NBAF Complete bibliography
[2010]
Please note that the list of publications for 2010 will only be completed in early 2011.
(*= papers arising from R&D)
[NBAF-B]
1.
2.
Scown, T.M., Goodhead, R., Johnston, B.D., Moger, J., J.R.Lead, vanAerle, R., Iguchi, T., Tyler, C.R (2009).
An assessment of cultured fish hepatocytes for screening cellular uptake and (eco)toxicity of nanoparticles.
Environmental Chemistry Accepted, In Press
Scown,T.M., Santos, E., Johnston, B.D.,Gaiser,B., Baalousha, M., Mitov, S., Lead, J.R., Stone, V., Fernandes,
T.F., Jepson, M., van-Aerle, R., and Tyler, C.R (2010) Effects of Aqueous Exposure to Silver Nanoparticles
of Different Sizes in Rainbow Trout Toxicological Sciences In final revision
[NBAF-E]
1.
2.
Ács, Z et al (in press). Phylogeny and DNA barcoding of inquiline oak gallwasps (Hymenoptera: Cynipidae)
of the Western Palaearctic. Mol Phyl Evol
Nicholls JA et al (in press) Concordant phylogeography and cryptic speciation in two Western Palaearctic oak
gall parasitoid species complexes. Mol. Ecol.
[NBAF-L]
1.
Andre J, King RA, Stürzenbaum SR, Kille P, Hodson ME Morgan AJ (in press) The evolution of Pb resistance
by earthworms in a patchy polluted landscape: mimicking Ca and mutating an intracellular Ca transporter
(SERCA). Environmental Pollution. 158, 883-890.
2. Craft JA, Gilbert JA, Temperton B, Dempsey KE, Ashelford K, Tiwari B, Hutchinson TH, Chipman JK
(2010). Pyrosequencing of Mytilus galloprovincialis cDNAs: tissue- specific expression patterns. PLoS One.
5(1): e8875. doi:10.1371/journal.pone.0008875.
3. Gilbert JA, Field D, Swift P, Newbold L, Oliver A, Smyth T, Somerfield P, Huse S, Joint I (2010) Seasonal
succession of microbial communities in the Western English Channel using 16S rDNA-tag pyrosequencing.
Environmental Microbiology. Epub ahead of print.
4. Harris, C.,Hamilton, P.B., Runnals, T., Jobling, S., Vinciotti, V., Henshaw, A., Hodgson, D.J., Coe, T.,Tyler
C.R, Sumpter, J.P (2010). Intersexuality can reduce reproductive performance in a group spawning fish.
5. Lange, A. Chatziandreou, N., Fang, Y., E. Wit, Li, W., Hughes, M.A., Williams, D.R., Tyler, C.R. and
A.R.Cossins (2010). Microarray-based gender-discrimination of roach subjected to endocrine disruption.
6. Lange, A. Paull, G.C., Hamiltion, P.B., Iguchi, T. and Tyler, C.R. (2010). Breeding disruptions in roach,
Rutilus rutlius, resulting from life-long exposure to treated wastewater effluent.
7. Nicholls JA et al. & Stone GN (in press) Concordant phylogeography and cryptic speciation in two Western
Palaearctic oak gall parasitoid species complexes. Molecular Ecology.
8. Pountney, A., Hobbs, G., Tyler, C.R., Stevens J.R. (2010). Haplotypes inform on impact of captive breeding
programmes on breeding programmes on wild English otter (Lutra lutra) populations. A case study of the
River Itchen in Hampshire.
9. Santos, E.M., Coe, T.S., Hamilton, P.B.,Ball, J., Williams, T., Katsiadaki, I, Falciani, F., Viant, M.R.,
Chipman, J.K., Tyler, C.R. (2010). Evidence of genetic bottlenecks in stickleback populations living in
polluted UK Rivers.
10. Schriml LM, Arze C, Nadendla S, Ganapathy A, Felix V, Mahurkar A, Phillippy K, Gussman A, Angiuoli S,
Ghedin E, White O, Hall N. (2010) GeMInA, genomic metadata for infectious agents, a geospatial surveillance
pathogen database. Nucleic Acids Research, 38, D754 - D764.
11. Yasmin, A, Kenny, JG, Shankar, J, Darby, AC, Hall, N, Edwards, C, Horsburgh, MJ. (2010) Comparative
genomics and transduction potential of Enterococcus faecalis temperate bacteriophages. Journal of
Bacteriology, 192, 1122 - 1130.
[NBAF-S]
1.
*Ball AD, Stapley J, Dawson DA, Birkhead TR, Burke T, Slate J (2010) A comparison of SNPs and
microsatellites as linkage mapping markers: lessons from the zebra finch (Taeniopygia guttata). BMC
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Genomics, (in press).
Bourke BP, Frantz AC, Lavers CP, Davison A, Dawson DA, Burke TA (2010) Genetic signatures of
population change in the British golden eagle (Aquila chrysaetos). Conservation Genetics (in press).
Clegg SM and Phillimore AB (2010) The influence of gene flow and drift on genetic and phenotypic
divergence in two species of Zosterops in Vanuatu. Phil Trans R Soc B (in press)
Couvillon MJ, Hughes WOH, Perez-Sato JA, Martin SJ, Ratnieks FLW (2010) Sexual selection in honeybees:
colony variation and the importance of size in male mating success. Behavioral Ecology. (in press).
*Dawson DA, Horsburgh GJ, Küpper C, Stewart IRK, Ball AD, Durrant KL, Hansson B, Bacon I, Bird S,
Klein Á, Lee J-W, Martín-Gálvez D, Simeoni M, Smith G, Spurgin LG, Burke T (2010) New methods to
identify conserved microsatellite loci and develop primer sets of high utility – as demonstrated for birds.
Molecular Ecology Resources, 10, 475–494.
Dugdale HL, Nouvellet P, Pope LC, Burke T, Macdonald DW (2010) Fitness measures in selection analyses:
sensitivity to the overall number of offspring produced in a lifetime. Journal of Evolutionary Biology. (in
press)
Durrant KL, Dawson DA, Burke T, Birkhead TR (2010) The unusual sperm morphology of the Eurasian
Bullfinch (Pyrrhula pyrrhula) is not due to the phenotypic result of genetic reduction. Auk (in press).
*Frantz AC, Do Linh San E, Pope LC, Burke T (2010) Using genetic methods to investigate dispersal in two
badger (Meles meles) populations with different ecological characteristics. Heredity, (in press).
Frantz AC, Pope LC, Etherington TR, Wilson GJ, Burke T (2010) Using isolation-by-distance-based
approaches to assess the barrier effect of linear landscape elements on badger (Meles meles) dispersal.
Molecular Ecology, 19, 1663-1674.
*Hansson B, Ljungqvist M, Dawson DA, Mueller JC, Olano-Marin J, Ellegren H, Nilsson J-Å (2010) Avian
genome evolution: insights from a linkage map of the blue tit (Cyanistes caeruleus). Heredity, (in press).
Hlaing T, Tun-Lin W, Somboon P, Socheat D, Setha T, Min S, Thaung S, Anyaele O, de Silva B, Chang MS,
Walton C (2010) Spatial genetic structure in Aedes aegypti mosquitoes in mainland Southeast Asia.
Evolutionary Applications (in press).
Johnson PCD, Hadfield JD, Webster LMI, Adam A, Mable BK, Keller LF (2009) Bayesian paternity analysis and
mating patterns in a parasitic nematode, Trichostrongylus tenuis. Heredity, doi: 10.1038/hdy.2009.139
*Lee J-W, Simeoni M, Burke T, Hatchwell BJ (2010) The consequences of winter flock demography for
genetic structure and inbreeding risk in vinous-throated parrotbills, Paradoxornis webbianus. Heredity, (in
press). doi: 10.1038/hdy.2009.135
*Lifjeld JT, Marthinsen G, Myklebust M, Dawson DA, Johnsen A (2010) A wild Marsh Warbler × Sedge
Warbler hybrid (Acrocephalus palustris × A. schoenobaenus) in Norway documented with molecular markers.
Journal of Avian Biology, (In press).
*Olano-Marin J, Dawson DA, Girg A, Hansson B, Ljungqvist M, Kempenaers B, Mueller JC (2010) A
genome-wide set of 106 microsatellite markers for the blue tit (Cyanistes caeruleus). Molecular Ecology
Resources, (In press).
*Pillay K, Dawson DA, Horsburgh GJ, Perrin MR, Burke T, Taylor TD (2010) Twenty-two polymorphic
microsatellite loci aimed at detecting illegal trade in the Cape parrot Poicephalus robustus (Psittacidae,
AVES). Molecular Ecology Resources, 10, 142–149.
Price TAR, Lewis Z, Smith DT, Hurst GDD, Wedell N (in press) Sex ratio drive promotes sexual conflict and
sexual coevolution in the fly Drosophila pseudoobscura. Evolution.
Rodríguez-Muñoz R, Bretman A, Slate J, Walling CA, Tregenza T (2010) Natural and Sexual Selection in a
wild insect population. Science, 328, 1269.
Thaxter CB, Wanless S, Daunt F, Harris MP, Benvenuti S, Watanuki Y, Gremillet D, Hamer KC (2010)
Influence of wing loading on trade-off between pursuit-diving and flight in common guillemots and razorbills.
Journal of Experimental Biology, in press.
OTHER
Lewis G. Spurgin, prize-winning poster “How Pathogens Drive Genetic Diversity in Wild Populations”, Popgroup January
2010, Liverpool.
THESES
Pagarete (due March 2010) NBAF-L 117
2
[2009] 96 (2 + 14 + 36 + 20 + 5 + 19)
[Joint]
1.
2.
Allen M, Cossins A, Hall N, Blaxter M, Burke T, Field D (2009) Use of microarrays to study environmentally
relevant organisms: a UK perspective. Environmental Research Journal, 3, 465-480. [NBAF Edinburgh,
Liverpool and Sheffield nodes].
Gilbert JA, Thomas S, Cooley NA, Kulakova A, Field D, Booth T, McGrath JW, Quinn JP, Joint I (2009)
Potential for phosphonoacetate utilisation by marine bacteria in temperate coastal waters. Environmental
microbiology, 11, 111-25. [NBAF Edinburgh and Liverpool nodes].
[NBAF-L] 14
1. Bontell I, Hall N, Ashelford KE, Dubey JP, Boyle JP, Lindh J, Smith JE (2009) Whole genome sequencing of
a natural recombinant Toxoplasma gondii strain reveals chromosome sorting and local allelic variants. Genome
Biology, 10, r53. doi:10.1186/gb-2009-10-5-r53
2. Filatov DA (2009) Processing and population genetic analysis of multigenic datasets with ProSeq3 software.
Bioinformatics, 25, 3189-3190.
3. Li W, Gracey AY, Mello LV, Brass A, Cossins AR (2009) ExprAlign - the identification of ESTs in nonmodel species by alignment of cDNA microarray expression profiles. BMC Genomics, 10, 560.
4. Mello, LV, O'Meara, H, Rigden, DJ and Paterson, S (2009) Identification of novel aspartic proteases from
Strongyloides ratti and characterisation of their evolutionary relationships, stage-specific expression and
molecular structure. BMC Genomics, 10, 611. dx.doi.org/doi:10.1186/1471-2164-10-611.
5. Millard A, Zwirglmaier K, Downey MJ, Mann NH, Scanlan DJ (2009) Comparative genomics of marine
cyanomyoviruses reveals the widespread occurrence of Synechococcus host genes localized to a hyperplastic
region: implications for mechanisms of cyanophage evolution. Environmental Microbiology, 11, 2370-2387.
6. Olohan, LA, Li W, Wulff, T, Jarmer H, Gracey AY, Cossins, AR (2009) Detection of anoxia-responsive genes in
cultured cells of the rainbow trout Oncorhynchus mykiss (Walbaum), using an optimized, genome-wide
oligoarray. Journal of Fish Biology, 76, 2170–2186.
7. Popesku JT, Martyniuk CJ, Mennigen J, Xiong HL, Zhang DP, Xia XH, Cossins AR, and Trudeau VL. (2009)
The goldfish (Carassius auratus) as a model for neuroendocrine signalling. The goldfish as a model in
neuroendocrine signalling. Molecular and Cellular Endocrinology, 293, 43-56.
8. Quince C, Lanzén A, Curtis TP, Davenport RJ, Hall N, Head IM, Read LF, Sloan WT (2009) Accurate
determination of microbial diversity from 454 pyrosequencing data. Nature Methods, 6, 639–641.
9. Reilly SC, Kipar A, Hughes DJ, Quinn JP, Cossins AR and Sneddon LU (2009) Investigation of Van Goghlike 2 mRNA regulation and localisation in response to nociception in the brain of adult common carp
(Cyprinus carpio). Neuroscience Letters, 465, 290-294.
10. Reilly, SC, Quinn JP, Cossins AR and Sneddon LU (2009) Behavioural analysis of a nociceptive event in fish:
Comparisons between three species demonstrate specific responses. Applied Animal Behaviour Science, 114,
248-259.
11. Temperton, B, Field, D, Oliver, A, Tiwari, B, Muhling, M, Joint, I, Gilbert, JA (2009) Bias in assessments of
marine microbial biodiversity in fosmid libraries as evaluated by pyrosequencing. ISME Journal, 3, 792-796.
12. Weynberg KD, Allen MJ, Ashelford K, Scanlan DJ, Wilson WH (2009) From small hosts come big viruses: the
complete genome of a second Ostreococcus tauri virus, OtV-1. Environmental Microbiology, 11, 2821-2839.
13. Williams DR, Li W, Hughes MA, Gonzalez SF, Vernon C, Vidal MC, Jeney ZJ, Jeney G, Dixon P, McAndrew
B, Bartfai R, Orban L, Trudeau V, Rogers J, Matthews L, Fraser EJ, Gracey AY, Cossins AR (2009) Genomic
resources and microarrays for the common carp Cyprinus carpio L. Journal of Fish Biology, 72, 2095–2117.
14. Zhang D, Xiong H, Mennigen JA, Popesku JT, Marlatt VL, Martyniuk CJ, Crump K, Cossins AR, Xia X,
Trudeau VL (2009) Defining global neuroendocrine gene expression patterns associated with reproductive
seasonality in fish. PLoS One, 4, e5816.
[NBAF-S] 36
1. Ahmed S, Hart T, Dawson DA, Horsburgh GJ, Trathan PN, Rogers AD (2009) Isolation and characterization
of macaroni penguin Eudyptes chrysolophus microsatellite loci and their utility in other penguin species.
Molecular Ecology Resources, 9, 1530-1535.
2. Ahmed S, Compton SG, Butlin RK, Gilmartin PM (2009) Wind-borne insects mediate directional pollen
transfer between desert fig trees 160 kilometers apart. PNAS, 106, 20342-20347.
3. Bataille A, Cunningham AA, Virna Cedeñod Leandro Patiño, Constantinou A, Kramer LD, Goodman SJ
(2009) Natural colonisation and adaptation of a mosquito species in Galápagos: implications for disease threats
to endemic wildlife. PNAS, 106, 10230-10235.
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Bataille A, Horsburgh GJ, Dawson DA, Cunningham AA, Goodman SJ (2009) Microsatellite markers
characterized in the mosquito Aedes taeniorhynchus (Diptera, Culicidae), a disease vector and major pest on
the American coast and the Galápagos Islands. Infection, Genetics and Evolution, 9, 971-975.
Bataille A, Cunningham AA, Cedeño V, Cruz M, Eastwood G, Fonseca DM, Causton CE, Azuero R, Loayza
J, Martinez JD, Goodman SJ (2009) Evidence for regular ongoing introductions of mosquito disease vectors
into the Galápagos Islands. Proceedings of the Royal Society B, 276, 3769-3775.
Brekke P, Dawson DA, Horsburgh GJ, Ewen J (2009) Characterization of microsatellite loci in the hihi
(Stitchbird) Notiomystis cincta (Notiomystidae (Meliphagidae), AVES) Molecular Ecology Resources, 9,
1255-1258.
Bretman A, Newcombe D, Tregenza T (2009) Promiscuous females avoid inbreeding by controlling sperm
storage. Molecular Ecology, 18, 3340-3345.
Craul M, Chikhi L, Olivieri G, Rabesandratana A, Zimmermann E and Radespiel U (2009) Influence of forest
fragmentation on an endangered large-bodied lemur in northwestern Madagascar - Implications for conservation.
Biological Conservation, 142, 2862-2871.
Craul M, Dawson DA, Radespiel U, Zimmermann E, Bruford MW (2009) Isolation of sixteen autosomal loci and
a sex-linked polymorphic microsatellite locus from the Milne-Edwards’ sportive lemur. Molecular Ecology
Resources, 9, 333–335.
*Evans KL, Gaston KJ, Frantz AC, Simeoni M, Sharp SP, McGowan A, Dawson DA, Walasz K, Partecke J,
Burke T, Hatchwell BJ (2009) Independent colonisation of multiple urban centres by a formerly forest bird
species. Proceedings of the Royal Society of London B, 276, 2403-2410.
*Evans KL, Gaston KJ, Sharp SP, McGowan A, Simeoni M, Hatchwell BJ (2009) Effects of urbanisation on
disease prevalence and age structure in blackbird Turdus merula populations. Oikos, 118, 774-782.
Ewen JG, Thorogood R, Brekke P, Cassey P, Karadas F, Armstrong DP (2009) Maternally invested carotenoids
compensate costly ectoparasitism in the hihi. PNAS, 106, 12798–12802.
Flanders J, Jones G, Benda P, Dietx C, Zhang S, Li G, Sharifi M and Rossiter SJ (2009) Phylogeography of the
greater horseshoe bat, Rhinolophus ferrumequinum: contrasting results from mitochondrial and microsatellite
data. Molecular Ecology, 18, 306-318.
*Frantz AC, Proess R, Burke T, Schley L (2009) A genetic assessment of the two remnant populations of the
natterjack toad (Bufo calamita) in Luxembourg. Herpetological Journal, 19, 53-59.
*Frantz AC, Cellina S, Krier A, Schley L, Burke T (2009) Using spatial Bayesian methods to determine the
genetic structure of a continuously distributed population: clusters or isolation by distance? Journal of Applied
Ecology, 46, 493-505.
Griffiths AM, Bright D, Stevens JR (2009) Comparison of patterns of genetic variability in wild and supportively
bred stocks of brown trout, Salmo trutta. Fisheries Management and Ecology, 16, 514–519.
Griffiths AM, Koizumi I, Bright D, Stevens JR (2009) A case of isolation by distance and short-term temporal
stability of population structure in brown trout (Salmo trutta) within the River Dart, southwest England.
Evolutionary Applications, 2, 537–554.
Groombridge JJ, Dawson DA, Burke T, Prys-Jones R, Brooke M de L, Shah N (2009) Evaluating the
demographic history of the Seychelles kestrel (Falco araea): Genetic evidence for recovery from a population
bottleneck following minimal conservation management. Biological Conservation, 142, 2250-2257.
*Guillot G, Leblois R, Coulon A, Frantz AC (2009) Statistical methods in spatial genetics. Molecular Ecology,
18, 4734-4756.
Hewitt S, Macdonald DW & Dugdale HL (2009) Context-dependent linear dominance hierarchies in social
groups of European badgers, Meles meles. Animal Behaviour, 77, 161–169.
*Johanet A, Picard D, Garner TWJ, Dawson DA, Morales-Hojas R, Jehle R, Peltier D, Lemaire C (2009)
Characterization of microsatellite loci in two closely related Lissotriton newt species. Conservation Genetics, 18,
54-63.
Johnson JA, Tingay RE, Culver M, Hailer F, Clarke ML, Mindell DP (2009) Long-term survival despite low
genetic diversity in the critically endangered Madagascar fish-eagle. Molecular Ecology, 18, 54-63.
*Klein A, Horsburgh GJ, Küpper C, Major A, Lee PLM, Hoffmann G, Mátics R, Dawson DA (2009)
Microsatellite markers characterized in the barn owl (Tyto alba) and of high utility in other owls (Strigiformes:
AVES). Molecular Ecology Resources, 9, 1512-1519.
Kosztolányi A, Javed S, Küpper C, Cuthill IC, Al Shamsi A, Székely T (2009) Breeding ecology of Kentish
Plover Charadrius alexandrinus in an extremely hot environment. Bird Study, 56, 244-252.
Küpper C, Augustin J, Kosztolányi A, Burke T, Figuerola J, Székely T (2009) Kentish versus snowy plover:
Phenotypic and genetic analyses of Charadrius alexandrinus reveal divergence of Eurasian and American
subspecies. Auk, 126, 839-852.
*Lee JW, Jang BS, Dawson DA, Burke T, Hatchwell BJ (2009) Fine-scale genetic structure and its consequence
in breeding aggregations of a passerine bird. Molecular Ecology, 18, 2728–2739.
*Lee J-W, Kim M-S, Burke T, Hatchwell BJ (2009) Extrapair paternity in a flock-living passerine, the vinousthroated parrotbill Paradoxornis webbianus. Journal of Avian Biology, 40, 469-474.
Lucas ER, Horsburgh GJ, Dawson DA, Field J (2009) Characterization of microsatellite loci isolated from the
wasp Microstigmus nigrophthalmus (Hymenoptera). Molecular Ecology Resources, 9, 1492-1497.
4
29. *Martin-Galvez D, Dawson DA, Horburgh GJ, Burke T (2009) Isolation, characterization and chromosome
locations of polymorphic black-billed magpie Pica pica (Corvidae, AVES) microsatellite loci. Molecular Ecology
Resources, 9, 1506-1512.
30. *Meares K, Dawson DA, Horsburgh GJ, Glenn TC, Jones KL, Braun MJ, Perrin MR, Taylor TD (2009)
Microsatellite loci characterized in three African crane species (Gruidae, AVES). Molecular Ecology Resources,
9, 308-311.
31. Phillips RA, Bearhop S, Mcgill RAR, Dawson DA (2009) Stable isotopes reveal individual variation in migration
strategies and habitat preferences in a suite of seabirds during the nonbreeding period. Oecologia, 160. 795–806.
32. Raisin C, Dawson DA, Greenwood AG, Jones CG, Groombridge J (2009) Characterization of Mauritius
parakeet (Psittacula eques) microsatellite loci and their cross-utility in other parrots (Psittacidae, AVES).
Molecular Ecology Resources, 9, 1231-1235.
33. Silvertown J, Biss PM & Freeland J (2009) Community genetics: resource addition has opposing effects on
genetic and species diversity in a 150-year experiment. Ecology Letters, 12, 165-170.
34. Simeoni M, Dawson DA, Gentle L, Coiffait L, Wolff K, Evans KL, Gaston K, Hatchwell BJ (2009)
Characterization of 38 microsatellite loci in the blackbird Turdus merula (Turdidae, AVES). Molecular Ecology
Resources, 9, 1520-1526.
35. Thaxter CB, Daunt F, Hamer KC, Watanuki Y, Harris MP, Gremillet D, Peters G, Wanless S (2009) Sex-specific
food provisioning in a monomorphic seabird: nest defence, foraging efficiency or parental effort? Journal of
Avian Biology, 40, 75-84.
36. Wright JA, Barker RJ, Schofield MR, Frantz AC, Byrom AE, Gleeson DM (2009) Incorporating genotype
uncertainty into mark-recapture-type models for estimating abundance using DNA samples. Biometrics, 65, 833840.
[NBAF-E] 20
1. Amin SA, Green DH, Hart MC, Küpper FC, Sunda WG, Carrano CJ (2009) Photolysis of iron-siderophore
chelates promotes bacterial-algal mutualism. PNAS, 106, 17071-17076.
2. Casewell NR, Harrison RA, Wuester W, Wagstaff SC (2009) Comparative venom gland transcriptome surveys of
the saw-scaled vipers (Viperidae: Echis) reveal substantial intra-family gene diversity and novel venom
transcripts. BMC Genomics. 10, 564.
3. Gachon CMM, Strittmatter M, Müller DG, Kleinteich J, Küpper FC, (2009) Detection of differential host
susceptibility to the marine oomycete pathogen Eurychasma dicksonii detected by real time PCR: not all algae
are equal. Applied and Environmental Microbiology, 75, 322-8.
4. Hegarty MJ, Barker GL, Brennan AC, Edwards KJ, Abbott RJ, Hiscock SJ (2009) Extreme changes to gene
expression associated with homoploid hybrid speciation. Molecular Ecology, 18, 877-889.
5. Johnston IA, Lee HT, Macqueen DJ, Paranthaman K, Kawashima C, Anwar A, Kinghorn JR, Dalmay T (2009)
Embryonic temperature affects muscle fibre recruitment in adult zebrafish: genomewide changes in gene and
microRNA expression associated with the transition from hyperplastic to hypertrophic growth phenotypes. The
Journal of Experimental Biology, 212,1781-1793.
6. Kalujnaia S, Powell B, Osborne CJ, Martinez A-S, Cutler CP, Cramb G (2009) Intestinal expression of
Aquaporins in the European eel Anguilla Anguilla: effects of SW acclimation on isoform expression. Glasgow,
2009. Comp. Biochem. Physiol. A3.4, S78.
7. Kalujnaia S, Osborne CJ, Cramb G (2009) Osmolytes and osmoregulation in the euryhaline European eel,
Anguilla anguilla. SEB, Glasgow, 2009. Comp. Biochem. Physiol. A3.14, S81.
8. Kalujnaia S, Cramb G (2009) Regulation of expression of the myo-inositol mono-phosphatase 1 (IMPA1) gene
in osmoregulatory tissues of the European eel Anguilla anguilla after sea water acclimation. Ann. N.Y. Acad
Sci, 1163, 433-436.
9. Kalujnaia S, Wilson GD, Feilen AL, Cramb G (2009) Guanylin-like peptides, guanylate cyclase and
osmoregulation in the European eel (Anguilla anguilla). Gen. Comp. Endocrinol. 161, 103-114.
10. Keightley PD, Trivedi U, Thomson M, Oliver F, Kumar S, Blaxter ML (2009) Analysis of the genome
sequences of three Drosophila melanogaster spontaneous mutation accumulation lines. Genome Research, 19,
1195-201.
11. Last KS, Bailhachet T, Kramer C, Kyriacou CP, Rosato E, Olive PJW (2009) Tidal, daily, and lunar-day
activity cycles in the marine polychaete Nereis virens. Chronobiology International, 26, 167-183.
12. Lepère C, Vaulot D, Scanlan DJ (2009). Photosynthetic picoeukaryote community structure in the South East
Pacific Ocean encompassing the most oligotrophic waters on Earth. Environmental Microbiology, 11, 31053117.
13. Marsden CD, Mable BK, Woodroffe R, Rasmussen GSA, Cleaveland S, McNutt JW, Thomas R, Kennedy LJ
(2009) Highly endangered African wild dogs (Lycaon pictus) lack variation at the Major Histocompatibility
Complex. Journal of Heredity, 100, Suppl 1, S54-S65.
14. McTaggart SJ, Conlon C, Colbourne JK, Blaxter ML, Little TJ (2009) The components of the Daphnia pulex
immune system as revealed by complete genome sequencing. BMC Genomics, 10, 175.
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15. Osuna-Jimenez I, Williams TD, Prieto-Alamo MJ, Abril N, Chipman JK, Pueyo C (2009) Immune- and stressrelated transcriptomic responses of Solea senegalensis stimulated with lipopolysaccharide and copper sulphate
using heterologous cDNA microarrays. Fish and Shellfish Immunology, 26, 699-706.
16. Quicke DLJ, Laurenne NM, Fitton MG, Broad GR (2009) A thousand and one wasps: a 28S rDNA and
morphological phylogeny of the Ichneumonidae (Insecta: Hymenoptera) with an investigation into alignment
parameter space and elision. Journal of Natural History, 43, 1305-1421.
17. Stone GN, Hernandez-Lopez A, Nicholls JA, di Pierro E, Pujade-Villar J, Melika G, Cook JM (2009) Extreme
host plant conservatism during at least 20 million years of host plant pursuit by oak gallwasps. Evolution, 63,
854-869.
18. Sturzenbaum SR, Andre J; Kille P, et al (2009) Earthworm genomes, genes and proteins: the (re)discovery of
Darwin's worms. PRSB, 276, 789-797.
19. Weinert LA, Werren JH, Aebi A, Stone GN, Jiggins FM (2009) Evolution and diversity of Rickettsia bacteria.
BMC Biology, 7, 6.
20. Williams TD, Wu Huifeng, Santos EM, Ball J, Katsiadaki I, Brown MM, Baker P, Ortega F, Falciani F, Craft
JA, Tyler CR, Chipman JK, Viant MR (2009) Hepatic transcriptomic and metabolomic responses in the
stickleback (Gasterosteus aculeatus) exposed to environmentally-relevant concentrations of dibenzanthracene.
Environmental Science Technology, 43, 6341–6348.
CHAP / BOOK (1)
1. Li W, Olohan L, Williams D, Hughes MA, Gracey AY and Cossins, AR Application of ESTs in Microarray
Analysis in Expressed Sequence Tags (ESTs): Generation and Analysis. Methods in Molecular Biology:
Methods and Protocols, vol 533 (Edited by Parkinson J). Humana Press, Boca Raton.
OTHER (4)
2. Kalujnaia S, Cramb G (2009) Myo-Inositol monophosphatase, inositol production and osmoregulation in the
euryhaline European eel, Anguilla Anguilla. FASEB journal, 23, 629.6 [Refereed but non ISI – NBAF-E].
3. Kapralov MV, Stift M and Filatov DA (2009) Evolution of genome size in Hawaiian endemic genus Schiedea.
Tropical Plant Biology, 2, 77-83. [Refereed but non ISI – NBAF-L].
4. Marsden, C (2009) ‘Hair of the dog.’ Planet Earth, May 2009. [NBAF-E]
5. Viant, M (2009) ‘The fat of the land’. Planet Earth, Spring 2009. [NBAF-B]
THESES (19)
1. Bataille A. (2009) PhD Thesis (University of Leeds/ Institute of Zoology of London). Population genetics and
disease ecology of mosquito spp. in Galapagos. [NBAF-S]
2. Bontell EI. (2009) PhD Thesis (University of Leeds) Genetic and Biological characterisation of Toxoplasma
gondii in Uganda. . [NBAF-E/L]
3. Brekke P. (2009) PhD Thesis (Imperial College, University of London) Conservation genetics of an Island
endemic bird, the hihi (Notiomystis cincta). [NBAF-S]
4. Craul M. (2009) PhD Thesis (University of Cardiff / Leibniz Universitaet Hanover, Germany) Molecular
phylogenetics and conservation genetics of sportive lemurs (Lepilemur edwardsi) in northwestern Madagascar.
[NBAF-S]
5. Ferguson L. (2009) PhD Thesis (University of Cambridge) The genetic basis of wing patterning in the mimetic
butterfly, Heliconius melpomene. [NBAF-L]
6. Hlaing T. (2009) PhD Thesis (University of Manchester) Genetic population structure and gene flow in Aedes
aegypti mosquitoes in Southeast Asia. [NBAF-S]
7. Hutchings K. (2009) PhD Thesis (University of East Anglia) Gastrointestinal parasites, MHC genes and fitness
in a wild avian population. [NBAF-S]
8. *Klein A. (2009) PhD Thesis (The Barn Owl Foundation, Hungary) The possible effects of extreme winters on
the barn owl (Tyto alba Scop., 1769) population in Hungary: survival, physiology and population genetics.
[NBAF-S]
9. Lucas E. (2009) PhD Thesis (University College London) Social Structure and Evolution of the Apoid Wasp
Microstigmus nigrophthalmus. [NBAF-S]
10. Mitchell TJ. (2009) PhD Thesis (University of Plymouth) Population genetics of Gracilariopsis longissima in
South West Britain. [NBAF-S]
11. Napper P. (viva date Dec 2009) PhD Thesis (Lancaster University) Ecological functional genomics: the
genetic basis of phenotypic plasticity in Daphnia pulex. [NBAF-L]
12. Qui Y. (2009) PhD Thesis (University of Leeds). The Distribution and Diversity of Parasites in Ancient
Species Flocks: Baikalian Amphipods & Microsporidian Parasites. [NBAF-E]
13. *Riou S. (2009) PhD thesis (University of Leeds) Regulation of parental effort and chick growth in Manx
shearwaters: behaviour, physiology and environmental variability. [NBAF-S]
14. Shorrock KA. (2009) PhD Thesis (Newcastle University) Physiological and molecular aspects of drought
6
resistance in Clusia. [NBAF-E]
15. Sinfield CA. (2009) PhD Thesis (University of Leeds) Dynamics of the Littorina saxatilis hybrid zone.
[NBAF-S]
16. Stevens K. (2009) MRes Marine Biology Thesis (University of Plymouth) A genomic approach to characterise
the lysogenic nature of Phaeoviruses. [NBAF-L]
17. Thaxter C. (2009) PhD Thesis (University of Leeds) Breeding and foraging ecology of guillemots and
razorbills: a comparison of two pursuit-diving seabirds. [NBAF-S]
18. Weynberg K (2009) PhD Thesis (Plymouth Marine Laboratory / University of Warwick) Isolation and
characterisation of marine viruses that infect nano- and picophytoplankton. [NBAF-L]
19. Wilkes TE (2009) University of Liverpool Biological and Genomic Studies of Arsenophonus, son-killer of
Nasonia vitripennis. [NBAF-L]
7
[2008]
[NBAF-L]
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6.
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15.
Allen MJ, Wilson WH (2008). Aquatic virus diversity accessed through omic techniques: A route map to
function. Current Opinion in Microbiology, 11, 226-232.
Allen MJ, Cossins AR, Hall N, Field D (2008) Use of Arrays with Non-Model Organisms: A UK Perspective. In:
Oligonucleotide Array Sequence Analysis. Eds. Martina K. Moretti and Lorenzo J. Rizzo.
Brownridge P, Vieira de Mello L, Peters L, McLean LAC, Cossins A, Whitfield P, Young I (2008) Regional
variation in parvalbumin isoform expression correlates with muscle performance in Common Carp (Cyprinus
carpio). Journal of Experimental Biology, 212, 184-193.
Cossins A, Berenbrink M. (2008) Physiology: Myoglobin's new clothes. Nature, 454, 416-7
Darby A, Hall N (2008) Fast forward genetics. Nature Biotechnology, 26, 1248-49.
Evans H, Mello LV, Fang Y, Wit E, Thompson FJ, Viney ME, Paterson S (2008) Microarray analysis of genderand parasite-specific gene transcription in Strongyloides ratti. International Journal for Parasitology, 8, 13291341.
Evans H, De Tomaso T, Quail M, Rogers J, Gracey A, Cossins A, Berenbrink M (2008) Ancient and modern
duplication events and the evolution of stearoyl-CoA desaturases in teleost fishes. Physiol Genomics, 35, 18-29.
Gilbert JA, Field D, Huang Y, Edwards R, Li W, et al. (2008) Detection of large numbers of novel sequences in
the metatranscriptomes of complex marine microbial communities. PLoS ONE, 3, e3042.
Gilbert JA, Mühling M, Joint I (2008) A SAR11 fosmid clone confirming genetic variability in the
‘Candidatus Pelagibacter ubique’ genome. ISME Journal, 2, 790-793.
Mable BK (2008) Genetic causes and consequences of the breakdown of self-incompatibility: case studies in the
Brassicaceae. Genetics Research, 90, 47-60.
Mennigen JA, Martyniuk CJ, Crump K, Xiong H, Zhao E, Popesku J, Anisman H, Cossins AR, Xia X, Trudeau
VL (2008) Effects of fluoxetine on the reproductive axis of female goldfish (Carassius auratus). Physiol
Genomics, 35, 273-82.
Olohan LA, Li W, Wolf T, Jarme HO, Gracey AY, Cossins AR (2008) Detection of anoxia-responsive genes in
cultured cells of the rainbow trout, Oncorhynchus mykiss, using an optimised, genome-wide oligoarray. Journal
of Fish Biology, 72, 2179-86.
Popesku JT, Martyniuk CJ, Mennigen J, Xiong H, Zhang D, Xia X, Cossins AR, Trudeau VL (2008) The
goldfish (Carassius auratus) as a model for neuroendocrine signaling. Mol Cell Endocrinology, 293, 43-56.
Reilly SC, Quinn JP, Cossins AR, Sneddon LU (2008) Novel candidate genes identified in the brain during
nociception in common carp (Cyprinus carpio) and rainbow trout (Oncorhynchus mykiss). Neuroscience
Letters, 437, 135-138.
Williams D, Li W, Hughes M, Gonzalez S, Vernon C, Vidall M, Jeney Z, Jeney G, Dixon P, McAndrew B et al
(2008) Genomic resources and microarrays for the common carp Cyprinus carpio L. Journal of Fish Biology, 72,
2095-2117.
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4.
5.
6.
7.
8.
Anderson SJE, Conrad KF, Gillman MP, Woiwod IP, Freeland JR (2008) Phenotypic changes and reduced
genetic diversity have accompanied the rapid decline of the garden tiger moth (Arctia caja) in the UK.
Ecological Entomology. 33, 638-645.
Bretman A, Dawson DA, Horsburgh GJ, Tregenza T (2008) New microsatellite loci isolated from the field
cricket Gryllus bimaculatus characterized in two cricket species, Gryllus bimaculatus and Gryllus campestris.
Molecular Ecology Resources, 8, 1015-1019.
Brownlow RJ, Dawson DA, Horsburgh GJ, Bell JJ, Fish JD (2008) A method for genotype validation and
primer assessment in heterozygote-deficient species, as demonstrated in the prosobranch mollusc Hydrobia
ulvae. BMC Genetics, 9, 55.
Burri R, Antoniazza S, Siverio F, Klein Á, Roulin A, Fumagalli L (2008) Isolation and characterization of 21
microsatellite markers in the barn owl (Tyto alba). Molecular Ecology Resources, 8, 977-979.
Chen S, Jones G, Rossiter SJ (2008) Sex-biased gene flow and colonisation in the Formosan lesser horseshoe
bat: inference from nuclear and mitochondrial markers. Journal of Zoology, 274, 207-215.
Dawnay N, Ogden R, Thorpe RS, Pope LC, Dawson DA, McEwing R (2008) A forensic STR profiling system
for the Eurasian badger: A framework for developing profiling systems for wildlife species. International
Journal of Legal Medicine. Forensic Science International: Genetics, 2, 47-53.
*Douaud M, Fève K, Gerus M, Fillon V, Bardes S, Gourichon D, Dawson DA, Hanotte O, Burke T, Vignoles
F, Morisson M, Tixier-Boichard M, Vignal A, Pitel F (2008) Addition of the microchromosome GGA25 to the
chicken genome sequence assembly through radiation hybrid and genetic mapping. BMC Genomics, 9, 129.
Dugdale HL, Macdonald DW, Pope LC, Johnson PJ & Burke T (2008). Reproductive skew and relatedness in
social groups of European badgers Meles meles. Molecular Ecology, 17, 1815–1827.
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*Frantz AC, Hamann J-L, Kleen F (2008) Fine-scale genetic structure of red deer (Cervus elaphus) in a French
temperate forest. European Journal of Wildlife Research, 54, 44-52.
Huck M, Frantz AC, Dawson DA, Burke T, Roper (2008) Low genetic variability, female biased dispersal and
high movement rates in an urban population of Eurasian badgers (Meles meles). Journal of Animal Ecology,
77, 905–915.
Küpper C, Burke T, Székely T, Dawson DA. (2008) Enhanced cross-species utility of conserved microsatellite
markers in shorebirds and allies. BMC Genomics, 9, 1015-1019.
*Meares K, Dawson DA, Horsburgh GJ, Perrin MR, Burke T, Taylor TD (2008) Characterisation of 14 blue
crane Grus paradisea (Gruidae, AVES) microsatellite loci for use in detecting illegal trade. Conservation
Genetics, 9, 1363-1367.
Phillimore AB, Owens IPF, Black RA, Chittock J, Burke T, Clegg SM. (2008) Complex patterns of divergence
in an island bird and the consequences for delimiting conservation units. Molecular Ecology, 17, 2839-2853
Price TAR and Wedell N (2008) Selfish genetic elements and sexual selection: their impact on male fertility.
Genetica, 132, 295-307.
Price TAR, Bretman AJ, Avent T, Snook RR, Hurst GDD, Wedell N (2008) Sex ratio distorter reduces sperm
competitive success in an insect. Evolution, 62, 644-1652.
Price TAR, Hodgson DJ, Lewis Z, Hurst GDD, Wedell N (2008) Selfish genetic elements promote polyandry
in a fly. Science, 322, 1241-1243.
Sharp SP, Simeoni M, Hatchwell BJ (2008) Dispersal of sibling coalitions promotes helping among
immigrants in a cooperatively breeding bird. Proceedings of the Royal Society of London B, 275, 2125-2130.
Sharp SP, Hadfield J, Baker MB, Simeoni M, Hatchwell BJ (2008) Natal dispersal and recruitment in a social
bird. Oikos, 117, 1371-1379.
Silvertown J, Biss PM, Freeland J (2008) Community genetics: resource addition has opposing effects on
genetic and species diversity in a 150-year experiment. Ecology Letters, 11, 1-6.
Struebig M, Horsburgh GJ, Pandhal J, Triggs A, Zubaid A, Kingston T, Dawson DA, Rossiter S (2008)
Isolation and characterisation of microsatellite loci in the papillose woolly bat, Kerivoula papillosa
(Chiroptera: Vespertilionidae). Conservation Genetics, 9, 751-756.
9
[NBAF-E]
1.
2.
3.
4.
5.
6.
7.
8.
9.
10.
11.
12.
13.
14.
15.
16.
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19.
Achilles-Day UEM, Pröschold T, Day JG (2008) Phylogenetic position of the freshwater ciliate Euplotes
daidaleos within the family of Euplotidae, obtained from small subunit rDNA gene sequence. Denisia, 23,
411-416.
Brown MM, Williams TD, Chipman JK, Katsiadaki I, Sanders M, Craft JA (2008) Construction of subtracted
EST and normalised cDNA libraries from liver of chemical-exposed three-spined stickleback (Gasterosteus
aculeatus) containing pollutant responsive genes as a resource for transcriptome analysis. Marine Environmental
Research, 66, 127-130.
Diab AM, Williams TD, Sabine VS, Chipman JK, George SG (2008) The GENIPOL European flounder
Platichthys flesus L. toxicogenomics microarray: application for investigation of the response to furunculosis
vaccination. Journal of Fish Biology, 72, 2154-2169.
Falciani F, Diab AM, Sabine VS, Williams TD, Ortega F, George SG, Chipman JK (2008) Hepatic
transcriptomic profiles of European flounder (Platichthys flesus) from field sites and computational approaches to
predict site from stress gene responses following exposure to model toxicants. Aquatic Toxicology, 90 92-101.
Foged Larsen P, Einar Eg Nielsen, Timothy David Williams and Volker Loeschcke (2008) Intraspecific variation
in expression of candidate genes for osmoregulation, heme biosynthesis and stress resistance suggests local
adaptation in European flounder (Platichthys flesus) Heredity, 101, 247-259.
Ford AT, Sambles C, Kille P (2008) Intersexuality in crustaceans: Genetic, individual and population level
effects. Marine Environmental Research, 66, 146-148.
Garnier S, Verduijn M, Preuss S, Wolff K, Stone GN (2008) Polymorphic microsatellite loci and interspecific
cross-amplification in the parasitoid wasps Megastigmus stigmatizans and Megastigmus dorsalis. Molecular
Ecology Resources, 8, 421-424.
Geoghegan F, Katsiadaki I, Williams TD, Chipman JK (2008) A cDNA Microarray for the three spined
stickleback, Gasterosteus aculeatus L., and analysis of the interactive effects of oestradiol and dibenzanthracene
exposures. Journal of Fish Biology, 72, 2133-2153.
Gilbert JA, Mühling M, Joint I (2008) A rare SAR11 fosmid clone confirming genetic variability in the
‘Candidatus Pelagibacter ubique’ genome. ISME Journal, 2, 790-793.
Gotz S, Garcia-Gomez JM, Terol J, Williams TD, Nagaraj SH, Nueda, Montserrat Robles MJ, Talon M, Dopazo
J, Conesa A (2008) High throughput functional annotation and data mining with the Blast2GO suite. Nucleic
Acids Research, 36 3420-35.
Hegarty MJ, Barker GL, Brennan AC, Edwards KJ, Abbott RJ, Hiscock SJ (2008) Changes to gene expression
associated with hybrid speciation in plants: further insights from transcriptomic studies in Senecio. Philosophical
Transactions of the Royal Society of London B, 363, 3055-3069.
Larsen PF, Nielsen EE, Williams TD & Loeschcke V (2008) Intraspecific variation in expression of candidate
genes for osmoregulation, heme biosynthesis and stress resistance suggests local adaptation in European
flounder (Platichthys flesus). Heredity, 101, 247–259.
Mable BK (2008) Genetic consequences of inbreeding: case studies in the Brassicaceae. Genetics Research,
90, 47-60.
Neufeld JD, Chen Y, Dumont MG, Murrell JC (2008) Marine methylotrophs revealed by stable-isotope
probing, multiple displacement amplification and metagenomics. Environmental Microbiology, 10, 1526–
1535.
Owen J, Hedley AB, Svendsen C, Wren J, Jonker MM, Hankard PK, Lister LJ, Sturzenbaum SR, Morgan AJ,
Spurgeon DJ, Blaxter M, Kille P (2008) Transcriptome profiling of developmental and xenobiotic responses in a
keystone soil animal, the oligochaete annelid Lumbricus rubellus. BMC Genomics, 9, 266.
Papanicolaou A, Gebauer-Jung S, Blaxter ML, Owen-McMillan W, Jiggins CD (2008) ButterflyBase: a
platform for lepidopteran genomics. Nucleic Acids Research, 36, 582-587 [T]
Quicke DLJ, Sharkey MJ, Laurenne NM & Dowling A (2008) A preliminary molecular phylogeny of the
Sigalphinae (Hymenoptera: Braconidae), including Pselaphanus Szépligeti, based on 28S rDNA, with
descriptions of new Afrotropical and Madagascan Minanga and Malasigalphus species. Journal of Natural
History, 42, 2703-2719.
Schmid R, Blaxter ML (2008) annot8r: rapid assignment of GO, EC and KEGG annotations. BMC
Bioinformatics, 9 180.
Stone GN, Atkinson RJ, Rokas A, Nieves-Aldrey J-L, Melika G, Ács Z, Csóka G, Hayward A, Bailey R,
Buckee C, McVean GAT (2008) Evidence for widespread cryptic sexual generations in apparently asexual
Andricus gallwasps. Molecular Ecology, 17, 652-665.
10
20. Svendsen C, Owen J, Kille P, Wren J, Jonker MJ, Hedley BA, Morgan AJ, Blaxter ML, Sturzenbaum SR,
Hankard PK, Lister LJ & Spurgeon DJ (2008) Comparative transcripomoic responses to chronic cadmium,
fluoranthene and atrazine exposure in Lumbricus rubellus. Environmental Science and Technology, 42, 4208–
4214.
21. Williams TD, Diab A, Ortega F, Sabine VS, Godfrey RE, Falciani F, Chipman JK, George SG (2008)
Transcriptomic responses of European flounder to model toxicants. Aquatic Toxicology, 90 83-91.
22. Yang G, Kille P, Ford AT (2008) Infertility in a marine crustacean: Have we been ignoring pollution impacts
on male invertebrates? Aquatic Toxicology, 88, 81-87.
23. Zaldivar-Riveron A, Shaw MR, Saez AG, Mori M, Belokobylskij SA, Shaw SR, Quicke DLJ (2008) Evolution
of the parasitic wasp subfamily Rogadinae (Braconidae): phylogeny and evolution of lepidopteran host ranges
and mummy characteristics. BMC Evolutionary Biology, 8, 329. [Featured Article].
CHAP / BOOK
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Creer S (2008) New technologies. In: Manual for the molecular barcoding of deep-sea nematodes. Eds. Lambshead
P.J.D. and Packer M. International Seabed Authority, United Nations.
OTHER (NON ISI)
[NBAF-S]
Dugdale HL (2008) Genetic analyses of badger populations. In: Macdonald DW & Burnham D. The State of Britain's
Mammals 2008. Mammals Trust UK, London.
Dugdale HL (2008) The private lives of badgers. Mammals UK. Summer 2008: 10–13.
Paterson, S (2008) Discovery of genes for roundworm disease. Natural Environment Research Council Annual
Review 2007-2008, NERC, August 2008, pp 14-15.
THESES
Andre J (2008) PhD Thesis (University of Reading – NBAF-E) Earthworm adaptations to metals: inorganic speciation,
biochemical fingerprinting and molecular genetics.
Angell R (2008) PhD Thesis (University of Leeds) Population structure and mating patterns in Daubenton's bat.
Biss PM (2008) PhD Thesis (Open University) Molecular ecology of Anthoxanthum odoratum in the Park Grass
Experiment.
Brownlow R (2008) PhD Thesis (University of Wales, Aberystwyth). Are benthic estuarine populations self-recruiting?
Eyre CA (2008) PhD Thesis (Cardiff University–NBAF-E) Interspecific interactions between saprotrophic
basidiomycetes: effect on volatile production and gene expression of mycelia.
Holt B (2008) PhD Thesis (University of East Anglia) Evolution and Ecology of a Species Complex: Investigating the
Origin and Maintenance of Colour Polymorphism in the Genus Hypoplectrus.
Küpper C (2008) PhD Thesis (University of Bath) Molecular ecology of the Kentish plover Charadrius alexandrinus.
*Lee JW (2008) PhD Thesis (University of Sheffield) Behaviour, genetics and social organisation of the vinousthroated parrotbill Paradoxornis webbianus.
Lord A (2008) PhD Thesis (Imperial College London) Environmental Components of Reproductive Success in the Blue
tit, Parus caeruleus.
Piyapong C (2008) PhD Thesis (University of Leeds) Factors underlying shoal composition in the Trinidian guppy
(Poecilia reticulata) the effects of predation and sex differences.
Sambles C. (2008) PhD Thesis (Cardiff University – NBAF-E) Endocrine disruption in aquatic invertebrates.
Sawle A (2008) PhD Thesis (University of Liverpool – NBAF-L) Transcriptomic expression profiles as indicators of
ecotoxicological effect in the zebrafish (Danio rerio) embryos.
Struebig M (2008) PhD Thesis (Queen Mary, University of London) Impacts of forest fragmentation on the genetic and
community structure of tropical bats.
*Woodward BK (2008) PhD Thesis (University of Sheffield) The effect of ecology, demography and migration on the
prevalence of cooperative breeding in the long-tailed tit.
11
[2007]
[NBAF-L]
Allen MJ, Martinez-Martinez J, Schroeder DC, Somerfield PJ and Wilson WH (2007) Use of microarrays to assess
viral diversity: from genotype to phenotype. Environmental Microbiology 9 971–982. [M]
Aveyard J; Mehrabi M, Cossins A (2007) One step visual detection of PCR products with gold nanoparticles and a
nucleic acid lateral flow (NALF) device. Chemical Communications 41 4251-4253. [T]
Davis F, Hughes MA, Cossins AR, Higson SPJ(2007) Single gene differentiation by DNA-modified carbon electrodes
using an AC impedimetric approach. Analytical Chemistry 79: 3 1153-1157. [T]
Gonzalez SF, Chatziandreou N, Nielsen ME, Li W, Rogers J, Taylor R, Santos Y, Cossins A.(2007) Cutaneous immune
responses in the common carp detected using transcript analysis. Molecular Immunology. 44 1664-79. [T]
Hayward SA, Murray PA, Gracey AY, Cossins AR (2007) Beyond the lipid hypothesis: mechanisms underlying
phenotypic plasticity in inducible cold tolerance. Advanced Experimental Medical Biology 594 132-42. [T]
Higgins SJ, Mouffouk F, Brown SJ, williams DR, Cossins AR (2007) An electrogenerated polyterthiophene for
binding and sensing polyadenosine-functionalised oligonucleotides. Sensors and Actuators B–Chemical 122:1 253258. [T]
Kalujnaia S, McWilliam IS, Zaguinaiko VA, Feilen AL, Nicholson J, Hazon N, Cutler CP, Balment RJ, Cossins AR,
Hughes M, Cramb G. (2007) Salinity adaptation and gene profiling analysis in the European eel (Anguilla anguilla)
using microarray technology. General Comparative Endocrinology 152 274-80. [M]
McLean L, Young IS, Doherty MK (2007) Global cooling: Cold acclimation and the expression of soluble proteins in
carp skeletal muscle. Proteomics 7:15 2667-2681. [T]
Murray P, Hayward SA, Govan GG, Gracey AY, Cossins AR (2007) An explicit test of the phospholipid saturation
hypothesis of acquired cold tolerance in Caenorhabditis elegans. Proceedings National Acadademy of Sciences of
the USA 27 5489-94. [T]
[NBAF-S]
Ahmed S, Dawson D, Compton SG, Gilmartin PM (2007) Characterization of microsatellite loci in the African fig
Ficus sycomorus L. (Moraceae). Molecular Ecology Notes 7 1175–1177. [T]
Anderson SJ, Gould P, Freeland JR (2007) Repetitive flanking sequences (ReFS): novel molecular markers from
microsatellite families. Molecular Ecology Notes, 7 374-376. [T]
Dawson DA, Åkesson M, Burke T, Pemberton JM, Slate J, Hansson B (2007) Gene order and recombination in
homologous regions of the chicken and a passerine bird. Molecular Biology and Evolution 24 1537-1552. [T]
Dugdale HL, Macdonald DW, Pope LC & Burke T. 2007. Polygynandry, extra-group paternity and multiple paternity
litters in European badger (Meles meles) social groups. Molecular Ecology 16(24) 5294–5306. [T]
Furmankiewicz J and Altringham JD (2007) Genetic structure in a swarming brown long-eared bat (Plecotus auritus)
population: evidence for mating at swarming sites. Conservation Genetics 8 913-923. [T]
*Griffith SC, Dawson DA, Jensen H, Ockendon N, Greig C, Neumann K, Burke T (2007) Fourteen polymorphic
microsatellite loci characterised in the house sparrow Passer domesticus (AVES: Passeridae). Molecular Ecology
Notes, 7, 333-336. [T]
*Gunn MR, Hartnup K, Boutin S, Slate J, Coltman DW (2007) A test of the efficacy of whole-genome amplification on
DNA obtained from low-yield samples. Molecular Ecology Notes, 7 393-399. [T]
Küpper C, Horsburgh GJ, Dawson DA, Székely T, French-Constant R, Burke T (2007) Characterisation of 36
polymorphic microsatellite loci in the Kentish plover (Charadrius alexandrinus) including two sex-linked loci and
their amplification in four other Charadrius species. Molecular Ecology Notes, 7, 35-39. [T]
Marshall RC, Buchanan KL., Catchpole CK (2007) Song and female choice for extra-pair copulations in the sedge
warbler Acrocephalus schoenobaenus. Animal Behaviour 73 629-635. [T]
*Meglécz E, Anderson SJ, Bourguet D, Butcher R, Caldas A, Cassel-Lundhagen A, Coeur d'Acier A, Dawson DA,
Faure N, Fauvelot C, Franck P, Harper G, Keyghobadi N, Kluetsch C, Muthulakshmi M, Nagaraju J, Patt A,
Petenian F, Silvain JF, Wilcock HR (2007) Microsatellite flanking region similarities among different loci within
insect species. Insect Molecular Biology, 16, 175-185. [T]
Phillips RA, Catry P, Silk JRD, Bearhop S, McGill R, Afanasyev V and Strange IJ (2007) Movements, winter distribution
and activity patterns of Falkland and brown skuas: insights from loggers and isotopes. Marine Ecology Progress Series
345, 281-291. [P]
Rossiter SJ, Benda P, Dietz C, Zhang S and Jones G (2007) Rangewide phylogeography in the greater horseshoe bat
inferred from microsatellites: implications for population history, taxonomy and conservation. Molecular Ecology 16,
4699–4714. [T]
Scheppers TLJ, Frantz AC, Schaul M, Engel E, Breyne P, Schley L, Roper TJ (2007) Estimating social group size of
Eurasian badgers by genotyping remotely plucked single hairs. Wildlife Biology, 13, 195-207.
Simeoni M, Dawson DA, Ross DJ, Châline N, Burke T, Hatchwell BJ (2007) Characterisation of 20 microsatellite loci
in the long-tailed tit Aegithalos caudatus (Aegithalidae, AVES). Molecular Ecology Notes, 7 1319-1322. [T]
12
Tingay RE, Dawson DA, Pandhal J, Clarke ML, David V, Culver M (2007) Isolation of 22 new Haliaeetus
microsatellite loci and their characterization in the critically endangered Madagascar fish-eagle (Haliaeetus
vociferoides) and three other Haliaeetus eagle species. Molecular Ecology Notes 7 711-715. [T]
[NBAF-E]
Belokobylskij SA, Zaldivar-Riveron A, Leon-Regagnon V & Quicke DLJ. (2007) A new genus of Lysitermini
(Hymenoptera: Braconidae: Lysiterinae) from Madagascar and its taxonomic placement based on 28S rDNA
sequence data. Zootaxa 1461 25-37. [T]
Cohen R, Chalifa-Caspi V, Williams TD, Auslander M, George SG, Chipman JK, Tom M (2007) Estimating the
efficiency of fish cross-species cDNA microarray hybridization (2007) Marine. Biotechnology 9 491-499. [M]
Frost AJ, Ashley PJ, Winrow-Giffen A & Sneddon LU (2007) Plasticity in animal personality traits: does prior
experience alter the degree of boldness? Proceedings Royal Society of London B 274 333-339. [T]
Herrera A, Cockell CS, Self S, Blaxter ML, Reitner J, Arp G, Drose W & Tindle AG (2007). Bacterial colonization and
weathering of terrestrial obsidian in Iceland. Geomicrobiology 25 25-37.
Jones M, Gantenbein B, Fet V & Blaxter M (2007) The effect of model choice on phylogenetic inference using
mitochondrial sequence data: Lessons from the scorpions. Molecular Phylogenetics and Evolution 43 583-595. [T]
Larsen PF Nielsen EE, Williams TD, Hemmer-Hansen J, Bekkevold D, Chipman K, Kruhøffer M, Grønkjær P, George
SG, Andersen LD, Loeschcke V (2007) Adaptive differences in gene expression in European flounder (Platichthys
flesus) Molecular Ecology 16 4674-4683. [M]
Neufeld JD, Schäfer H, Boden R, Murrell JC. (2007) Stable isotope probing of the marine environment implicates
Methylophaga and uncultured Gammaproteobacteria in the consumption of methanol and methylamine. ISME J. 1
480-491. [M]
Quicke DLJ, Laurenne NM, Fitton MG & Broad GR (2007) Towards a thousand sequence ichneumonid wasp
molecular phylogeny (Insecta: Hymenoptera: Ichneumonidae) based on the 28S rDNA D2-D3 region. Journal of
Insect Science 7 17-19. [T]
Williams TD, Diab AM, George SG, Sabine V, Chipman JK (2007) Gene expression responses of European flounder
(Platichthys flesus) to 17-b estradiol. Toxicology Letters. 168 236-248. [M]
Zaldivar-Riveron A, Belokobylskij SA, León-Regagnon V, Martinez JJ, Briceno R, Quicke DLJ (2007) A single origin
of gall association in a group of parasitic wasps with disperate morphologies. Molecular Phylogenetics and
Evolution 44 981-999. [T]
THESES
Azadi NA (2007) MSc Thesis (Lancaster University) Microarray analysis of the effect of industrial pollution on
stickleback fish using linear mixed effect models.
Bamford A (2007) PhD Thesis (University of Nottingham) Competition and co-existence among vultures: from
individual behaviour to conservation ecology.
Berg M (2007) PhD Thesis (University of Groningen) Sexual selection and reproductive strategies in songbirds :
territoriality, mate and parental care.
Bourke B (2007) PhD Thesis (University of Nottingham). Population genetics of the golden eagle (Aquila chrysaetos)
in the British Isles and its phylogeography in Europe.
*Coiffait L (2007) PhD Thesis (Newcastle University). Investigating the movements of migratory thrushes Turdus
merula and T. iliacus using intrinsic markers and morphology.
*Dawson DA (2007) PhD Thesis (University of Sheffield) Genomic analysis of passerine birds using conserved
microsatellite loci.
Dugdale H (2007) PhD Thesis (University of Oxford). The evolution of social behaviour: the effect of mating system
and social structure in the European badger Meles meles.
Geoghegan F (2007) PhD Thesis (The University of Birmingham – NBAF-E) Differential gene expression in the threespined stickleback, Gasterosteus aculeatus, following exposure to mixtures of compounds.
Li W (2007) PhD Thesis (University of Liverpool). An integrated suite of informatics tools and resources to support
post-genomics investigations.
Mainwaring MC (2007) PhD thesis (Lancaster University). Evolutionary causes and consequences of hatching
asynchrony in nestling birds.
Maunder R.J. (2007) PhD Thesis (CEH Lancaster, Lancaster Environment Centre - NBAF-L) The effects of endocrine
disrupting chemicals on reproductive performance of sticklebacks.
O´Connor E. (2007) PhD Thesis (University of Liverpool - NBAF-L) Population difference in response to hypoxia:
Behaviour and physiology of three-spined stickleback, Gasterosteus aculeatus.
Sambles C (2007) PhD Thesis (Cardiff University). The derivation of the molecular basis of endocrine disruption in
aquatic invertebrates.
13
[2006]
[NBAF-L]
Allen MJ, Wilson WH (2006) The coccolithovirus microarray: an array of uses. Briefings in Functional Genomics and
Proteomics 5 273-9
Chipman JK, George SG, Williams TD, Diab AM, Sabine V, Ortega F and Falciani F (2006) A high density flounder
(Platichthys flesus) cDNA microarray as a tool in the identification of expression changes in gene sets predictive of
exposure to pollutants. Toxicology Letters, 164 Supplement 1, S42 [not referred].
Cossins AR, Fraser EJ Gracey AY (2006) Post-genomic approaches to understanding the mechanisms of
environmentally-induced phenotypic plasticity. J. exp. Biol. 209 2328-2336.
Fraser J, Mello LV, Fang Y, Brass A, Gracey AY, Cossins AR (2006) Hypoxia-inducible myoglobin expression in nonmuscle tissues. Proc. Nat. Acad. Sci. USA 103 2977-2981.
Lewis NA, Williams TD, Chipman JK (2006) Functional analysis of a metal response element in the regulatory region
of flounder cytochrome P450 1A and implications for environmental monitoring of pollutants. Toxicol Sci 92 387393.
Morrison N, Wood AJ, Hancock D, Shah S, Hakes L, Gray T, Tiwari B, Kille P, Cossins A, Hegarty M, Allen MJ,
Wilson WH, Olive P, Last K, Kramer C, Bailhache T, Reeves J, Pallett D, Warne J, Nashar K, Parkinson H,
Sansone SA, Rocca-Serra P, Stevens R, Snape J, Brass A, Field D. (2006) Annotation of environmental OMICS
data: application to the transcriptomics domain. ‘OMICS 10 172-8.
Sheader DL, Williams TD, Lyons BP, Chipman JK (2006) Oxidative stress response of European flounder (Platichthys
flesus) to cadmium determined by a custom cDNA microarray. Mar Environ Res 62 33-44.
Williams TD, Diab AM, George SG, Godfrey RE, Sabine V, Conesa A, Minchin SD, Watts PC, Chipman JK (2006)
Development of the GENIPOL European flounder (Platichthys flesus) microarray and determination of temporal
transcriptional responses to cadmium at low dose. Environ Sci Technol 40 6479-6488.
Wilson R, Cossins AR, Spiller DG (2006) Encoded microcarriers for high-throughput multiplexed detection.
Angewandte Chemie-International Edition 45 6104-6117.
[NBAF-S]
Anderson SJ, Dawson DA, Freeland JR (2006) Isolation and characterisation of highly polymorphic microsatellite loci
for the garden tiger moth Arctia caja (Lepidoptera: Arctiidae). Molecular Ecology Notes, 6, 104-106.
Bearhop S, Phillips RA, McGill R, Cherel Y, Dawson DA, Croxall JP (2006) Stable isotopes indicate sex-specific and
long-term individuals foraging specialisation in diving seabirds. Marine Ecology Progress Series, 311, 157-164.
Bourke B, Dawson DA (2006) Fifteen microsatellite loci characterised in the golden eagle Aquila chrysaetos
(Accipitridae: Aves). Molecular Ecology Notes, 6, 1047-1050.
Chen SF, Rossiter SJ, Faulkes CJ, Jones G (2006) Population genetic structure and demographic history of the endemic
Formosan lesser horseshoe bat (Rhinolophus monoceros) Molecular Ecology, 15, 1643–1656.
*Dawson DA, Burke T, Hansson B, Pandhal J, Hale MC, Hinten GN, Slate J (2006) A predicted microsatellite map of
the passerine genome based on chicken-passerine sequence similarity. Molecular Ecology, 15, 1299-1320.
Frantz AC, Fack F, Muller CP, Roper TJ (2006) Faecal DNA typing as a tool for investigating territorial behaviour of
badgers (Meles meles). European Journal of Wildlife Research, 52, 138-141.
Frantz AC, Roper TJ (2006) Simulations to assess the performance of different rarefaction methods in estimating
population size using small datasets. Conservation Genetics, 7, 315-318.
Hamill RM, Noor MAF, Watson TE, Ritchie MG (2006) New microsatellite loci for the European bushcricket
Ephippiger ephippiger (Orthoptera: Tettigoniidae). Molecular Ecology Notes, 6, 340-342.
Johnson PCD, Webster LMI, Adam A, Buckland R, Dawson DA, Keller LF (2006) Abundant variation in
microsatellites of the parasitic nematode, Trichostrongylus tenuis and linkage to a tandem repeat. Molecular and
Biochemical Parasitology, 148, 210-218.
Leitner S, Marshall RC, Leisler B, Catchpole CK (2006) Male song quality, egg size and offspring sex in captive
canaries, Serinus canaria. Ethology, 112, 554-563.
Rivers NM, Butlin RK, Altringham JD (2006) Autumn swarming behaviour of Natterer's bats in the UK: Population
size, catchment area and dispersal. Biological Conservation, 127, 215-226.
Rossiter SJ, Faulkes CG, Ransome RD, Faulkes CG, Dawson DA, Jones G (2006) Long-term paternity skew and the
opportunity for selection in a mammal with reversed sexual size dimorphism. Molecular Ecology, 15, 3035-3043.
[NBAF-E]
Cutter AD, Wasmuth JD, Blaxter ML (2006) The evolution of biased codon and amino acid usage in nematode
14
genomes. Mol Biol Evol 23 2303-2315.
Dalmay T (2006) Short RNAs in environmental adaptation. Proc R Soc Lond B 273 1579-1585.
Dalmay T, Edwards DR (2006) MicroRNAs and the hallmarks of cancer. Oncogene 25 6170-6175.
Hegarty MJ, Barker GL, Wilson ID, Abbott RJ, Edwards KJ, Hiscock SJ (2006) Transcriptome shock after interspecific
hybridization in Senecio is ameliorated by genome duplication. Curr Biol 16 1652-1659.
Ho T, Pallett D, Rusholme R, Dalmay T, Wang H (2006) A simplified method for cloning of short interfering RNAs
from Brassica juncea infected with turnip mosaic potyvirus and turnip crinkle carmovirus. J Virol Methods 136
217-223.
Jones M. & Blaxter M (2006) TaxMan: A taxonomic database manager. BMC Bioinformatics 7 536-539. [T]
Rathjen T, Nicol C, McConkey G, Dalmay T (2006) Analysis of short RNAs in the malaria parasite and its red blood
cell host. FEBS Lett 580 5185-5188.
Zaldivar-Riveron A, Mori M, Quicke DL (2006) Systematics of the cyclostome subfamilies of braconid parasitic wasps
(Hymenoptera: Ichneumonoidea): a simultaneous molecular and morphological Bayesian approach. Mol Phylogenet
Evol 38 130-145.
THESES
Glover AM (2006) PhD Thesis (University of Leeds) The ecology and conservation of cave-roosting bats in the
Yorkshire Dales.
Goodship N (2006) PhD Thesis (University of Cardiff) Endocrine control of nestling begging behaviour in the pied
flycatcher, Ficedula hypoleuca.
Griffiths AM (2006) PhD Thesis (University of Exeter) The population structure of brown trout (Salmo salar) on
Dartmoor National Park.
Phillimore A (2006) PhD Thesis (Imperial College, University of London) The ecological basis of speciation and
divergence in birds.
Vernon C (2006) PhD Thesis (University of Liverpool) Transcriptomic assessment of gene responses to environmental
stress - genetic and comparative approaches.
[2005]
[NBAF-L]
Williams D R, Epperson LE, Li WZ, Hughes MA, Taylor R, Rogers J, Martin SL, Cossins AR, Gracey AY (2005)
Seasonally hibernating phenotype assessed through transcript screening. Physiological Genomics 24, 12-22.
[NBAF-S]
Bretman A & Tregenza T (2005) Measuring polyandry in the wild: a case study using promiscuous crickets. Molecular
Ecology, 14, 2169-2179.
*Carpenter PJ, Pope LC, Greig C, Dawson DA, Rogers LM, Erven K, Wilson GJ, Delahay RJ, Cheeseman CL, Burke T
(2005) Mating system of the Eurasian badger, Meles meles, in a high density population. Molecular Ecology, 14,
273-284.
Châline N, Martin SJ, Ratnieks FLW (2005) Absence of nepotism towards imprisoned young queens during swarming
in the honey bee. Behavioral Ecology, 16, 403-409.
Dawson DA, Chittock J, Jehle R, Whitlock A, Nogueira D, Pellat J, Birkhead T, Burke T (2005) Identification of 13
polymorphic loci in the zebra finch Taeniopygia guttata (Passeridae, Aves). Molecular Ecology Notes, 5, 298-301.
Dawson DA, Hunter FM, Pandhal J, Buckland R, Parham A, Jones IL, Bradshaw M, Jehle R, Burke T (2005)
Assessment of 17 new whiskered auklet (Aethia pygmaea) microsatellite loci in 42 seabirds identifies 5-15
polymorphic markers for each of nine Alcinae species. Molecular Ecology Notes, 5, 289-297.
*Gunn MR, Dawson DA, Leviston A, Hartnup K, Davis CS, Strobeck C, Slate J, Coltman DW (2005) Isolation of 18
polymorphic microsatellite loci from the North American red squirrel, Tamiascirus ludsonicus (Sciuridae, Rodentia)
and their cross-utility in other species. Molecular Ecology Notes, 5, 650-653.
Leech DI, Rowe LV, Hartley IR (2005) Experimental evidence for adjustment of parental investment in relation to
brood sex ratio in the blue tit. Animal Behaviour, 72,1301-1307.
Pegler, K.R., L. Evans, J.R. Stevens and R. Wall (2005) Morphological and molecular comparison of host-derived
populations of parasitic Psoroptes mites. Medical and Veterinary Entomology, 19, 392-403.
Reichard M., Bryja J.,Ondra Kova M., Davidova M., Kaniewska P. and Smith C. (2005) Sexual selection for male
dominance reduces opportunities for female mate choice in the European bitterling (Rhodeus sericeus) Molecular
Ecology, 14, 1533-1542.
15
Rivers NM, Butlin RK, Altringham JD (2005) Genetics population structure of Natterer's bats explained by mating at
swarming sites and philopatry. Molecular Ecology, 14, 4299-4312.
Rossiter SJ, Ransome RD, Faulkes CG, Le Comber SL & Jones G (2005) Mate-fidelity and intra-lineage polygyny in
greater horseshoe bats. Nature, 437, 408-411.
Senior P, Butlin RK, Altringham JD (2005) Sex and segregation in temperate bats. Proceedings of the Royal Society,
Series B, 272, 2467-2473.
*Wenseleers T, Badcock N, Erven K, Tofilski A, Nascimento FS, Hart AG, Burke T, Archer ME, Ratnieks FLW
(2005) A test of worker policing theory in an advanced eusocial wasp, Vespula rufa. Evolution, 59, 1306-1314.
Wilcock HR, Bruford MW, Hildrew AG, Nichols RA (2005) Recruitment, kin and the spatial genetic structure of a
caddisfly Plectrocnemia conspersa in a southern English stream. Freshwater Biology, 50, 1499–1514.
[NBAF-E]
Hegarty MJ, Jones JM, Wilson ID, Barker GL, Coghill JA, Sanchez-Baracaldo P, Liu G, Buggs RJ, Abbott RJ,
Edwards KJ, Hiscock SJ (2005) Development of anonymous cDNA microarrays to study changes to the Senecio
floral transcriptome during hybrid speciation. Molecular Ecology, 14, 2493-2510.
Jones M, Blaxter M (2005) Evolutionary biology: animal roots and shoots. Nature, 434, 1076-1077.
Papanicolaou A, Joron M, McMillan WO, Blaxter ML, Jiggins CD (2005) Genomic tools and cDNA derived markers
for butterflies. Molecular Ecology, 14, 2883-2897.
THESES
Anderson SJE (2005) PhD Thesis (Open University) Metapopulation genetics of the garden tiger moth (Arctia caja).
Barnett OE (2005) PhD Thesis (Open University) The role of environmental change in the maintenance of sexual
reproduction in a perennial grass species, Festuca rubra.
*Barr, I. (2005). PhD Thesis, University of Sheffield. Sexual selection in the blue tit (Parus caeruleus).
Green NM (2005) PhD Thesis (University of Leeds) Seasonal patterns in population structure and behaviour of the bat
Myotis nattereri.
Senior P (2005) PhD Thesis (University of Leeds) Spatial and sexual segregation in Daubenton's bat (Myotis
daubentonii) in Wharfedale.
Temple HJ (2005) PhD Thesis (University of Cambridge) Ecology, cooperative breeding and conservation of the whitebreasted thrasher Ramphocinclus brachyurus.
Tingay R (2005) Historical distribution, contemporary status and cooperative breeding in the Madagascar fish eagle
(Haliaeetus vociferoides): Implications for conservation PhD Thesis (University of Nottingham).
Webster L (2005) PhD Thesis (University of Glasgow) The effects of gene flow on local adaptation in a natural hostparasite system.
[2004] NBAF-S ONLY from this point on.
Bretman A, Wedell N, Tregenza T (2004) Molecular evidence of post-copulatory inbreeding avoidance in the field
cricket Gryllus bimaculatus. Proceedings of the Royal Society of London B, 271, 159-164.
Châline N, Ratnieks FLW, Raine NE, Badcock NS, Burke T (2004) Non-lethal sampling of honey bee, Apis mellifera,
DNA using wing tips. Apidologie, 35, 311-318.
Dawson DA, Rossiter SJ, Jones G, Faulkes CG (2004) Microsatellite loci for the greater horseshoe bat Rhinolophus
ferrumequinum (Rhinolophidae, Chiroptera) and their cross-utility in other 17 other bat species. Molecular Ecology
Notes, 4, 96-100.
Fletcher K & Hamer KC (2004) Offspring sex ratio in the common tern Sterna hirundo: a species with negligible sexual
size dimorphism. Ibis, 146, 454-360.
Frantz AC, Schaul M, Pope LC, Fack F, Schley L, Muller CP, Roper TJ (2004) Estimating population size by
genotyping remotely plucked hair: the Eurasian badger. Journal of Applied Ecology, 41, 985-995.
Hatchwell BJ, Russell AF, MacColl ADC, Ross DJ, Fowlie MK, McGowan A (2004) Helpers increase long-term but
not short-term productivity in cooperatively breeding long-tailed tits. Behavioral Ecology, 15, 1-10.
Hay JM, Evans PR, Ward RM, Hamer KC (2004) Poor nutritional condition as a consequence of high dominance status
in the coal tit, Parus ater. Ibis, 146, 103-107.
Kingston T, Rossiter S (2004) Harmonic-hopping in Wallacea's bats. Nature, 429, 654-657.
Madden JR, Endler JA, Jury F (2004) Morphological signals of sex and status in spotted bowerbirds. Emu, 104, 21-30.
Madden JR, Lowe TJ, Fuller HV, Coe RL, Dasmahapatra KK, Amos W, Jury F (2004) Neighbouring male spotted
bowerbirds are not related, but do maraud each other. Animal Behaviour, 68, 751-758.
16
Madden JR, Lowe TJ, Fuller HV, Dasmahapatra KK, Coe RL (2004) Local traditions of bower decoration by spotted
bowerbirds in a single population. Animal Behaviour, 68, 759-765.
Nichols RA, Freeman KLM (2004) Using molecular markers with high mutation rates to obtain estimates that
distinguish relative migration rate and population size: a demonstration using data from endemic Mauritian skinks.
Molecular Ecology, 13, 775-789.
THESES
Bretman A.J. (2004) PhD Thesis (University of Leeds) Sexual selection in the field cricket Gryllus bimaculatus.
Chaline N.G. (2004) PhD Thesis (University of Sheffield) Reproductive conflicts and nepotism in the honey bee.
Evans L.M. (2004) PhD Thesis (University of Exeter) Phylogenetic assessment of Psoroptes ovis; their epidemiology
and taxonomic identity explored.
Frantz A.C. (2004) PhD Thesis (University of Sussex) Non-invasive genetic typing in the study of badger (Meles meles)
ecology.
*Furmankiewicz J. (2004) PhD Thesis (University of Wroclaw, Poland. [in Polish] with time spent in Leeds)
Mating behaviour of brown long-eared bat Plecotus auritus (Linnaeus, 1758).
*Paszkiewicz R. (2004) PhD Thesis (Wroclaw University, Poland - with time spent at Sunderland University) Genetical
structure and population biology of the mouse-eared bat (Myotis myotis).
Pedro P.M. (2004) PhD Thesis (University of Leeds) Impact of habitat fragmentation on species of Sabethes
mosquitoes.
[2003]
*Berg PR, Dawson DA, Pandhal J, Kirdendall LR, Burke T (2003) Isolation of microsatellite loci from two inbreeding
bark beetle species (Coccotrypes). Molecular Ecology Notes, 3, 270-273.
*Carpenter PJ, Dawson DA, Greig C, Parham A, Cheeseman CL, Burke T (2003) Isolation of 39 polymorphic
microsatellite loci and the development of a fluorescent marker set for the Eurasian badger (Meles meles)
(Carnivora: Mustelidae). Molecular Ecology Notes, 3, 610-615.
Davies NB, Butchart SHM, Burke TA, Châline N, Stewart IR (2003) Reed warblers guard against cuckoos and
cuckoldry. Animal Behaviour, 65, 285-295.
Dawson DA, Bretman AJ, Tregenza T (2003) Microsatellite loci for the field cricket, Gryllus bimaculatus and their
cross-utility in other species of Orthoptera. Molecular Ecology Notes, 3, 191-195.
Dawson DA, Burland TM, Douglas A, LeComber SC, Bradshaw M (2003) Isolation of microsatellite loci in the
freshwater fish, the bitterling Rhodeus sericeus (Teleostei: Cyprinidae). Molecular Ecology Notes, 3, 199-202.
Evans LM, Dawson DA, Wall R, Burke T, Stevens J (2003) Isolation of Psoroptes scab mite microsatellite markers
(Acari: Psoroptidae). Molecular Ecology Notes, 3, 420-424.
Fletcher KL & Hamer KC (2003) Sexing terns using biometrics: the advantage of within-pair comparisons. Bird Study,
50, 78-83.
Frantz AC, Pope LC, Carpenter PJ, Roper TJ, Wilson GJ, Delahay RJ, Burke T (2003) Reliable microsatellite
genotyping of the Eurasian badger (Meles meles) using faecal DNA. Molecular Ecology, 12, 1649-1661.
Frentui F, Lange CL, Burke T, Owens IPF (2003) Isolation of microsatellite loci in the Capricorn silvereye, Zosterops
lateralis chlorocephalus (Aves: Zosteropidae). Molecular Ecology Notes, 3, 462-465.
*Jump AS, Woodward FI, Burke T (2003) Cirsium species show disparity in patterns of genetic variation at their rangeedge, despite similar patterns of reproduction and isolation. New Phytologist, 160, 359-370.
Madden JR (2003) Bower decorations are good predictors of mating success in the spotted bowerbird. Behavioural
Ecology and Sociobiology, 53, 269-277.
Madden JR (2003) Male spotted bowerbirds preferentially choose, arrange and proffer objects that are good predictors
of mating success. Behavioural Ecology and Sociobiology, 53, 263-268.
Marshall R, Buchanan KL, Catchpole CK (2003) Sexual selection and individual genetic diversity in a songbird.
Proceedings of the Royal Society of London, Series B (suppl.), S248-S250.
McGowan A, Woodburn RJW, Hatchwell BJ (2003) The effect of helping behaviour on the survival of juvenile and
adult long-tailed tits (Aegithalos caudatus). Journal of Animal Ecology, 72, 491-499.
*Wilhelm K, Dawson DA, Gentle LK, Horsfield GF, Schlötterer C, Greig C, East M, Hofer H, Tautz D, Burke T (2003)
Characterisation of spotted hyena, Crocuta crocuta microsatellite loci. Molecular Ecology Notes, 3, 360-362.
Wilson GJ, Frantz AC, Pope LC, Roper TJ, Burke TA, Cheeseman CL, Delahay RJ (2003) Estimation of badger
abundance using faecal DNA typing. Journal of Applied Ecology, 40, 658-666.
17
THESES
Ahmed S. (2003) PhD Thesis (University of Leeds) Pollen mediated gene flow in Ficus sycomorus L.
Douglas A. (2003) PhD Thesis (Queen Mary, University of London) Population ecology and behaviour of juvenile
bitterling (Rhodeus serecius, Pallas).
Freeman K. (2003) PhD Thesis (Queen Mary, University of London) The population genetics and conservation of a
Mauritian skink.
Hay J. (2003) PhD Thesis (University of Durham) Causes and consequences of variation in dominance status in the
Paridae.
Sharp S.P. (2003) PhD Thesis (University of Sheffield) Kin recognition in the cooperative breeding system of longtailed tits Aegithalos caudatus.
[2002]
Châline N, Ratnieks FLW, Burke T (2002) Anarchy in the UK: Detailed analysis of worker reproduction in a naturallyoccurring British anarchistic honeybee, Apis mellifera, colony using microsatellite markers. Molecular Ecology, 11,
1795-1803.
Dawson DA & Wilcock HR (2002) Isolation and characterisation of eight polymorphic microsatellite loci in the netspinning caddisfly, Polycentropus flavomaculatus (Polycentropodidae). Molecular Ecology Notes, 2, 514-517.
Hatchwell BJ, Ross DJ, Châline N, Fowlie MK, Burke T (2002) Parentage in the cooperative breeding system of longtailed tits, Aegithalos caudatus. Animal Behaviour, 64, 55-63.
*Jump AS, Dawson DA, James CM, Woodward FI, Burke T (2002) Isolation of polymorphic microsatellites in the
stemless thistle (Cirsium acaule) and their utility in other Cirsium species. Molecular Ecology Notes, 2, 589-592.
*Krupa AP, Jehle R, Dawson DA, Gentle LK, Gibbs M, Arntzen JW, Burke T (2002) Microsatellite loci in the crested
newt (Triturus cristatus) and their utility in other newt taxa. Conservation Genetics, 3, 87-89.
MacColl ADC & Hatchwell BJ (2002) Temporal variation in fitness pay-offs promotes cooperative breeding in longtailed tits Aegithalos caudatus. American Naturalist, 160, 186-194
Madden JR (2002) Bower decorations attract females but provoke other male spotted bowerbirds - bower owners
resolve this trade off. Proceedings of the Royal Society, Series B, 269, 1347-1351.
Phillips RA (2002) Trios of brown skuas at Bird Island, South Georgia: incidence and composition. Condor, 104, 694697.
Phillips RA, Dawson DA, Ross DJ (2002) Mating patterns and reversed size dimorphism in Southern skuas
(Stercorarius skua lonnbergi). Auk, 119, 858-863.
THESES
Carpenter P.J. (2002) PhD Thesis (University of Sheffield) A study of mating systems, inbreeding avoidance and TB
rsistance in the Eurasian badger (Meles meles) using microsatellite markers.
Fletcher K (2002) PhD Thesis (Durham University) Sex-specific breeding ecology of common terns in NE England.
Fok K.W. (2002) PhD Thesis (University of Nottingham)
Leech D. (2002) PhD Thesis (University of Lancaster)
Brood sex ratio, parentage and parental investment in the blue tit, Parus caeruleus.
MacGowan A. (2002) PhD Thesis (University of Sheffield) The fitness benefits of cooperative breeding in long-tailed
tits, Aegithalos caudatus.
[2001]
Cunningham EJA & Russell AF (2001) Maternal investment - Sex differences in avian yolk hormone levels - Reply.
Nature, 412, 498-499.
*Dawson DA, Darby S, Hunter FM, Krupa AP, Jones IL, Burke T (2001) A critique of CHD-based molecular sexing
protocols illustrated by a Z-chromosome polymorphism detected in auklets. Molecular Ecology Notes,1, 201-204.
Foster KR & Ratnieks FLW (2001) Convergent evolution of worker policing by egg eating in the honey bee and
common wasp. Proceedings of the Royal Society of London, Series B, 268, 169-174.
Hatchwell BJ, Anderson C, Ross DJ, Fowlie MK, Blackwell PG (2001) Social organisation of cooperatively breeding
long-tailed tits: kinship and spatial dynamics. Journal of Animal Ecology, 70, 820-830.
18
Hatchwell BJ, Ross DJ, Fowlie MK, McGowan A (2001) Kin discrimination in cooperatively breeding long-tailed tits.
Proceedings of the Royal Society, Series B, 268, 885-890.
Leech DI, Hartley IR, Stewart IRK, Griffith SC, Burke T (2001) No effect of parental quality or extrapair paternity on
brood sex ratio in the blue tit (Parus caeruleus). Behavioral Ecology, 12, 674-680.
Nicholls EH, Burke T, Birkhead TR (2001) Ejaculate allocation by male sand martins, Riparia riparia. Proceedings of
the Royal Society of London, Series B, 268, 1265-1270.
Russell AF & Hatchwell BJ (2001) Experimental evidence for kin-biased helping in a cooperatively breeding
vertebrate. Proceedings of the Royal Society, Series B, 268, 2169-2174.
THESES
Buchanan G. (2001) PhD Thesis (University of Sunderland) Mate choice in reed buntings (Emberiza schoeniclus).
Eaton M. (2001) PhD Thesis (University of Durham) Determinants of habitat and site use by turnstones and purple
sandpipers in N.E. England, and possible effects of the removal of coastal nutrients.
Madden J.R. (2001) PhD Thesis (University of Sheffield) Sex, costs and bowerbird tastes.
[2000]
Cunningham EJA & Russell AK (2000) Egg investment is influenced by male attractiveness in the mallard. Nature,
404, 74-77.
*Dawson DA, Hanotte O, Greig C, Stewart IRK, Burke T (2000) Polymorphic microsatellites in the blue tit Parus
caeruleus and their cross-species utility in 20 songbird families. Molecular Ecology, 9, 1941-1944.
Foster KR & Ratnieks FLW (2000) Facultative worker policing in a social wasp. Nature, 407, 692-693.
*Richardson DS, Jury FL, Dawson DA, Salgueiro P, Komdeur J, Burke T (2000) Fifty Seychelles warbler
(Acrocephalus sechellensis) microsatellite loci polymorphic in Sylviidae species and their cross-species
amplification in other passerine birds. Molecular Ecology, 9, 2226-2231.
THESES
Foster K. (2000) PhD Thesis (University of Sheffield) Kin selection and reproductive conflict in the vespine wasps.
Marshall R. (2000) PhD Thesis (University of London) Song, microsatellite DNA and paternity in the sedge warbler,
Acrocephalus schoenobaenus.
Nicholls H. (2000) PhD Thesis (University of Sheffield) Male adaptations to sperm competition in the sand martin,
Riparia riparia.
Wilson MW. (2000) PhD Thesis (University of Sheffield) Reproductive strategies and paternal care in the willow
warbler Phylloscopus trochilus.
[1999]
*Griffith SC, Stewart IRK, Dawson DA, Owens IPF, Burke T (1999) Contrasting levels of extra-pair paternity in
mainland and island populations of the house sparrow (Passer domesticus): is there an 'island effect'? Biological
Journal of the Linnean Society, 68, 303-316.
*McConnell SKJ, Dawson DA, Wardle A, Burke T (1999) The isolation and mapping of 19 tetranucleotide
microsatellite markers in the chicken. Animal Genetics, 30, 183-189.
*Morisson M, Plisson-Petit F, Dawson D, Pitel F, Gellin J, Burke T, Vignal A (1999) 33 novel characterised chicken
microsatellite loci : 20 new locations on reference maps. Animal Genetics, 30, 391-393.
*Wardle A, Dawson D, Gibbs M, Parham A, Burke T (1999) Further development of chicken microsatellite loci: 21
markers mapped. Animal Genetics, 30, 225-244.
THESIS
Marsden R. (1999) PhD Thesis (University of Sheffield) Coloniality in the sociable weaver Philetairus socius.
[1998]
*Dawson D, McConnell S, Wardle A, Gibbs M, Burke T (1998) Characterization and mapping of fifteen novel chicken
microsatellite loci. Animal Genetics, 29, 159-160.
19
*Martinez JG, Burke T, Dawson D, Soler JJ, Møller AP (1998) Microsatellite typing reveals mating patterns in the
brood parasitic great spotted cuckoo (Clamator glandarius). Molecular Ecology, 7, 289-298.
20