Supplementary Table 1 | Novel strategies for the treatment of patients with HER2-positive breast cancer* Strategies and examples Optimization of trastuzumab antibody IgE homolog of (IgG) trastuzumab Trastuzumab with modified oligosaccharides in Fc region (afucosylated) MDX-H210 (bispecific mAb targeting HER2 and FcγRI) 2B1 (bispecific mAb targeting HER2 and FcγRIII) C6.5xscFv (bispecific mAb without an Fc domain, targeting HER2 and FcγRIII [CD16]) Conjugation of HER2-targeted agents with toxins ScFv(FRP5)–ETA (single-chain antibody fragment targeting HER2 and fused to truncated Pseudomonas exotoxin) GrB–scFv(FRP5) (single-chain antibody targeting HER2 and fused to granzyme B, an apoptosis-inducing serine protease) Affitoxin (HER2-specific affibody molecule [smaller than most antibody fragments] fused to truncated Pseudomonas exotoxin) Pegylated immunoliposomes bearing trastuzumab and containing melittin Single-chain antibody targeting HER2 and fused to recombinant gelonin Ec-LDP–Hr-AE (bispecific fusion protein targeting HER1 and HER2, conjugated to lidamycin) Trastuzumab conjugated to nanoparticles (loaded with paclitaxel, doxorubicin, or cisplatin Targeting HER1 Cetuximab (HER1-targeted mAb) Panitumumab (HER1-target mAb) Targeting HER3 AMG-888 (HER3-targeted mAb) Targeting HER2 Arry 380 (potent, reversible HER2 TKI) Broad-spectrum TKIs JNJ-2887 1063 (HER1/HER2/HER4 TKI) Inhibition of PI3K (class I) GDC-0941 (pan-PI3K inhibitor [all class I isoforms]) BKM120 (pan-PI3K inhibitor [all class I isoforms]) PX-866 (pan-PI3K inhibitor [all class I isoforms]) Stage of development Reference or ClinicalTrials.gov identifier Preclinical Preclinical Karagiannis et al. (2009)1 Mori et al. (2007),2 Suzuki et al. (2007)3 Repp et al. (2003)4 Weiner et al. (1995)5 McCall et al. (1999),6 McCall et al. (2001)7 Phase I (NAD) Phase I (terminated) Preclinical (NAD) Phase I (NAD) Azemar et al. (2003),8 von Minckwitz et al. (2005)9 Preclinical Dalken et al. (2006)10 Preclinical Zielinski et al. (2009)11 Preclinical Barrajón-Catalán et al. (2010)12 Preclinical Cao et al. (2009)13 Preclinical Guo et al. (2010)14 Preclinical Dilnawaz et al. (2010),15 Colombo et al. (2010)16 Phase I in HER2+ BC Phase I NCT00367250 NCT00894504 Phase I NCT00730470 Phase I Lee et al. (2009),17 NCT00650572 Preclinical Emanuel et al. (2008)18 Phase I Raynaud et al. (2009),19 Wagner et al. (2009),20 NCT00928330, NCT00960960 NCT01068483 Jimeno et al. (2009),21 NCT00726583 Phase I Phase I Dual PI3K–mTOR inhibition SF1126 (vascular targeted pan-PI3K inhibitor [all class I isoforms] and inhibitor of mTORC1/2, DNA-PK, PLK-1, CK2, ATM and PIM-1) XL765 (PI3K–mTOR inhibitor) PF-04691,502 (PI3K–mTOR inhibitor) BEZ235 (reversible inhibitor of PI3K–mTOR) Inhibition of Akt MEKK-2206 (allosteric Akt1/2 inhibitor) Phase I Chiorean et al. (2009),22 NCT00907205 Phase I LoRusso et al. (2009)23 NCT00485719, NCT00777699 NCT00927823 NCT00620594 Phase I Phase I Phase I Tolcher et al. (2009),24 NCT00963547 Inhibition of mTOR Temsirolimus Phase II (NAD for BC) Ridaforolimus Phase II (NAD for BC) Chan et al. (2005),25 Chow et al. (2006),26 NCT00699491 Sessa et al. (2009),27 Hartford et al. (2009),28 Mita et al. (2008),29 Rizzieri et al. (2008),30 Di Cosimo et al. (2010)31 Inhibition of IGF-1R pathway BIIB022 (mAb targeting IGF-1R) Phase I 1 NCT00555724 RO1507 (IGF-1R inhibitor) AXL1717 (IGF-1R inhibitor) XL228 (multitarget protein-kinase inhibitor) Inhibition of HSP90 Tanespimycin Phase I Phase I Phase I NCT00811993 (12 agents) NCT01062620 NCT00526838 Phase II (NAD for BC) SNX-5,422 STA-9,090 AT13387 Vaccines and immunotherapy Chimeric HER2 peptide epitopes fused to T-cell epitope HER2-derived p369-377 peptide incorporated into polylactide-co-glycolide microspheres MUC1 and HER2 combined peptide vaccines 9 peptides from HER2 CEA and CTA and a class II MHC-restricted tetanus helper peptide MVA-BN-HER2 (vaccinia viral vector encoding modified HER2) V930 (plasmid-based DNA vaccine) pNGVL3-hICD (plasmid-based DNA vaccine encoding intracellular HER2 domain) Adenovector vaccine expressing rat HER2 MVF-HER-2(628-647)-CRL 1005 (chimeric peptide consisting of a mutated HER2 B-cell epitope and a promiscuous T-cell epitope from the measles virus fusion protein, coated with poloxamer CRL-1005 to form microparticles) CHP-HER2 (cholesterol-bearing hydrophobized pullulan HER2 protein vaccine) Co-stimulatory gene (CD80)-modified, HLA-A2-matched, allogeneic, breast-cancer cell line Lapuleucel-T (autologous peripheral blood mononuclear cells cultured ex vivo with a recombinant fusion protein derived from HER2) Ex vivo expansion and adoptive transfer of HER2specific T cells Multitarget kinase and angiogenesis inhibitors Sorafenib (inhibitor of VEGFR, PDGFR, RET, FLT3, and c-KIT) Axitinib (selective inhibitor of VEGFRTK1, VEGFRTK2 and VEGFRTK3) Vandetanib (dual inhibitor of VEGFR and HER1 RTK) Phase I Phase I Phase I Erlichman et al. (2009),32 Modi et al. (2008),33 Modi et al. (2006)34 NCT00506805 NCT01193364 NCT01246102 Phase I Phase I Kaumaya et al. (2009)35 NCT00005023 Phase I Phase I NCT00640861 NCT00892567 Phase I NCT00485277 Phase I Phase I NCT00250419 NCT00436254 Phase I Phase I NCT00307229 NCT00017537 Phase I Aoki et al. (2009),36 Kageyama et al. (2008),37 NCT00291473 Dols et al. (2003),38 Dols et al. (2003)39 Peethambaram et al. (2009)40 Phase I Phase I Phase I Bernhard et al. (2008),41 NCT00228358 NAD for HER2+ BC Bianchi et al. (2003),42 MorenoAspitia et al. (2009)43 Kelly et al. (2010)44 Phase I–II (NAD for HER2+ BC Phase I–II (NAD for Morabito et al. (2009)45 HER2+ BC BMS-690,514 (oral, pan-HER and VEGFR2 inhibitor) Phase I-II NCT01068704 *At the preclinical stage, in phase I clinical trials, or NAD for the treatment of patients with BC. Abbreviations: BC, breast cancer; CEA, carcinoembryonic antigen; CTA, cancer-testis antigen; FLT3, Fms-like tyrosine kinase 3; HLA-A2, human leukocyte antigen A2; HSP90, heat-shock protein 90; IGF-1R, insulin-like growth factor-1 receptor; mAb, monoclonal antibody; mTOR, mammalian target of rapamycin; NAD, not in active development; PI3K, phosphatidylinositol-3-kinase; PDGFR, platelet-derived growth factor receptor; VEGFR, VEGF receptor; VEGFRTK, VEGFR tyrosine kinase; TKI, tyrosine kinase inhibitor. 1. Karagiannis, P. et al. Characterisation of an engineered trastuzumab IgE antibody and effector cell mechanisms targeting HER2/neu-positive tumour cells. Cancer Immunol. Immunother. 58, 915–930 (2009). 2 Mori, K. et al. Non-fucosylated therapeutic antibodies: the next generation of therapeutic antibodies. Cytotechnology 55, 109–114 (2007). 3. Suzuki, E. et al. A nonfucosylated anti-HER2 antibody augments antibody-dependent cellular cytotoxicity in breast cancer patients. Clin. Cancer Res. 13, 1875–1882 (2007). 4 Repp R. et al. Phase I clinical trial of the bispecific antibody MDX-H210 (anti-FcgammaRI x anti-HER-2/neu) in combination with Filgrastim (G.-CSF) for treatment of advanced breast cancer. Br. J. Cancer 89, 2234–2243 (2003). 5. Weiner, L. M. et al. Phase I trial of 2B1, a bispecific monoclonal antibody targeting c-erbB-2 and Fc gamma RIII. Cancer Res. 55, 4586–4593 (1995). 6. McCall, A. M. et al. Isolation and characterization of an anti-CD16 single-chain Fv fragment and construction of an anti-HER2/neu/anti-CD16 bispecific scFv that triggers CD16-dependent tumor cytolysis. Mol. Immunol. 36, 433–445 (1999). 7. McCall, A. M. et al. Increasing the affinity for tumor antigen enhances bispecific antibody cytotoxicity. J. 2 Immunol. 166, 6112–6117 (2001). 8. Azemar, M. et al. Regression of cutaneous tumor lesions in patients intratumorally injected with a recombinant single-chain antibody-toxin targeted to ErbB2/HER2. Breast Cancer Res. Treat. 82, 155–164 (2003). 9. von Minckwitz, G. et al. Phase I clinical study of the recombinant antibody toxin scFv(FRP5)-ETA specific for the ErbB2/HER2 receptor in patients with advanced solid malignomas. Breast Cancer Res. 7, R617–R626 (2005). 10. Dalken, B., Giesubel, U., Knauer, S. K. & Wels, W. S. Targeted induction of apoptosis by chimeric granzyme B fusion proteins carrying antibody and growth factor domains for cell recognition. Cell Death Differ. 13, 576–585 (2006). 11. Zielinski, R. et al. Affitoxin--a novel recombinant, HER2-specific, anticancer agent for targeted therapy of HER2-positive tumors. J. Immunother. 32, 817–825 (2009). 12. Barrajón-Catalán, E. et al. Selective death of human breast cancer cells by lytic immunoliposomes: Correlation with their HER2 expression level. Cancer Lett. 290, 192–203 (2010). 13. Cao, Y. et al. Construction and characterization of novel, recombinant immunotoxins targeting the Her2/neu oncogene product: in vitro and in vivo studies. Cancer Res. 69, 8987–8995 (2009). 14. Guo, X. F., Zhu, X. F., Shang, Y., Zhang, S. H. & Zhen, Y. S. A bispecific enediyne-energized fusion protein containing ligand-based and antibody-based oligopeptides against epidermal growth factor receptor and human epidermal growth factor receptor 2 shows potent antitumor activity. Clin. Cancer Res. 16, 2085–2094 (2010). 15. Dilnawaz, F., Singh, A., Mohanty, C. & Sahoo, S. K. Dual drug loaded superparamagnetic iron oxide nanoparticles for targeted cancer therapy. Biomaterials 31, 3694–3706 (2010). 16. Colombo, M. et al. HER2 targeting as a two-sided strategy for breast cancer diagnosis and treatment: Outlook and recent implications in nanomedical approaches. Pharmacol. Res. 62, 150–165 (2010). 17. Lee, P. et al. In vivo activity of ARRY-380, a potent, small molecule inhibitor of ErbB2 in combination with trastuzumab, docetaxel or bevacizumab [abstract]. Cancer Res. 69 (Suppl. 3), a5104 (2009). 18. Emanuel, S. L. et al. Cellular and in vivo activity of JNJ-28871063, a nonquinazoline pan-ErbB kinase inhibitor that crosses the blood-brain barrier and displays efficacy against intracranial tumors. Mol. Pharmacol. 73, 338– 348 (2008). 19. Raynaud, F. I. et al. Biological properties of potent inhibitors of class I phosphatidylinositide 3-kinases: from PI-103 through PI-540, PI-620 to the oral agent GDC-0941. Mol. Cancer Ther. 8, 1725–1738 (2009). 20. Wagner, A. J. et al. A first-in-human phase I study to evaluate the pan-PI3K inhibitor GDC-0941 administered QD or BID in patients with advanced solid tumors [abstract]. J. Clin. Oncol. 27 (Suppl. 15), a3501 (2009). 21. Jimeno, A. et al. Phase I trial of PX-866, a novel phosphoinositide-3-kinase (PI-3K) inhibitor [abstract]. J. Clin. Oncol. 27 (Suppl. 15), 3542 (2009). 22. Chiorean E G. et al. Phase I evaluation of SF1126, a vascular targeted PI3K inhibitor, administered twice weekly IV in patients with refractory solid tumors [abstract]. J. Clin. Oncol. 27 (Suppl. 15), a2558 (2009). 23. LoRusso, P. et al.: A phase I dose-escalation study of the safety, pharmacokinetics (PK), and pharmacodynamics of XL765, a PI3K/TORC1/TORC2 inhibitor administered orally to patients (pts) with advanced solid tumors [abstract]. J. Clin. Oncol. 27 (Suppl. 15), a3502 (2009). 24. Tolcher, A. W., Yap, T. A., Fearen, I. et al.: A phase I study of MK-2206, an oral potent allosteric Akt inhibitor (Akti), in patients (pts) with advanced solid tumor (ST) [abstract]. J. Clin. Oncol. 27 (Suppl. 15), a3503 (2009). 25. Chan, S. et al. Phase II study of temsirolimus (CCI-779), a novel inhibitor of mTOR, in heavily pretreated patients with locally advanced or metastatic breast cancer. J. Clin. Oncol. 23, 5314–5322 (2005). 26. Chow, L. W. C. et al. Phase III study of temsirolimus with letrozole or letrozole alone in postmenopausal women with locally advanced or metastatic breast cancer [abstract]. Breast Cancer Res. Treat. 100 (Suppl. 1), S286 (2006). 27. Sessa, C. et al. Phase Ib study of weekly mammalian target of rapamycin inhibitor ridaforolimus (AP23573; MK-8669) with weekly paclitaxel. Ann. Oncol. 21, 1315–1322 (2009). 28. Hartford, C. M. et al. A phase I trial to determine the safety, tolerability, and maximum tolerated dose of deforolimus in patients with advanced malignancies. Clin. Cancer Res. 15, 1428–1434 (2009). 29. Mita, M. M. et al. Phase I trial of the novel mammalian target of rapamycin inhibitor deforolimus (AP23573; MK-8669) administered intravenously daily for 5 days every 2 weeks to patients with advanced malignancies. J. Clin. Oncol. 26, 361–367 (2008). 30. Rizzieri, D. A. et al. A phase II clinical trial of deforolimus (AP23573, MK-8669), a novel mammalian target of rapamycin inhibitor, in patients with relapsed or refractory hematologic malignancies. Clin. Cancer Res. 14, 2756–2762 (2008). 31. Di Cosimo, S. et al. A phase I study of the oral mTOR inhibitor ridaforolimus (RIDA) in combination with the IGF-1R antibody dalotozumab (DALO) in patients (pts) with advanced solid tumors [abstract]. J. Clin. Oncol. 28 (Suppl. 15), a3008 (2010). 32. Erlichman, C. Tanespimycin: the opportunities and challenges of targeting heat shock protein 90. Expert Opin. Investig. Drugs 18, 861–868 (2009). 33. Modi, S. et al. Phase II trial of the Hsp90 inhibitor tanespimycin (Tan) + trastuzumab (T) in patients (pts) with HER2-positive metastatic breast cancer (MBC) [abstract]. J. Clin. Oncol. 26 (Suppl. 15), 1027 (2008). 34. Modi, S. et al. Phase I trial of KOS-953, a heat shock protein 90 inhibitor, and trastuzumab (T) [abstract]. J. Clin. Oncol. 24 (Suppl. 18), a501 (2006). 35. Kaumaya, P. T. et al. Phase I active immunotherapy with combination of two chimeric, human epidermal growth factor receptor 2, B-cell epitopes fused to a promiscuous T-cell epitope in patients with metastatic and/or recurrent solid tumors. J. Clin. Oncol. 27, 5270–5277 (2009). 36. Aoki, M. et al. Antibody responses against NY-ESO-1 and HER2 antigens in patients vaccinated with combinations of cholesteryl pullulan (CHP)-NY-ESO-1 and CHP-HER2 with OK-432. Vaccine 27, 6854–6861 3 (2009). 37. Kageyama, S. et al. Humoral immune responses in patients vaccinated with 1–146 HER2 protein complexed with cholesteryl pullulan nanogel. Cancer Sci. 99, 601–607 (2008). 38. Dols, A. et al. Vaccination of women with metastatic breast cancer, using a costimulatory gene (CD80)modified, HLA-A2-matched, allogeneic, breast cancer cell line: clinical and immunological results. Hum. Gene Ther. 14, 1117–1123 (2003). 39. Dols, A. et al. Identification of tumor-specific antibodies in patients with breast cancer vaccinated with genemodified allogeneic tumor cells. J. Immunother. 26, 163–170 (2003). 40. Peethambaram, P. P. et al. A phase I trial of immunotherapy with lapuleucel-T (APC8024) in patients with refractory metastatic tumors that express HER-2/neu. Clin. Cancer Res. 15, 5937–5944 (2009). 41. Bernhard, H. et al. Adoptive transfer of autologous, HER2-specific, cytotoxic T lymphocytes for the treatment of HER2-overexpressing breast cancer. Cancer Immunol. Immunother. 57, 271–280 (2008). 42. Bianchi, G. et al. Pilot trial of trastuzumab starting with or after the doxorubicin component of a doxorubicin plus paclitaxel regimen for women with HER2-positive advanced breast cancer. Clin. Cancer Res. 9, 5944–5951 (2003). 43. Moreno-Aspitia, A. et al. Phase II trial of sorafenib in patients with metastatic breast cancer previously exposed to anthracyclines or taxanes: North Central Cancer Treatment Group and Mayo Clinic Trial N0336. J. Clin. Oncol. 27, 11–15 (2009). 44. Kelly, R. J. & Rixe, O. Axitinib (AG-013736). Recent Results Cancer Res. 184, 33–44 (2010). 45. Morabito, A. et al. Vandetanib (ZD6474), a dual inhibitor of vascular endothelial growth factor receptor (VEGFR) and epidermal growth factor receptor (EGFR) tyrosine kinases: current status and future directions. Oncologist 14, 378–390 (2009). 4