGGTAA-3’ analysis, two (forward) primers and 5’-AGCCAATCTCACGGAAGTCCA-3’ (reverse) for Inhbc gene (NM_022614) and two primers 5’-ATCACCATCTTCCAGGAGCGA-3’ (forward) and 5’-AGCCTTCTCCATGGTGGTGAA-3’ (reverse) for inner control GAPDH were designed. The SYBR PrimeScript RT-PCR Kit (Takara, Dalian, China) was used according to its standard procedure. Normalization was done with GAPDH mRNA in the same reaction. Rat Inhbc gene clone The cDNA of activin βC was cloned from mRNA of rat DRGs by RT-PCR methods with a set of primer: forward primer 5’-ccatcgatcgatggcctcctccttgctcctgg-3’ and reverse primer 5’-cccccgggggctaactgcacccacaggcctct-3’. The PCR products were double-digested with Cla I and Xma I restriction enzymes. The digested products were ligated into the vector double-digested with Cla I and Xma I enzymes from pCAG-IRES-EGFP. The recombinant plasmid was sequenced and the sequence was used to BLAST search in GenBank to confirm the nucleotide constitution. In situ hybridization The method for in situ hybridization was modified from the previously published procedure (Wang et al., 2010). Briefly, lumbar (L) 4 and L5 DRGs were dissected out from the anesthetized rats. Frozen DRGs were sectioned in a cryostat at a thickness of 14-μm and mounted on Probe-On Plus slides (Fisher Scientific, Hudson, NH, USA). The oligonucleotide: 5’-TCTCCCTTTGGTCAAGTTCAGTTGGGTAGGAGAGTTCAGGTGATGAGTC TTGGTA-3’ was designed as the probe for rat Inhbc gene (NM_022614), and was labeled at 3’-end with digoxigenin using DIG Oligonucleotide Tailing Kit (Boehringer-Mannheim, Leves, UK). DRG sections were hybridized with the probe (6~10 nM) for 18 h at 42℃. After washing, sections were blocked with 0.5% bovine serum albumin (Sigma) for 1 h followed by incubation with alkaline phosphatase-conjugated anti-digoxigen antibody (1:5,000; Roche Diagnostics GmbH; Roche Diagnostics, Germany) overnight at 4℃. Sections were then incubated with a mixture of nitro-blue tetrazolium and 5-bromo-4-chloro-3-indolyl-phosphate in alkaline phosphatase buffer for 6~24 h for color development. To determine the percentage of labeled neurons, a total of five sections selected every four sections of L4 or L5 DRGs from at least three animals at each time point were processed. Neurons with three times more densities than mean background densities were counted. Mean background densities were determined by averaging densities over defined areas of the neuropil devoid of positively labeled cell bodies, and by comparing with the averaged densities of neurons in the sections processed with sense probes or pre-absorbed antibodies for control. Percentage of labeled neuron profiles in the total number of neuron profiles was analyzed. To determine the size distribution of neurons, the neuron profiles with a clear nucleus were selected and measured on three lightly stained sections. The size distribution was shown with the data pooled from at least five rats, and the number of neurons in serial of per 100 μm2 was count. Image-Pro Plus 5.0 software (Media Cybernetics, Silver Spring, MD, USA) was used to measure the area of the cell profiles expressed as μm2. Immunohistochemistry Rats were anesthetized and perfused through the ascending aorta with saline followed by 4% paraformaldehyde and 0.02% picric acid. L4 and L5 DRGs were removed and post-fixed in the same fixative for 1.5 h. The DRG sections were cut in a cryostat (14 μm). After antigen being retrieved with the Frozen Section Chemical Antigen Retrieval Reagent (GenMed Scientifics, Wilmington, DE, USA), sections were perforated with 0.5% Triton X-100 (Sigma) in phosphate buffered saline (PBS) for 1 h and then blocked in PBS containing 10% donkey serum, 0.1% gelatin and 0.05% Triton X-100 for 2 h. Sections were incubated over night at 4 ℃ with rabbit antibodies against activin C (1:1,000; BlueGene, Shanghai, China) or goat antibodies against βC subuint (1:100; Santa Cruz Biotechnology, Santa Cruz, CA, USA), combined with goat or rabbit antibodies against CGRP (1:2,000; AbD Serotec, Kidlington, Oxford, UK; 1:1,000; DiaSorin, Wokingham, UK) or fluorescein-conjugated isoletin-I B4 (IB4; 1:1,000; Vector Labs, Burlingame, CA, USA). Sections were then incubated for 30 min at 37 ℃ with FITC- and Cy3-conjugated secondary antibodies. The fixed L4 and L5 spinal cord segments of rats were also embedded in paraffin. After deparaffinization and rehydration, the paraffin sections were incubated with 0.2% hydrogen peroxide in 0.1 phosphate buffer pH 7.3 containing 0.2% Triton X-100 for 10 min at room temperature. After being washed 3 times in 0.02 M PBS for 5 min, the sections were boiled in citrate buffer (pH 6.0) for 30 min for antigen retrieval. Sections were blocked by incubation with goat antiserum in TBST for 2 h at room temperature and then incubated with goat primary antibody against activin C (1:50, Sant Cruz) or the activin C antibodies pre-absorbed with corresponding immunogenic peptides for 48 h at 4°C. After being washed 3 times in 0.02 M PBS for 5 min, the sections were incubated with biotinylated secondary antibodies in PBS for 1 h at room temperature and overnight at 4°C. After being washed 3 times in 0.02 M PBS for 5 min, sections were incubated with a solution of diaminobenzidine and nickel ammonium sulfate at room temperature, and then the staining was developed. For quantitative analysis, a total of five sections from each DRG at each time point were selected in every four sections. Five animals were analyzed in each group. To determine the percentage of labeled neuron profiles, the number of immunostained neuron profiles was divided by the total number of neuron profiles. The percentage of labeled neurons in each subset of small DRG neurons was also counted. Immunoprecipitation The DRGs were lysed in ice-cold buffer (50 mM Tris, 150 mM NaCl, 0.1% Triton-100, 10% glycerol, 0.5 mg/ml BSA and protease inhibitors). The suspended lysate was immunoprecipitated with 0.5 µg goat anti-activin A antibody for 1 h at 4°C and then with Protein G-Agarose for goat antibody overnight at 4°C. Immunoprecipitates were collected and aspirated. The sepharose was resuspended in RIPA buffer without SDS, washed at least 3 times, and incubated in SDS buffer for 20 min at 60°C. Then, immunoblotting was processed. Cell culture and treatment ND7-23 cells (ECACC, Salisbury, Wiltshire, UK) were cultured in DMEM medium (Invitrogen, Grand Island, CA, USA) with 10% fetal bovine serum (Invitrogen), 100 U/ml penicillin /100 pg/ml streptomycin mixture (Invitrogen), and 2 mM L-glutamine (Invitrogen) at 37℃. After being starved for at least 4 h, cells were pretreated with 20 ng/ml recombinant human-activin C (BlueGene) or vehicle (0.2% bovine serum albumin in PBS) for 20 min, followed by 10-min incubation with 100 ng/ml nerve growth factor (NGF; Sigma), 5.0 μM prostaglandin E2 (PGE2; Sigma), 10 μM glutamate (Sigma), 50 mM K+, and 100 ng/ml tumor necrosis factor-α (TNF-α; Sigma), respectively. The DRGs collected from male rats (~180 g) were kept in L-15 medium (Invitrogen) and digested with digestive mixture including 0.1 mg/ml DNase (Sigma), 1 mg/ml trypsin (Sigma) and 0.4 mg/ml collagenase (Sigma) for 30~45 min at 37℃. Cells were mechanically dissociated with a flame-polished Pasteur pipette in L-15 medium. DRG cells were pelleted and re-suspended in the medium [DMEM : F-12 Nutrient Mixture (Invitrogen) = 1:1], supplemented with 10% fetal bovine serum and 100 U/ml penicillin/100 pg/ml streptomycin mixture at 37℃. After culture for 6 h, the complete medium was replaced by the same medium without serum but N2 supplement (1:100; Invitrogen) was added. DRG neurons were cultured for 24 h before use. After being starved for 48 h, cells were pretreated with 20 ng/ml activin C or vehicle for 30 min, followed by 5-min treatment with 100 ng/ml NGF. Intrathecal injection The single intrathecal injection was performed through a puncture at the theca of rat spinal cord into the subarachnoid space. The site for the subarachnoid puncture was determined by a palpation at the iliac bone tuberosities, the spinous process of the last lumbar (L) vertebra, and below lumbosacral space. The L5-L6 intervertebral spaces were identified by sliding the index finger along the midline in the rostral direction. A sterile needle (30-gauge, 0.5-inch in length) was approaching the midline of the intervertebral space, with the bevel of the needle facing rostrally. When the needle tip reached the intervertebral space for 2-3 mm in depth, the correct subarachnoid positioning of the needle tip was verified by a brisk tail-flicking. Then, the reagent (20 μl) was injected into the subarachnoid space at the cauda equina region. The needle was left in the place for 5 seconds before being withdrawn. Animals then recovered in their home cages. A series of experiments was carried out to confirm the injection site. We found that the methylene blue (in 20 µl saline) was distributed in the subarachnoid space from the cauda equina to the lumbosacral enlargement 30 to 60 minutes after intrathecal injection. Intrathecal injection was determined by the distribution of methylene blue in the lumbosacral enlargement and cerebrospinal fluid (CSF), but not in the epidural space and paravertebral tissues. During the dissection, the injection site through the dura could be visualized but there was no obvious damage to underlying structures. For multiple intrathecal administration of reagents, a polyethylene-10 tube was catheterized into the subarachnoid space of rats under sevoflurane anesthesia and aseptic surgical conditions. The skin of operation region was prepared and draped. The polyethylene tube (17-cm long) was sterilized by immersion in 70% ethanol, and fully flushed with sterile water prior to the insertion. The vertebral arches of L6 and sacral (S) 1 were exposed through a 2-cm vertical incision. A 27-gauge needle was inserted through the L6-S1 intervertebral space to puncture the dura, and was then withdrawn. After seeing a little CSF flow out, the catheter (3 cm in length) was carefully introduced through the hole into the subarachnoid space at the rostral level of the lumbosacral enlargement. Slight negative pressure was applied to the syringe until CSF was obtained and 15~20 μl of saline was infused into the catheter. To seal the catheter, a bead was made on the external end of the catheter by passing the flame of a lighter. Then, the tube was subcutaneously imbedded. The rats carrying the catheters were individually housed. All tests were performed 5 days after intrathecal catheterization. When the experiments were finished, lidocaine (10 μl × 20 μg/μl) was injected through the intrathecal catheter to induce the paralysis of hind limbs of all experimental animals and, thus, to confirm that the injection site was appropriate. The data obtained from animals which did not show paralysis of hind limbs were excluded from the quantitative analysis. Small interfering RNA and delivery Four pairs of siRNA targeting activin βC and one pair non-targeting control siRNA were designed and synthesized by GenePharma (Shanghai, China). After the screening of pilot study from in vitro and in vivo, we found that a pair siRNA could strongly reduce activin C expression. According to the siRNA sequence, a pair of scramble siRNA control was designed and synthesized. The siRNA targeting activin βC: sense: 5’-GGGACAGCAACAUUGUCAATT-3’, antisense: 5’-UUGACAAUGUUGCUGUCCCTT-3’. The non-targeting control siRNA: sense: 5’-UUCUCCGAACGUGUCACGUTT-3’, antisense: 5’-ACGUGACACGUUCGGAGAATT-3’. The scramble control siRNA: sense: 5’-GGACAAGCACGAAUGUUCATT-3’, antisense: 5’-UGAACAUUCGUGCUUGUCCTT-3’. siRNAs were reconstituted with sterile RNase free water and mixed with the transfection reagent polyethyleneimine (ExGen 500; Fermentas, Hanover, MD, USA), 10 min before injection to increase cell membrane penetration and reduce the degradation (Xu et al., 2010). Polyethyleneimine was dissolved in 5% glucose buffer, and 1 μg of siRNA was mixed with 0.18 μl of polyethyleneimine. In the screening of pilot study, 4.0 μg siRNA or non-targeting control siRNA was intrathecally delivered 72 h before DRGs were dissected for immunoblotting. In the formalin test, 4.0 μg siRNA or scramble control siRNA was intrathecally administrated 72 h before formalin injection. In the CFA model, 4.0 μg siRNA or scramble control siRNA was intrathecally injected, whereas 50 μl CFA was injected intraplantarly. Lipofectamine 2000 transfection reagent (Invotrogen) was employed to delivery the activin βC siRNA into ND 7-23 cells. Behavioral tests We performed the following tests double-blindly. The animal model was prepared by injection of 100 μl CFA into the left hindpaw. The rats were habituated in boxes on an elevated metal mesh floor for at least 30 min before tests. The paw withdrawal latency to a noxious thermal stimulus (radiant heat test) was determined as the average of three measurements per paw over a 5-min test period, and a cutoff time of 30 sec was set to avoid tissue damage. The tactile withdrawal thresholds were determined when there were three positive responses out of five stimuli with von Frey filaments presented perpendicular to the plantar surface. Activin C dissolved in 0.2% bovine serum albumin in PBS was intrathecally injected through a spinal catheter. For control, the vehicle was injected in the same way. For the formalin test, 50 μl of 5% (for activin C), 2% (for siRNA) or 1% (for antibody) formalin in saline was injected into the plantar surface of left hindpaw. The number of flinches were counted within the first phase (1~10 min) and the second phase (10~60 min). Under brief diethyl ether anesthesia, the rats were intrathecally pretreated with 200 ng activin C (in 20 μl) or vehicle for 15 min, or 4.0 μg siRNA or 4.0 μg scramble control siRNA (in 20 μl; GenePharma) for 72 h, or 2 μg antibodies against activin C (in 20 μl; Santa Cruz Biotechnology), or activin C antibodies denatured in boiling water bath for 30 min, or 2 μg normal goat IgG (in 20 μl; Santa Cruz Biotechnology) for 30 min. Figure legends Supplemental Figure 1. (A) Immunoblotting with activin βC antibodies showed the monomer of activin βC in HEK293 cells transfected with the plasmid expressing activin βC. (B) Immunoblotting in a reduced condition showed the precursor (~60 kD) and monomer (~12.5 kD) of activin βC in the lysate of L4 and L5 DRGs. The immunoblot intensities of activin βC precursor and monomer in L4 and L5 DRGs were decreased after peripheral inflammation. (C) In ND 7-23 cells treated with activin βC siRNA, the level of activin βC was decreased (nor, normal). The immunoblot intensities of activin βC were normalized to GAPDH (n = 7). ** P < 0.01 and *** P < 0.001, compared with control (Con). Data was shown as mean ± s.e.m.. Supplemental Figure 2. (A, B) Intrathecal treatment with activin C antibodies denatured in boiling water bath could not alter the flinch behavior of rats induced by 1% formalin. (C, D) Intraplantarly injected activin C (100 ng in C and 1.0 μg in D) did not affect the basal response to heat stimuli of rats. (E, F) Intraplantarly injected activin C (100 ng in E and 1.0 μg in F) did not change the threshold of thermal nociceptive response on post-CFA day 2. Data was shown as mean ± s.e.m.. Supplemental Figure 3. (A) Co-immunoprecipitation experiment showed that activin A interacts with follistatin, but not with activin C, in the extract of rat DRGs. (B) immunoblot analysis showed that activin A, but not activin C, induced Smad2 phosphorylation in cultured ND 7-23 cells. Moreover, activin C could not alter the Smad2 phosphorylation induced by activin A. The data represent three independent experiments with the similar results.