Chen et al, hepatocyte-specific Gclc deletion, Supplementary Materials Targeting construct and targeting procedure for the generation of Gclc floxed mice-The key features of the targeting construct are shown in supplemental Fig. 1a. Complete details for the generation of this construct may be obtained by emailing tim.dalton@uc.edu. Briefly summarized, a neomycin resistance gene (neoR) flanked by loxP sites was cloned into the Sac I site in intron 3 of the Gclc gene, and an additional loxP site was cloned into the Bgl II site in intron 6, which is proximal to the exon 6 splice-donor site. The construct also contained the herpes simplex virus thymidine kinase (HSV-TK) mini-cassette for negative selection against random integration. The targeting construct was electroporated into embryonic stem (ES) cells derived from 129S6/SvJ mice. ES clones, resistant to both geneticin (G418) and gancyclovir, were selected and expanded. Targeted ES cells were identified by Southern blot analysis (see below). The correctly targeted ES cell clones were microinjected into C57BL/6J blastocysts and transferred into pseudo-pregnant mothers. The resulting chimeric male mice were bred to female C57BL/6J mice, and germ line transmission was identified by both Southern blot and PCR analysis. For abbreviations, the three different Gclc alleles (sup Fig.1a) are denoted as: “+” for the wild-type allele; “f” for the floxed conditional Gclc allele; and “h” for the hepatocyte-specific Gclc deleted allele after Cre-mediated recombination. Southern blot and PCR analysis-For differentiation of the Gclc(f) versus Gclc(+) allele, genomic DNA isolated from ES cells or mouse tissues was digested overnight with Sph I and processed for Southern blot analysis using the Sph I-Bam HI probe, depicted in supplementary Fig. 1a. For differentiation of the Gclc(f) versus Gclc(h) allele, genomic DNA was digested with Sac I, blotted, and hybridized with a probe encompassing 200 bp 5’ of the intron 6 Sac 1 site, as depicted in supplementary Fig. 1a. The band intensity was quantified using a Storm 860 Phosphorimager (Molecular Dynamics; Sunnyvale, CA) and ImageQuant 5.0 software. Genotyping was also confirmed by PCR analysis. The Gclc(f) allele was detected using primers A 1 Chen et al, hepatocyte-specific Gclc deletion, Supplementary Materials (GGGTGTTGGGTCGTTTGT) within the NEO gene, and B (CTATAATGTCCTGCACTGGG) within intron 3. The Gclc(h) allele was detected using primers C (TAGTGAACGGTGTTAAAGG) within intron 3, and D (TCACTGGATTCTCTCACC) within intron 6. The Gclc(+) allele was detected using primers B and C. Primers (GCGGTCTGGCAGTAAAAACTATC) and (GTGAAACAGCATTGCTGTCACTT) were used to detect the Cre transgene. Characterization of Gclc(f/f) mice-Gclc(f/+) mice were intercrossed to generate homozygous Gclc(f/f) mice, and the offspring were genotyped by Southern blot (sup Fig. 1b) and PCR analysis. The birth of mice of each possible genotype [Gclc(+/+), Gclc(+/f), Gclc(f/f)] was at expected Mendelian frequencies (data not shown). Gclc(f/f) are without phenotype and did not differ noticeably from wild-type Gclc(+/+) mice. This is because the Gclc(f) allele, despite carrying foreign sequences in introns 3 and 6, is expressed like the Gclc(+) allele. For example, in liver, no significant difference in the accumulation of GCLC or GSH was noted (sup Figs. 1c and 1d). Furthermore, GSH levels from several tissues and plasma did not differ between Gclc(+/+) and Gclc(f/f) mice (sup Fig. 1d). Previous studies using haploinsufficient Gclc(+/-) mice lowered GSH levels, demonstrating that GSH levels are sensitive to changes in Gclc copy number. Comparisons between Gclc(+/+) and Gclc(f/f) mice––including several tissues assayed between age 0 and 6 mo showed no difference in GCLC protein accumulation (sup Fig. 1c, showing liver only), activity (not shown), or GSH levels (sup Fig. 1d). Taken together, we conclude that the Gclc(f) allele is functionally indistinguishable from the Gclc(+) wild-type allele. 2 Chen et al, hepatocyte-specific Gclc deletion, Supplementary Materials Supplemental Fig. 1. Generation of Gclc floxed mice. (a) Schematic of the wild-type Gclc allele (+), targeting-construct targeted allele (f), and the deleted allele (h), following Cre-mediated recombination. NEO, neomycin-resistance mini-cassette, and HSV-TK, herpes simplex virus thymidine kinase mini-cassette, represent genes used as selectable markers. The positions of primers for PCR analysis are shown as arrows. (b) Southern blot analysis. Genomic DNA from mouse spleen was digested with Sph I and hybridized with the probe A shown in (a). The 7.5-kb and 3.0-kb bands represent the Gclc(+) and Gclc(f) alleles, respectively. (c) Western blot analysis of GCLC in livers from Gclc(+/+), Gclc(+/f), and Gclc(f/f) mice. (d) Tissue and plasma GSH levels in Gclc(+/+) wild-type and Gclc(f/f) floxed mice. Measurements reflect the means ± S.E. of samples from 3 or 4 mice. 3 Chen et al, hepatocyte-specific Gclc deletion, Supplementary Materials Tissue preparation for histopathological examination-For hematoxylin and eosin (H&E) staining and immunohistochemical studies, mouse livers were fixed in 4% paraformaldehyde, dehydrated in graded ethanol solutions, and embedded in paraffin. Sections (5 m thick) were rendered free of paraffin by immersing in xylene, rehydrated and stained with H&E or subjected to immunohistochemistry. For toluidine blue staining and electron microscopy, mouse livers were fixed in an iso-osmolar paraformaldehyde/glutaldehyde-phosphate-buffered solution, post-fixed in 1% phosphate-buffered osmium tetroxide, dehydrated in graded ethanol solutions ranging from 30-100%, treated with propylene oxide, and embedded in Spurr’s resin. Sections (1 m thick) were stained with toluidine blue for light microscopy. Thin sections for electron microscopy were placed on naked copper grids and stained with uranyl acetate and lead citrate. 4