checkCIF/PLATON report
No syntax errors found. CIF dictionary Interpreting this report
Datablock: tcc
Bond precision: C-C = 0.0087 A Wavelength=0.71073
Cell: a=11.6009(10) b=18.5966(16) c=29.423(3)
alpha=76.390(5) beta=85.934(6) gamma=89.359(6)
Temperature: 108 K
Calculated Reported
Volume 6153.8(10) 6153.7(9)
Space group P -1 P-1
Hall group -P 1 ?
Moiety formula C110 H122 B2 N12 O4 Zn2
C110 H122 B2 N12 O4 Zn2,
1.5(C6 H14)
Sum formula C110 H122 B2 N12 O4 Zn2 C119 H143 B2 N12 O4 Zn2
Mr 1828.60 1957.81
Dx,g cm-3 0.987 1.057
Z22
Mu (mm-1) 0.437 0.441
F000 1936.0 2086.0
F000’ 1937.72
h,k,lmax 12,19,31 12,19,31
Nref 15432 15210
Tmin,Tmax 0.909,0.932 0.865,0.933
Tmin’ 0.861
Correction method= MULTI-SCAN
Data completeness= 0.986 Theta(max)= 22.160
R(reflections)= 0.0605( 9524) wR2(reflections)= 0.1704( 15210)
S = 0.993 Npar= 1196
The following ALERTS were generated. Each ALERT has the format
test-name_ALERT_alert-type_alert-level.
Click on the hyperlinks for more details of the test.
Alert level A
THETM01_ALERT_3_A The value of sine(theta_max)/wavelength is less than 0.550
Calculated sin(theta_max)/wavelength = 0.5307
PLAT093_ALERT_1_A No su’s on H-atoms, but refinement reported as . mixed
PLAT242_ALERT_2_A Check Low Ueq as Compared to Neighbors for C95
PLAT602_ALERT_2_A VERY LARGE Solvent Accessible VOID(S) in Structure !
Alert level B
CHEMW03_ALERT_2_B WARNING: The ratio of given/expected molecular weight as
calculated from the _atom_site* data lies outside
the range 0.95 <> 1.05
From the CIF: _cell_formula_units_Z 2
From the CIF: _chemical_formula_weight 1957.81
TEST: Calculate formula weight from _atom_site_*
atom mass num sum
C 12.01 110.00 1321.21
H 1.01 122.00 122.98
B 10.81 2.00 21.62
N 14.01 12.00 168.08
O 16.00 4.00 64.00
Zn 65.39 2.00 130.78
Calculated formula weight 1828.67
PLAT043_ALERT_1_B Check Reported Molecular Weight ................ 1957.81
PLAT049_ALERT_1_B Calculated Density less than 1.0 gcm-3 ......... 0.99
PLAT220_ALERT_2_B Large Non-Solvent C Ueq(max)/Ueq(min) ... 8.12 Ratio
PLAT222_ALERT_3_B Large Non-Solvent H Uiso(max)/Uiso(min) .. 9.50 Ratio
PLAT234_ALERT_4_B Large Hirshfeld Difference C95 -- C96 .. 0.26 Ang.
PLAT234_ALERT_4_B Large Hirshfeld Difference C108 -- C109 .. 0.26 Ang.
PLAT242_ALERT_2_B Check Low Ueq as Compared to Neighbors for C56
PLAT242_ALERT_2_B Check Low Ueq as Compared to Neighbors for C108
Alert level C
PLAT041_ALERT_1_C Calc. and Reported SumFormula Strings Differ ?
PLAT068_ALERT_1_C Reported F000 Differs from Calcd (or Missing)... ?
PLAT194_ALERT_1_C Missing _cell_measurement_reflns_used datum .... ?
PLAT195_ALERT_1_C Missing _cell_measurement_theta_max datum .... ?
PLAT196_ALERT_1_C Missing _cell_measurement_theta_min datum .... ?
PLAT213_ALERT_2_C Atom C71 has ADP max/min Ratio ..... 3.60 prola
PLAT213_ALERT_2_C Atom C96 has ADP max/min Ratio ..... 3.20 prola
PLAT213_ALERT_2_C Atom C109 has ADP max/min Ratio ..... 3.30 prola
PLAT213_ALERT_2_C Atom C110 has ADP max/min Ratio ..... 3.40 prola
PLAT230_ALERT_2_C Hirshfeld Test Diff for C69 -- C70 .. 6.00 su
PLAT234_ALERT_4_C Large Hirshfeld Difference C53 -- C56 .. 0.17 Ang.
PLAT234_ALERT_4_C Large Hirshfeld Difference C56 -- C57 .. 0.15 Ang.
PLAT234_ALERT_4_C Large Hirshfeld Difference C105 -- C106 .. 0.19 Ang.
PLAT234_ALERT_4_C Large Hirshfeld Difference C105 -- C108 .. 0.17 Ang.
PLAT241_ALERT_2_C Check High Ueq as Compared to Neighbors for C20
PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for C82
PLAT341_ALERT_3_C Low Bond Precision on C-C Bonds (x 1000) Ang .. 9
PLAT731_ALERT_1_C Bond Calc 1.476(15), Rep 1.477(7) ...... 2.14 su-Ra
C69 -C70 1.555 1.555 # 112
PLAT731_ALERT_1_C Bond Calc 1.473(16), Rep 1.473(7) ...... 2.29 su-Ra
C95 -C96 1.555 1.555 # 137
Alert level G
FORMU01_ALERT_2_G There is a discrepancy between the atom counts in the
_chemical_formula_sum and the formula from the _atom_site* data.
Atom count from _chemical_formula_sum:C119 H143 B2 N12 O4 Zn2
Atom count from the _atom_site data: C110 H122 B2 N12 O4 Zn2
CELLZ01_ALERT_1_G Difference between formula and atom_site contents detected.
CELLZ01_ALERT_1_G ALERT: Large difference may be due to a
symmetry error - see SYMMG tests
From the CIF: _cell_formula_units_Z 2
From the CIF: _chemical_formula_sum C119 H143 B2 N12 O4 Zn2
TEST: Compare cell contents of formula and atom_site data
atom Z*formula cif sites diff
C 238.00 220.00 18.00
H 286.00 244.00 42.00
B 4.00 4.00 0.00
N 24.00 24.00 0.00
O 8.00 8.00 0.00
Zn 4.00 4.00 0.00
PLAT002_ALERT_2_G Number of Distance or Angle Restraints on AtSite 18
PLAT333_ALERT_2_G Check Large Av C6-Ring C-C Dist. C1 -C6 1.42 Ang.
PLAT380_ALERT_4_G Check Incorrectly? Oriented X(sp2)-Methyl Moiety C85
PLAT794_ALERT_5_G Note: Tentative Bond Valency for Zn1 (II) 1.95
PLAT794_ALERT_5_G Note: Tentative Bond Valency for Zn2 (II) 1.96
PLAT860_ALERT_3_G Note: Number of Least-Squares Restraints ....... 45
4 ALERT level A = Most likely a serious problem - resolve or explain
9 ALERT level B = A potentially serious problem, consider carefully
19 ALERT level C = Check. Ensure it is not caused by an omission or oversight
9 ALERT level G = General information/check it is not something unexpected
12 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
16 ALERT type 2 Indicator that the structure model may be wrong or deficient
4 ALERT type 3 Indicator that the structure quality may be low
7 ALERT type 4 Improvement, methodology, query or suggestion
2 ALERT type 5 Informative message, check
It is advisable to attempt to resolve as many as possible of the alerts in all categories. Often the minor alerts point to easily fixed oversights, errors and omissions in your CIF or refinement strategy, so attention to these fine details can be worthwhile. In
order to resolve some
of the more serious problems it may be necessary to carry out additional measurements or structure refinements. However, the purpose of your study may justify the reported deviations and the more serious of these should normally be commented upon
in the discussion or
experimental section of a paper or in the "special_details" fields of the CIF. checkCIF was carefully designed to identify outliers and unusual parameters, but every test has its limitations and alerts that are not important in a particular case may appear.
Conversely, the
absence of alerts does not guarantee there are no aspects of the results needing attention. It is up to the individual to critically assess their own results and, if necessary, seek expert advice.
Publication of your CIF in IUCr journals
A basic structural check has been run on your CIF. These basic checks will be run on all CIFs submitted for publication in IUCr journals (Acta Crystallographica, Journal of Applied Crystallography, Journal of Synchrotron Radiation); however, if you
intend to submit to Acta
Crystallographica Section C or E, you should make sure that full publication checks are run on the final version of your CIF prior to submission.
Publication of your CIF in other journals
Please refer to the Notes for Authors of the relevant journal for any special instructions relating to CIF submission.
PLATON version of 16/02/2011; check.def file version of 16/02/2011
Datablock tcc - ellipsoid plot