Supplementary information A Straumann et al. SUPPLEMENTARY METHODS Biomarker assessment Blood biomarkers: Eosinophil cationic protein (ECP), eosinophil derived neurotoxin (EDN), eotaxin, and TNF- were measured in serum at baseline, weeks 4, 9, 13, and 21 (pre-infusion on treatment days) using commercial immunoassays except EDN concentrations, which were measured using a non-commercial immunoassay.25 These assays were performed using frozen serum samples and all samples from a single patient were analyzed together. IL-5 surface receptor expression on eosinophils was measured by direct immunofluorescence using PE-labeled anti-IL-5 receptor mAb (StemCell Technologies, Grenoble, France) and flow cytometry (FACS Calibur, BD Biosciences, Basel, Switzerland). Eosinophils were identified within the granulocyte gate by using FITC-labeled anti-CC chemokine receptor 3 (CCR3; R&D Systems Europe Ltd., Abingdon, UK) and FITC-labeled anti-CD9 mAbs (BD Biosciences). Receptor density was determined by analyzing the mean channel of fluorescence (mcf). For IL-5 receptor analysis, anticoagulated blood was analyzed within 10 h of collection. Oesophageal tissue markers: Oesophageal biopsy tissue sections were obtained at screening (pre-infusion), week 4, and week 13 (as no patient had demonstrated a histological remission, there were no biopsies taken after 1 STFU. Tissues were fixed in 4% formaldehyde in phosphate buffer (pH 7.4), embedded, and sectioned. Four proximal and four distal biopsies were collected at each time point for each patient and embedded in one paraffin block. Indirect immunostainings were performed as previously described. 26 27 The following primary antibodies: anti-ECP (EG1, Pharmacia & Upjohn Diagnostics AB, Uppsala, Sweden), anti-CD3 (DakoCytomation, Glostrup, Denmark), anti-tryptase (DakoCytomation), anti-IL-5 (Santa Cruz Biotechnology, Heidelberg, Germany), anti-TNF-α (Novus Biologicals, Inc, Littleton, CO, USA), anti-transforming growth factor (TGF)-1 (R&D Systems), anti-eotaxin-1, anti-eotaxin-2, anti-eotaxin-3 (all R&D Systems), and antitenascin C (Monosan, Uden, The Netherlands). Ten hpfs (area of one hpf 0.0538 mm2) were viewed per slide such that 80 counts were made (10 x 8 specimens) for each patient and biomarker at each time point, and the numbers of positive cells were derived. If epithelial cells expressed a biomarker, a grading system was used for semiquantitative quantification using a 5-point scale from 0 to 4: 0 = no positive cells, 1 = weak staining, 2 = clear positive staining, 3 = strong positive staining, 4 = very strong positive staining. Sections were also stained with an anti-EDN antibody and analyzed by fluorescence microscopy.28 Here, only the two largest of the four available biopsies in each block were analyzed. To quantify EDN positive cells (=eosinophilia), each specimen was graded on a 7-point scale from 0 to 3 (0 = no eosinophils, 3 = confluent eosinophils). To quantify extracellular EDN deposition, we also used a similar 7-point scale from 0 to 3 (0 = no deposition, 3 = extensive deposition). 2 All stained slides were evaluated by at least two independent investigators (SC, PG, HK, GK, HUS), and the results were averaged to obtain a mean for each patient at each time point. Pharmacokinetic assessment Blood samples (2 mL) for determination of mepolizumab concentrations were collected prior to and 5 min after each infusions on days 0 and 7, and weeks 5 and 9. Additional samples were collected at weeks 4, 13, 21 (STFU), 43 (LTFU), as well as at any early withdrawal visit. Plasma was separated and frozen until analysis. Mepolizumab concentrations were measured using a validated analytical time-resolved fluorescent immunoassay method with 50 ng/mL sensitivity. Plasma concentration data were summarized by sampling times. Immunogenicity assessment Serum samples for the measurement of mepolizumab binding and neutralizing antibodies were collected on days 0 and 7, weeks 4, 5, 9, 13, and 21, and LTFU (week 43) (pre-infusion on treatment days) using an electrochemiluminescent bridging immunoassay according to recommended methods.29 3 SUPPLEMENTARY RESULTS AND DISCUSSION Pharmacokinetics Plasma concentrations of mepolizumab were measured throughout the study. The mean peak concentration 5 min after a single 750 mg mepolizumab dose was approximately 180 g/mL, and, after a second 750 mg dose one week later, it was 267 g/mL (suppl. table 1). Following administration of 1500 mg mepolizumab on weeks 5 and 9, the observed mean peak concentrations were approximately 500 g/mL and 450 g/mL, respectively. Mean plasma concentrations were always greater than 58 g/mL until week 13. At STFU (12 weeks after last infusion), mepolizumab concentrations were still detectable and the mean plasma concentration was 8.4 g/mL (suppl. table 1). At STFU assessment (12 weeks after last infusion), blood eosinophil numbers were low in the mepolizumab group (fig 2). At this time, plasma mepolizumab concentrations ranged from 1.5 g/mL to 21.5 g/mL. At LTFU assessement (34 weeks after last infusion), plasma mepolizumab concentrations were <0.2 g/mL and eosinophil counts were at or above baseline values, except for one patient for whom the plasma mepolizumab concentration was 0.29 g/mL. A correlative description of plasma mepolizumab concentrations and blood eosinophil numbers suggests that plasma mepolizumab levels of about 5 g/mL should be sufficient to keep blood eosinophil numbers below 200/mm3 in EoE patients (suppl. fig 3). This study allows some general conclusions regarding the pharmacological profile of mepolizumab. Although doubling the dose of 4 mepolizumab to 1500 mg increased the peak plasma mepolizumab concentrations, neither blood nor oesophageal eosinophil numbers decreased much more than with the lower dose of 750 mg. Mepolizumab plasma half-life is approximately 20 days (estimated from the data of this study and additional unpublished data). Consistent with a long half-life and a mean peak plasma concentration following the second 1500 mg dose of approximately 450 g/mL, plasma concentrations were approximately 5 g/mL or greater at 12 weeks after the last infusion. Blood eosinophil numbers were below 200 per mm3 during this time. This is likely due to the fact that plasma mepolizumab concentrations of 5 g/mL were sufficient to keep eosinophil numbers within the normal range. However, it should be noted that levels of ECP in blood slightly increased at week 21 (12 weeks after the last infusion) (fig 6), pointing to the possibility that IL-5 was less efficiently neutralized at this time point. These results suggest that it might be sufficient to administer 750 or 1500 mg doses of mepolizumab at 8-12 week intervals in patients receiving long-term treatment. Immunogenicity Sera from two patients treated with mepolizumab were tested positive for mepolizumab binding antibodies on at least one time point. One patient (patient 7) was positive with the lowest titer possible for detection 7 days after the first application of mepolizumab. At later time points, we obtained no longer evidence for mepolizumab binding antibodies in this patient and the eosinophil levels in blood remained suppressed through to the STFU assessment. No adverse effect was reported by this patient. The second 5 patient (patient 8) developed clearly detectable anti-mepolizumab antibodies after he received all four infusions. The antibodies were detected both during EW and LTFU (week 43) visits. The patient reported mild fatigue following the last mepolizumab infusion. The eosinophils remained suppressed at least until the EW visit, suggesting that the anti-mepolizumab immune response had no influence on the pharmacological effect of mepolizumab at this time point. The relationship between antibody production, mepolizumab plasma concentrations, and eosinophil numbers in these two patients is shown in suppl. table 2. SUPPLEMENTARY TABLES Suppl. table 1 Mepolizumab plasma concentrations Mean (SD) Day Dose Week range (mg) n (g/mL) CV (%) Day 1 (pre-dose)* 1 5 0 0 Day 1 (post-dose)* 1 750 5 181.46 (84.41) 47 Week 1 (pre-dose) 6-7 5 65.54 (27.98) 43 Week 1 (post-dose) 6-7 750 5 266.56 (35.46) 13 Week 4 27-28 5 89.37 (26.06) 29 Week 5 (pre-dose) 34-36 5 57.67 (24.23) 42 Week 5 (post-dose) 34-36 1500 5 502.43 (45.34) 9 Week 9 (pre-dose) 62-63 5 103.74 (36.63) 35 Week 9 (post-dose) 62-63 1500 5 446.45 (182.11) 41 Week 13 90-91 5 116.90 (32.92) 28 Week 21 (STFU) 124-205 5 8.38 (7.86) 94 Week 43 (LTFU) 293-308 5 0.164 (0.088) 54 *Pre-dose is just prior to mepolizumab infusion and post-dose is approximately 5 min following end of mepolizumab infusion Abbreviations: STFU, short-term follow-up; LTFU, long-term follow-up; CV, coefficient of variability 6 Suppl. table 2 Comparison of anti-mepolizumab antibody levels, mepolizumab plasma concentrations and blood eosinophil counts in antimepolizumab antibody positive patients Mepolizumab serum Actual Binding Binding study antibody antibody concentration Patient day Visit* assay (Titre) (g/mL) 7 1 Baseline Negative N/A 0 8 Week 1 Positive 2 41.2727 29 Week 4 Negative N/A 93.4086 36 Week 5 Negative N/A 41.6566 64 Week 9 Negative N/A 39.5815 92 Week 13 Negative N/A 67.0014 176 Week 21 Negative N/A 1.3674 295 Week 43 Negative N/A n.d. 8 1 Baseline Negative N/A 0 7 Week 1 Negative N/A 32.7390 28 Week 4 Negative N/A 43.4161 35 Week 5 Negative N/A 22.9542 63 Week 9 Negative N/A 107.570.5 91 Week 13 Negative N/A 104.2563 182 Week 21 Negative N/A 5.2969 223 EW Positive 16 n.d. 300 Week 43 Positive 256 0.1584 *All sampling pre-infusion on treatment days Abbreviations: EW, early withdrawal; n.d., not done. Blood eosinophils (GI/L) 0.54 0.06 0.10 0.04 0.05 0.09 0.12 1.03 0.56 0.14 0.04 0.06 0.05 0.06 0.06 0.11 0.34 7 SUPPLEMENTARY FIGURES Suppl. figure 1 Disposition of the patients. STFU, short-term follow- up (12 weeks after the last infusion). LTFU, long-term follow-up (34 weeks after the last infusion). Screened for eligibility (n=13) Screen failures Eos <20 per hpf (n=2) Randomised (n=11) Mepolizumab (n=5) Completed STFU (n=5) Placebo (n=6) Completed STFU (n=6) Withdrawn Worsening EoE (n=1) Completed LTFU (n=4) Withdrawn Worsening EoE (n=2) Completed LTFU (n=4) Suppl. Figure 1 8 Suppl. figure 2 Identification of esophageal infiltrating cells by immunofluorescence analysis. Representative original results of the identification of eosinophils (ECP positive cells), T cells (CD3 positive cells), and mast cells (tryptase positive cells) before and after mepolizumab and placebo treatment, respectively, are shown (x400). Quantitative analysis of these experiments is shown in the table 3. Placebo Before Mepolizumab After Before After ECP CD3 Tryptase Suppl. Figure 2 9 Suppl. figure 3 Relationship between eosinophil numbers and mepolizumab concentrations in blood. Eosinophil Count (GI/L) 1.2 1 0.8 Placebo 0.6 Mepolizumab 0.4 0.2 0 0 50 100 150 200 Mepolizumab Concentration (g/mL) Suppl. Figure 3 10