Allele-specific multiplex PCR for the dectection of Cdx

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Cdx-2 polymorphism in the promoter region of the human vitamin D receptor gene determines susceptibility to
fracture in the elderly
Yue Fang1, Joyce B. J. van Meurs1, Arjan P. Bergink1,2, Albert Hofman2,
Cornelia M. van Duijn2, Johannes P. T. M. van Leeuwen1,
Huibert A. P. Pols1,2, André G. Uitterlinden1,2
1
Department of Internal Medicine and 2 Department of Epidemiology, Erasmus Medical Centre Rotterdam, The Netherlands
A single nucleotide polymorphism (SNP) within a binding site of the intestinal-specific transcription factor Cdx-2 in the promoter region
of the human Vitamin D Receptor (VDR) gene was previously reported. It was found to modulate the transcription of the hVDR gene and
to be associated with decreased BMD in a small group of postmenopausal Japanese women. We here report the association analysis of this
polymorphism in a large epidemiological cohort of Caucasians. We determined that the location of the G to A substitution is in the
promoter region of exon 1e (1e-G1760A) of the VDR gene, and developed an allele-specific multiplex PCR test to determine the Cdx-2
genotype. By comparing the frequency of the A-allele in eight different ethnic groups, we observed a negative correlation between
prevalence of the A-allele and published hip fracture incidence rates in these ethnic groups (p = 0.006 for men and p = 0.02 for women),
suggesting a protective effect of this allele on fracture risk. Subsequently, an association study of this SNP in a large cohort of 2848 Dutch
Caucasian men and women, aged 55 years or older was performed. The A-allele (population frequency 19%) had a protective effect on
occurrence of osteoporotic fractures, especially for non-vertebral fracture in women (Relative Risk of AA vs. GG genotype is 0.2, 95%CI
is 0.05-0.8). This effect remained after adjustment for age, weight and bone mineral density (BMD). We conclude that the A-allele of the
VDR Cdx-2 polymorphism is present in Caucasians, albeit at low frequency, and demonstrate a protective effect of this allele on risk of
fracture.
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