Other Databases
Fig 3.2 Peptidase Unit in MEROPS
Fig 3.23 Merops Blast Server Result Page
Fig 3.48 DBGET database links to other databases
Fig 3.52 Graphical hierarchy of Metabolic Pathways
Fig 3.53 Graphical hierarchy of Carbohydrate Metabolism
Fig 3.64 Visualization using hierarchical clustering
Fig 3.66 Architecture of GEO
Fig 3.81 Map View of Chromosome 21
Fig 3.82 The Overview and The Detailed view of the Contig Map
Fig 3.83 The Base Pair view of the Contig Map
Ensembl Gene Report for ENSG00000178446
Gene
CU100_HUMAN (UniProtKB/Swiss-Prot ID) . To view all Ensembl genes
linked to the name click here.
This gene is a member of the human CCDS set: CCDS13581
Ensembl
Gene ID
Genomic
Location
ENSG00000178446
This gene can be found on Chromosome 21 at location 28,833,51128,834,547.
The start of this gene is located in Contig AF165147.1.1.146735.
Description
Prediction
Method
Transcripts
No description
Genes were annotated by the Ensembl automatic analysis pipeline
using either a GeneWise/Exonerate model from a database protein or
a set of aligned cDNAs followed by an ORF prediction.
GeneWise/Exonerate models are further combined with available
aligned cDNAs to annotate UTRs (For more information see V.Curwen et
al. , Genome Res. 2004 14:942-50.)
ENST00000324 ENSP00000326 CU100_HUM [Transcript i [Exon in [Peptide i
961
733
AN
nfo]
fo]
nfo]
SNPs
Regulatory regions
Vega genes
Ensembl genes
ncRNA genes
EST genes
Genscan
Orthologue
Prediction
The following gene(s) have been identified as putative orthologues:
Species
Type
Gene identifier
Pan
troglodytes
1 to
1
ENSPTRG00000013816 (C21orf100)
[MultiContigView] [Align]
No description
Macaca
mulatta
1 to
1
ENSMMUG00000006520 (CU100_HUMAN)
[MultiContigView] [Align]
No description
View alignments of homologies.
This gene can be viewed in genomic alignment with other species
view genomic alignment with 5 eutherian mammals MLAGAN
view genomic alignment with 7 amniota vertebrates MLAGAN
view genomic alignment with 3 primates MLAGAN
view genomic alignment with Rattus norvegicus
view genomic alignment with Macaca mulatta
view genomic alignment with Canis familiaris
view genomic alignment with Pan troglodytes
view genomic alignment with Mus musculus
view genomic alignment with Bos taurus
view genomic alignment with Gallus gallus
Gene DAS Report
DAS
Sources
AltSplice (Alternative splice database)
AltTrans (Alternative Transcript Diversity Database)
ArrayExpress (Gene Expression Database)
GAD (Genetic Association Database)
HGNC (HUGO Gene Nomenclature Committee)
HUGO_text (PubMed text-mining via HUGO symbol)
Phenotypes (Associated directly or via orthologues or protein
families)
Protonet (Global classification of proteins into hierarchical clusters)
RZPD verif. cDNA (RZPD sequence verified non-redundant cDNA
clone sets)
RZPD esiRNA (RZPD gene silencing (RNAi) resources)
RZPD Prot Exp (RZPD clones ready for protein expression)
Reactome (Knowledgebase of biological processes)
UniProt (Protein knowledgebase)
Update
Transcript ENST00000324961
Transcript
CU100_HUMAN (UniProtKB/Swiss-Prot ID) . To view all Ensembl genes
linked to the name click here.
This transcript is a member of the human CCDS set: CCDS13581
Transcript
information
Similarity
Matches
Exons: 2 Transcript length: 869 bps Protein length: 55 residues
[Further Transcript info] [Exon information] [Protein information]
This Ensembl entry corresponds to the following database identifiers:
CCDS:
CCDS13581.1
UniProtKB/Swiss-Prot:
CU100_HUMAN [Target %id: 100; Query %id:
100] [align]
RefSeq peptide:
NP_659470.1 [Target %id: 100; Query %id: 100]
[align]
RefSeq DNA:
NM_145033.2 [align]
UniProtKB/TrEMBL:
Q494S0_HUMAN [Target %id: 98; Query %id:
98] [align]
Q494S4_HUMAN [Target %id: 100; Query %id:
100] [align]
EntrezGene:
118421
Agilent CGH:
A_14_P128592 [Target %id: 6; Query %id: 100]
Agilent Probe:
A_23_P377839 [Target %id: 6; Query %id: 98]
EMBL:
AY063458 [align]
AY063459 [align]
BC101414 [align]
BC101416 [align]
BC101419 [align]
BC101420 [align]
IPI:
IPI00168278.1 [Target %id: 100; Query %id:
100]
Protein ID:
AAI01415.1 [align]
AAI01417.1 [align]
AAI01420.1 [align]
AAI01421.1 [align]
AAL60598.1 [align]
AAL60599.1 [align]
UniGene:
Hs.438549 [Target %id: 99; Query %id: 98]
Affymx Microarray
U133:
1552466_x_at
1554405_a_at
Hs2.208166.1.S1_3p_s
Affymx Microarray U95:
Protein
Family
89348_at
ENSF00000016456 : UNKNOWN
This cluster contains 1 Ensembl gene member(s) in this species.
Transcript
structure
Protein
features
Fig 3.84 Ensemble Gene Report