Doris Wu (4/06) Whole-mount HCA staining 1) Dissect inner ears and puncture some holes in the membranous labyrinth if necessary. 2) Pre-incubate with DMEM-10% FCS + 0.4% Triton (MFT) in 12-well plates for several hours at room temp. 3) Incubate with anti-HCA antibody at1:5000 dilution in MFT at 4C for 24 hours. 4) Wash with PBS with 0.1% Triton (PBT) all day long and overnight. 5) Incubate with biotinylated anti-mouse (Vector Laboratories) at 1:500 dilution in MFT for 24 hours. 6) Wash with PBT overnight at 4C. 7) Incubate with Streptavidin-AP (Zymed) at 1:500 dilution using SA dilution buffer overnight at 4C. 8) Wash with PBT all day long at RT. 9) Wash with pre-detection buffer 3 times, 10-15 min each 10) Incubate with reaction mixture and check reaction every 5 min. Should take 10-15 min or so. The anti-HCA antibody usually has very little or no background. 11) Stop reaction in a PBT-EDTA solution (PBT + 1mM EDTA) * All day-time incubation and washes are done at room temp and all overnights are done in the cold room or refrigerator. Solutions: PBT 200 ml 20 ml 1780 ml 10xPBS 10% Triton distilled water SA Dilution buffer (0.1% BSA, 5 mM EDTA, 0.5 % Triton X-100, 1x PBS) 0.5 gm BSA 5 ml 0.5 M EDTA 25 ml 10% Triton-X100 50 ml 10x PBS 420 ml distilled water Pre-detection buffer (100 mM Tris pH 8.8, 100 mM NaCl, 5mM MgCL2) 20 ml 1M Tris pH 8.8 4 ml 5 M NaCL 1 ml 5 mM MgCL2 Detection solution 50 ug BCIP (5-bromo-4-chloro-3-indolyl phosphate) 5 mg nitroblue tetrazolium (optional) in 5 ml pre-detection buffer