Lewkowich et al, Page 1 1 Supplementary Figure 1: Identification of pulmonary dendritic cell subsets by flow 2 cytometry. (A) HDM-sensitized A/J mice were treated with AF405 HDM on day 14. 72 3 hours later mice were sacrificed and their lungs were removed. Lungs cell suspensions 4 were stained for flow cytometric analysis of DC population. (A) Gating strategy to 5 identify pulmonary APC populations revealed 5 distinct CD11c+ cell populations. 6 Alveolar Macrophages (AM - CD11cbright, CD11bneg, CD317neg), plasmacytoid DCs 7 (pDCs 8 CD11cbrightCD11bbrightGr1brightCD103neg), 9 CD11cbrightCD11bbrightGr1dimCD103neg) - CD11cdimCD11bnegCD317+), neutrophils inflammatory and DCs (PMNs (Inf myeloid - DCs DCs 10 (CD11cbrightCD11bbrightGr1negCD103neg). (B) Gated DC populations were subsequently 11 examined for expression of PD-L2, and uptake of HDM. Representative plots from a 12 single mouse shown. 13 14 Supplementary Figure 2: In vivo PD-L2 blockade does not alter pulmonary mDC 15 activity. A/J mice were treated with PBS, HDM, HDM + rat IgG2a control (Iso) or HDM 16 + anti PD-L2 (αPD-L2) as described in Materials and Methods. The frequency (A), 17 allergen content (B), and activation status of pulmonary mDCs (C) was assessed by flow 18 cytometry. n = 8 mice from 2 independent experiments. Mean + SEM shown. 19 20 Supplementary Figure 3: In vivo PD-L2 blockade does not enhance IL-12 p40 levels 21 in BAL. A/J mice were treated with PBS or HDM intratracheally on days 0 and 14, and 22 250 µg of rat IgG2a control (Iso) or anti-PD-L2 (αPD-L2) intraperitoneally on days 0, 2, 23 14 and 16, and mice were sacrificed on day 17. BAL was performed, and levels of IL-12 Lewkowich et al, Page 2 24 p40 were assessed by ELISA. MEAN + SEM shown. n = 10 mice from 2 independent 25 experiments. 26 27 Supplementary Figure 4: In vivo PD-L2 or IL-12 blockade does not alter baseline 28 tracheal pressure. A/J mice were treated with PBS or HDM intratracheally on days 0 29 and 14. Mice were given 250 µg of rat IgG2a control (Iso) or anti-PD-L2 (αPD-L2) 30 intraperitoneally on days 0, 2, 14 and 16 and/or 1 mg of rat IgG2a control (Iso) or anti- 31 IL-12 (αIL-12) intraperitoneally on days -2 and 12. Mice were sacrificed on day 17 for 32 assessment of baseline AHR by the APTI method. Tracheal pressure was monitored for 1 33 minute prior to injection of intravenous acetylcholine. n = 10 mice from 2 independent 34 experiments. Mean + SEM shown. 35 36 Supplementary Figure 5: Changes in AHR observed in mice received PD-L2 37 blocking and/or IL-12 blocking mAbs are not associated with changes in local 38 changes in cytokine mRNA levels. A/J mice were treated with PBS or HDM 39 intratracheally on days 0 and 14. Mice were given 250 µg of rat IgG2a control (Iso) or 40 anti-PD-L2 (αPD-L2) intraperitoneally on days 0, 2, 14 and 16 and/or 1 mg of rat IgG2a 41 control (Iso) or anti-IL-12 (αIL-12) intraperitoneally on days -2 and 12. Mice were 42 sacrificed on day 17 and mRNA was isolated from snap-frozen lung samples for analysis 43 of (A) IL-5 and (B) IL-13 expression by RT-PCR. n = 10 mice from 2 independent 44 experiments. Mean + SEM shown. 45 Lewkowich et al, Page 3 46 Supplementary Figure 6: IL-12 and IFNγ inhibits IL-13-driven gene expression, and 47 IL-13 inhibits IFNγ, but not IL-12-driven gene expression. (A) BMDCs were cultured 48 in the presence of medium, IL-12, IL-13, or IL-12 + IL-13 (all at 10 ng/ml) for 18 hours. 49 mRNA was harvested from the cells and expression of IFNγ, a representative IL-12- 50 induced gene, was examined by RT-PCR. (B) BMDCs were cultured in the presence of 51 medium, IFNγ, IL-13, or IFNγ + IL-13 (all at 10 ng/ml) for 18 hours. mRNA was 52 harvested from the cells and expression of IL-13-driven genes (Fizz1, Arg1, CD206) and 53 IFNγ-driven genes (PD-L1) was examined by RT-PCR. (C) BMDCs were cultured in the 54 presence of IL-13, IL-12 + IL-13 (all at 10 ng/ml), or IL-12 + IL-13 + αIFNγ (at 5 µg/ml) 55 for 18 hours. mRNA was harvested from the cells and expression of IL-13-driven genes 56 was examined by RT-PCR. *** and * indicate p < 0.001 and p < 0.5 respectively. n = 4 57 replicates for each condition tested. 1 experiment of 2 performed shown.