Molecular Markers of Phenotypes and Endotypes Ioana Agache A phenotype covers the visible properties of a disease. Although clinically relevant it does not reflect the underlying pathophyiologic mechanisms, which are addressed by the endotypes. Accurate endotyping of asthma starts with the identification of corresponding molecular biomarkers for each pathogenic mechanism operating within an asthma phenotype or subphenotype. Various biomarkers are described for eosinophilic inflammation, Th2 profile/allergic inflammation, intrinsic/non-atopic asthma, neutrophilic inflammation, neurogenic inflammation, immune regulation in asthma, innate immunity, resolution of inflammation, airway remodelling, airway hyperreactivity, susceptibility to asthma exacerbations, age-related differences in asthma, sex-related differences in asthma, severe asthma, decreased response to corticosteroids or beta2 agonists. The relevance of each biomarker should be supported by the validity and plausibility of the mechanism involved and should be tested in experimental models and consequent intervention trials. A good example of valid biomarkers would be their capability to predict response to targeted treatment in asthma (sputum eosinophils and anti IL-5, periostin and anti IL-13). Furthermore the biomarkers related to an endotype should prove stable over time or with a predictable variation pattern and should be replicated across populations with different genetic background.