1 2 3 A point mutation of zebrafish c-cbl gene ring finger domain induced a phenotype mimic human myeloproliferative disease 4 5 Running title: Zebrafish c-cbl mutant induces HSPC proliferation 6 7 Xiaolan Peng1,*, Mei Dong2,*, Lie Ma5,1*, Xiao-E Jia2, Jianhua 8 Mao1, Changbin Jin2, Yi Chen1, Lei Gao2, Xiaohui Liu1, Ke Ma2, 9 Lei Wang2, Tingting Du1, Yi Jin1, Qiuhua Huang1, Keqin Li1, 10 Leonard I. Zon3,4, Tingxi Liu1,2, Min Deng2, #, Yong Zhou2, #, 11 Xiaodong Xi1, Yi Zhou3, #, Saijuan Chen1,# 12 13 1. State Key Laboratory for Medical Genomics, Shanghai 14 Institute of Hematology, RuiJin Hospital, Shanghai Jiao Tong 15 University (SJTU) School of Medicine, and Collaborative 16 Innovation Center of Systems Biomedicine, SJTU, Shanghai, 17 200025, China 18 2. Key Laboratory of Stem Cell Biology, Institute of Health 19 Sciences, Shanghai Institutes for Biological Sciences and 20 Graduate University, Chinese Academy of Sciences & Shanghai 21 Jiao Tong University School of Medicine, Shanghai, 200025, 22 China 1 23 3. Stem Cell Program at Boston Children’s Hospital, 24 Hematology/Oncology Program at Children's Hospital and Dana 25 Faber Cancer Institute, Harvard Medical School, Boston, 26 MA02115, USA 27 4. Howard Hughes Medical Institute 28 5. Shanghai Center for Systems Biomedicine, Ministry of 29 Education Key Laboratory of Systems Biomedicine, Shanghai 30 Jiao Tong University, Shanghai, 200240, China 31 32 * These authors contribute equally to this work. 33 # Address correspondence to: 34 Saijuan Chen, E-mail: sjchen@stn.sh.cn 35 Yi Zhou, E-mail: yzhou@enders.tch.harvard.edu 36 Yong Zhou, E-mail: zhouyong@sibs.ac.cn 37 Min Deng, E-mail: mdeng@sibs.ac.cn 38 2 39 40 The supplementary information includes seven figures, two movies and 41 one table: Supplementary Figures 1–3 and 5-6 further displayed the 42 phenotype of homozygous LDD731 mutants. Supplementary Figures 4 43 and 7 further confirmed c-cbl mutation. Supplementary table lists the 44 oligos used in the article. 45 3 46 47 Supplementary Figure legends 48 Supplementary Figure 1. 49 Increase of HSPCs began from 3 dpf. WISH analysis of 50 hematopoietic lineages of LDD731 mutants and their siblings at 51 3 dpf. (A–D) WISH analysis of the level and pattern of c-myb 52 expression at 36 hpf and 3 dpf. (E–H) WISH analysis of the 53 levels and patterns of αe1 and mpo at 3 dpf. 54 55 Supplementary Figure 2. 56 Primitive hematopoiesis was not affected in homozygous 57 LDD731 mutants. (A and B) Angiogenesis and vasculogenesis 58 were normal as revealed by flk1, a marker of vascular 59 endothelial cells. (C–L) Expression of scl (marker for HSPCs), 60 gata1 (marker for erythroid progenitors), pu.1 (marker for 61 myeloid progenitors) and mpo (marker for mature myeloid cells) 62 was normal in LDD731 mutants at 22 hpf, a period at the stage 63 of primitive hematopoiesis. Abbreviation: anterior lateral plate 64 mesoderm (ALPM), inner cell mass (ICM), dorsal aorta (DA), 65 posterior cardinal vein (PCV). 66 67 Supplementary Figure 3. 4 68 Expression of c-myb obviously increased at the KM but not 69 at 70 stem/progenitor cells was specific for hematopoietic system 71 in homozygous LDD731 mutants. (A and B) Dorsal view of 72 c-myb expression at the KM and thymus. (C–E) WISH with 73 zgc55605, a marker of pronephric ducts. (D–F) WISH 74 experiment with rag-1, a marker of T cells. (G and H) Lateral 75 view of the trunk showing an increased expression of c-myb 76 (asterisk) in LDD731 mutants. (I and J) WISH analysis of the 77 HSPC marker scl at 5 dpf. (K–N) WISH analysis of stem cell 78 markers of other tissues/organs, such as vasa (marker for germ 79 line stem cells) and nr4a2b (marker for neural stem cells). the thymus, and the enhanced proliferation of 80 81 Supplementary Figure 4. 82 Confirmation of c-cbl mutation. (A–D) Sequencing of the 83 mutation site of the c-cbl gene in genomic DNA from the 84 grandfather, grandmother, father and mother of the LDD731 85 mutants. Note that the father and mother were heterozygotes for 86 the mutation. The results together with those of the offsprings 87 (see Figure 2 in the text) agree with Mendel’s law of autosomal 88 recessive inheritance. (E–I) Sequencing of the mutation site of 89 the c-cbl gene in genomic DNA samples from five WT zebrafish 5 90 strains. Genomic DNA samples from five strains of WT 91 zebrafish of Tu, AB, WIK, Longfin and SH were sequenced 92 excluding the genetic polymorphism. (J) Expression pattern of 93 c-cbl in WT zebrafish. (K–L) RT-PCR product sequencing of 94 uninjected WT embryos or c-cbl-splicing MO-injected embryos. 95 96 Supplementary Figure 5. 97 Vascular morphology of c-cbl–splicing MO-injected 5 dpf 98 embryos. (A–C) Uninjected embryo of transgenic zebrafish 99 with flk1 labled by mCherry (flk1: mCherry). (D–F) 100 c-cbl-splicing MO-injected embryo in Tg (flk1: mCherry). 101 Caudal vessels (CV), dorsal longitudinal anastomotic vessel 102 (DLAV), dorsal aorta (DA), posterior cardinal vein (PCV), 103 intersegmental vessels (ISV), caudal aorta (CA), and caudal vein 104 (CV). 105 106 Supplementary Figure 6. 107 Increased proliferation of HSPCs from 3 dpf in LDD731. 108 (A–H) Confocal image of c-myb+ and pH3+ cells in CHT 109 between homozygous LDD731 mutants and their siblings at 3 110 dpf. pH3+ cells were labeled with GFP and c-myb+ cells with 111 RFP. (I) Statistical analysis of the numbers of pH3+ cells in 6 112 CHT between homozygous LDD731 mutants and their siblings 113 at 3 dpf. (J) Statistical analysis of pH3+ cells and c-myb+ cells 114 at CHT in homozygous LDD731 mutants and their siblings at 3 115 dpf (t-test, p<0.05). 116 117 Supplementary Figure 7. 118 Validation of the CBL-FLT3 pathway. (A–D) Wild-type 119 embryos were treated with or without PKC412 or Lestaurtinib at 120 2–5 dpf and fixed for c-myb in situ hybridization. 121 122 Supplementary Movie 1 123 Circulation of CHT region of 5 dpf in heterozygous LDD731 124 siblings or wild type siblings. Caudal aorta (CA); Caudal vein 125 (CV). 126 127 Supplementary Movie 2 128 Circulation of CHT region of 5 dpf in homozygous LDD731 129 mutants. Caudal aorta (CA); caudal vein (CV). 130 7