format-version: 1.0
date: 08:11:2006 15:14
saved-by: Melissa Haendel
auto-generated-by: OBO-Edit 1.100-beta10
default-namespace: default_namespace
[Term]
id: CARO:0000000
name: anatomical entity
def: "Biological entity, which constitutes the structural organization of
a biological organism, or is an attribute of that organization."
[CARO:MAH]
[Term]
id: CARO:0000001
name: germ layer
def: "Gross division of embryo consisting of contiguous tissue specified
early in embryogenesis (typically during or just prior to gastrulation).
Each contibutes to a large but limited subset of mature anatomical
structures." [CARO:DOS]
is_a: CARO:0000043 ! portion of tissue
[Term]
id: CARO:0000002
name: reproductive system
is_obsolete: true
[Term]
id: CARO:0000003
name: anatomical structure
def: "Material anatomical entity which has inherent 3D shape and is
generated by coordinated expression of the organism's own genome."
[CARO:MAH]
is_a: CARO:0000006 ! material anatomical entity
[Term]
id: CARO:0000004
name: portion of organism substance
def: "Material anatomical entity in a gaseous, liquid, semisolid or solid
state, with or without the admixture of cells and biological
macromolecules; produced by anatomical structures or derived from inhaled
and ingested substances that have been modified by anatomical structures
as they pass through the body." [CARO:MAH]
is_a: CARO:0000006 ! material anatomical entity
[Term]
id: CARO:0000005
name: anatomical space
def: "Non-material anatomical entity of three dimensions, which is
generated by morphogenetic or other physiologic processes; is surrounded
by one or more anatomical structures; contains one or more organism
substances or anatomical structures." [CARO:MAH]
is_a: CARO:0000007 ! immaterial anatomical entity
[Term]
id: CARO:0000006
name: material anatomical entity
def: "Anatomical entity which has mass." [CARO:MAH]
is_a: CARO:0000000 ! anatomical entity
[Term]
id: CARO:0000007
name: immaterial anatomical entity
def: "Physical anatomical entity which is a three-dimensional space,
surface, line or point associated with a material physical anatomical
entity." [CARO:MAH]
is_a: CARO:0000000 ! anatomical entity
[Term]
id: CARO:0000008
name: anatomical line
def: "Non-material anatomical entity of one dimension, which forms a
boundary of an anatomical surface or is a modulation of an anatomical
surface." [CARO:MAH]
is_a: CARO:0000007 ! immaterial anatomical entity
[Term]
id: CARO:0000009
name: anatomical point
def: "Non-material anatomical entity of zero dimension, which forms a
boundary of an anatomical line or surface." [CARO:MAH]
is_a: CARO:0000007 ! immaterial anatomical entity
[Term]
id: CARO:0000010
name: anatomical surface
def: "Non-material anatomical entity of two dimensions, that is
demarcated by anatomical lines or points on the external or internal
surfaces of anatomical structures." [CARO:MAH]
is_a: CARO:0000007 ! immaterial anatomical entity
[Term]
id: CARO:0000011
name: organ system
def: "Anatomical structure, which has as its direct parts instances of
one or more organ types which are interconnected with one another by
zones of continuity." [CARO:MAH]
is_a: CARO:0000003 ! anatomical structure
[Term]
id: CARO:0000012
name: organism
def: "Anatomical structure which is the maximal aggregate manifestation
of an individual member of the species." [CARO:MAH]
is_a: CARO:0000003 ! anatomical structure
[Term]
id: CARO:0000013
name: cell
def: "Anatomical structure which has as its direct parts a maximally
connected cell compartment surrounded by a plasma membrane." [CARO:MAH]
is_a: CARO:0000003 ! anatomical structure
[Term]
id: CARO:0000014
name: cell component
def: "Anatomical structure which is a direct part of the cell."
[CARO:MAH]
is_a: CARO:0000003 ! anatomical structure
relationship: part_of CARO:0000013 ! cell
[Term]
id: CARO:0000015
name: mesoderm
def: "Gross division of embryo consisting of contiguous tissue specified
early in embryogenesis (typically during or just prior to gastrulation),
which gives rise to the a limited set of mature adult structures,
primarily muscle and connective tissue, blood and the vascular system."
[CARO:DOS]
is_a: CARO:0000001 ! germ layer
[Term]
id: CARO:0000016
name: excretory system
is_obsolete: true
[Term]
id: CARO:0000017
name: digestive system
is_obsolete: true
[Term]
id: CARO:0000018
name: nervous system
is_obsolete: true
[Term]
id: CARO:0000019
name: circulatory system
is_obsolete: true
[Term]
id: CARO:0000020
name: sensory system
is_obsolete: true
[Term]
id: CARO:0000021
name: body defense system
is_obsolete: true
[Term]
id: CARO:0000022
name: immune system
is_obsolete: true
[Term]
id: CARO:0000023
name: ectoderm
def: "Gross division of embryo consisting of contiguous tissue specified
early in embryogenesis (typically during or just prior to gastrulation),
which gives rise to a limted set of mature structures, primarily
epidermis and nervous system." [CARO:DOS, ISBN:0-582-22708-9]
is_a: CARO:0000001 ! germ layer
[Term]
id: CARO:0000024
name: organ
def: "Anatomical structure, which consists of the maximal set of organ
parts so connected to one another that together they constitute a unit of
macroscopic anatomy, structurally distinct from other such units."
[CARO:MAH]
is_a: CARO:0000003 ! anatomical structure
[Term]
id: CARO:0000025
name: compartment boundary
def: "An anatomical surface bisecting a contiguous tissue and forming
a\nboundary between compartments that cells do not cross during
development." [CARO:DOS]
is_a: CARO:0000010 ! anatomical surface
[Term]
id: CARO:0000026
name: extracellular component
def: "Anatomical structure which is external to the plasma membrane of a
cell." [CARO:MAH]
is_a: CARO:0000003 ! anatomical structure
[Term]
id: CARO:0000027
name: male organism
def: "Anatomical structure which is the maximal aggregate manifestation
of an individual member of the species that can produce male gametes."
[CARO:MAH]
is_a: CARO:0000012 ! organism
[Term]
id: CARO:0000028
name: female organism
def: "Anatomical structure which is the maximal aggregate manifestation
of an individual member of the species that can produce female gametes."
[CARO:MAH]
is_a: CARO:0000012 ! organism
[Term]
id: CARO:0000029
name: hermaphroditic organism
def: "Anatomical structure which is the maximal aggregate manifestation
of an individual member of the species that can produce both male and
female gametes." [CARO:MAH]
is_a: CARO:0000012 ! organism
[Term]
id: CARO:0000030
name: asexual organism
def: "Anatomical structure which is the maximal aggregate manifestation
of an individual member of the species that does not produce gametes."
[CARO:MAH]
is_a: CARO:0000012 ! organism
[Term]
id: CARO:0000031
name: respiratory system
is_obsolete: true
[Term]
id: CARO:0000032
name: cardinal organism part
def: "Anatomical structure, which has as its parts a maximal set of
diverse subclasses of organ and organ parts. Forms a distinct
morphological subdivision of the organism; together all cardinal organism
parts constitute the entire organism." [CARO:MAH]
is_a: CARO:0000003 ! anatomical structure
[Term]
id: CARO:0000033
name: anlage
def: "Contiguous tissue contributing all or the majority of its cells to
one or a few mature structures but not (yet) having distinct
morphological boundaries." [CARO:DOS]
related_synonym: "field" []
is_a: CARO:0000043 ! portion of tissue
[Term]
id: CARO:0000034
name: primordium
def: "Contiguous tissue contributing all of its cells to one or a few
mature structures and having morphologically distinct boundaries."
[CARO:DOS]
related_synonym: "primitive structure" []
is_a: CARO:0000043 ! portion of tissue
[Term]
id: CARO:0000035
name: endoderm
def: "Gross division of embryo consisting of contiguous tissue specified
early in embryogenesis (typically during or just prior to gastrulation),
which gives rise to the a limited set of mature adult structures,
primarily the digestive tract, respiratory tract and associated glandular
epithelium." [CARO:DOS, ISBN:0-582-22708-9]
is_a: CARO:0000001 ! germ layer
[Term]
id: CARO:0000036
name: presumptive organ
def: "Set of anatomical structures that develop into a specific organ
part." [CARO:DOS]
is_a: CARO:0000039 ! anatomical set
[Term]
id: CARO:0000037
name: presumptive cardinal organism part
def: "Set of anatomical structures that wil develop into a specific
cardinal organism part." [CARO:DOS]
is_a: CARO:0000039 ! anatomical set
[Term]
id: CARO:0000038
name: presumptive organ system
def: "Set of anatomical structures that develop into a specific organ
system." [CARO:DOS]
comment: Adjective here seems to refer to 'functional' ??? dos
is_a: CARO:0000039 ! anatomical set
[Term]
id: CARO:0000039
name: anatomical set
def: "Material anatomical entity which consists of the maximum number of
discontinuous members of the same class." [CARO:MAH]
is_a: CARO:0000006 ! material anatomical entity
[Term]
id: CARO:0000040
name: acellular anatomical structure
def: "Anatomical structure which consists of cellular or extracellular
components, which together does not constitute a cell or portion of
tissue." [CARO:MAH]
is_a: CARO:0000003 ! anatomical structure
[Term]
id: CARO:0000041
name: anatomical cluster
def: "Anatomical structure, which has as its parts a heterogeneous
collection of organs, organ parts, cells or organism part subdivisions
that are adjacent to, or continuous with one another; does not constitute
an organ, organ system or organ system subdivision, or organism part or
organism part subdivision." [CARO:MAH]
is_a: CARO:0000003 ! anatomical structure
[Term]
id: CARO:0000042
name: extraembryonic structure
is_a: CARO:0000003 ! anatomical structure
[Term]
id: CARO:0000043
name: portion of tissue
def: "Anatomical structure, which consists of similar cells and
intercellular matrix, aggregated according to genetically determined
spatial relationships." [CARO:MAH]
is_a: CARO:0000003 ! anatomical structure
[Term]
id: CARO:0000044
name: portion of mesenchyme
is_a: CARO:0000043 ! portion of tissue
[Term]
id: CARO:0000045
name: sequential herpahroditic organism
def: "Anatomical structure which is the maximal aggregate manifestation
of an individual member of the species that first produces gametes of one
sex, and then later the other sex." [CARO:MAH]
is_a: CARO:0000029 ! hermaphroditic organism
[Term]
id: CARO:0000046
name: serially hermaphroditic organism
def: "Anatomical structure which is the maximal aggregate manifestation
of an individual member of the species that produces both male and female
gametes at the same time." [CARO:MAH]
is_a: CARO:0000029 ! hermaphroditic organism
[Term]
id: CARO:0000047
name: solid eye
is_a: CARO:0000050 ! solid organ
[Term]
id: CARO:0000048
name: cavitated organ
is_a: CARO:0000024 ! organ
[Term]
id: CARO:0000049
name: cavitated eye
is_a: CARO:0000048 ! cavitated organ
[Term]
id: CARO:0000050
name: solid organ
is_a: CARO:0000024 ! organ
[Term]
id: CARO:0000051
name: heart
def: "A cavitated organ continuous with blood? oxygen containing
cells?????" [CARO:MAH]
is_a: CARO:0000048 ! cavitated organ
[Term]
id: CARO:0000052
name: tubular heart
is_a: CARO:0000051 ! heart
[Term]
id: CARO:0000053
name: four chambered heart
is_a: CARO:0000051 ! heart
[Term]
id: CARO:0000054
name: three chambered heart
is_a: CARO:0000051 ! heart
[Term]
id: CARO:0000055
name: cardinal organ part
def: "Anatomical structure which consists of two or more types of
tissues." [CARO:MAH]
is_a: CARO:0000003 ! anatomical structure
[Term]
id: CARO:0000056
name: compartment
def: "Portion of tissue that is bounded by a compartment boundary. Cells
in neighboring compartments cannot mix." [CARO:DOS]
is_a: CARO:0000043 ! portion of tissue
[Term]
id: CARO:0000057
name: set of germ layer derivatives
def: "An anatomical structure which is derived from a single germ-layer."
[CARO:DOS]
comment: This doesn't fit happily in anatomical set. The other terms for
developing bits in this group refer to the collection of objects in a
set. Objects in that set are part_of the parent term. This refers to
individual members of the set. Objects in the set have an is_a
relationship to it.
is_a: CARO:0000039 ! anatomical set
[Term]
id: CARO:0000058
name: set of ectoderm derivatives
def: "An anatomical structure which is wholly derived from the ectoderm."
[CARO:DOS]
is_a: CARO:0000057 ! set of germ layer derivatives
[Term]
id: CARO:0000059
name: set of endoderm derivatives
def: "An anatomical structure which is wholly derived from the endoderm."
[CARO:DOS]
is_a: CARO:0000057 ! set of germ layer derivatives
[Term]
id: CARO:0000060
name: set of mesoderm derivatives
def: "An anatomical structure which is wholly derived from the mesoderm."
[CARO:DOS]
is_a: CARO:0000057 ! set of germ layer derivatives
[Term]
id: CARO:0000061
name: cardinal organism space
def: "Anatomical space that is part of an organism." [CARO:mah]
is_a: CARO:0000005 ! anatomical space
[Term]
id: CARO:0000062
name: cardinal cell space
def: "Anatomical space that is part of a cell." [CARO:mah]
is_a: CARO:0000005 ! anatomical space
[Term]
id: CARO:0000063
name: portion of cell substance
def: "Material anatomical entity in a gaseous, liquid, semisolid or solid
state found within a cell; produced by the cell or derived from exogenous
substances that have been modified by the cell." [CARO:mah]
is_a: CARO:0000006 ! material anatomical entity
[Term]
id: ID:0000002
name: developing anatomical structure
is_obsolete: true
[Typedef]
id: part_of
name: part_of
is_transitive: true