References of SupplementaryTable2
Acosta MC, Premoli AC (2010) Evidence of chloroplast capture in South American
Nothofagus (subgenus Nothofagus, Nothofagaceae). Molecular Phylogenetics and
Evolution, 54, 235-242.
Ahrens ME, Ross KG, Shoemaker DD (2005) Phylogeographic structure of the fire ant
solenopsis invicta in its native South American range: roles of natural barriers and
habitat connectivity. Evolution, 59, 1733-1743.
Alarcon O, D'Elia G, Lessa EP, Pardinas UFJ (2011) Phylogeographic Structure of the
Fossorial Long-Clawed Mouse Chelemys macronyx (Cricetidae: Sigmodontinae).
Zoological Studies, 50, 682-688.
Alberti AC, Confalonieri VA, Zandomeni RO, Vilardi JR (2008) Phylogeographic
studies on natural populations of the South American fruit fly Anastrepha
fraterculus (Diptera : Tephritidae). Genetica, 132,1-8.
Aleixo A (2004) Historical diversification of a Terra-firme forest bird superspecies: a
phylogeographic perspective on the role of different hypotheses of Amazonian
diversification. Evolution, 58, 1303-1317.
Alexander HJ, Taylor JS, Wu SST, Breden F (2006) Parallel evolution and vicariance in
the guppy (Poecilia reticulata) over multiple spatial and temporal scales. Evolution,
60, 2352-2369.
Amico GC, Nickrent DL (2009) Population structure and phylogeography of the
mistletoes Tristerix corymbosus and T. aphyllus (Loranthaceae) using chloroplast
DNA sequence variation. American Journal of Botany, 96, 1571-1580.
Ascunce MS, Hasson E, Mulligan CJ, Mudry MD (2007) Mitochondrial sequence
diversity of the southernmost extant New World monkey, Alouatta caraya.
Molecular Phylogenetics and Evolution, 43, 202-215.
Avila LJ, Morando M, Sites JW (2006) Congeneric phylogeography: hypothesizing
species limits and evolutionary processes in Patagonian lizards of the Liolaemus
boulengeri group (Squamata: Liolaemini). Biological Journal of the Linnean
Society, 89, 241-275.
Banguera-Hinestroza E, Cardenas H, Ruiz-Garcia M et al. (2002) Molecular
identification of evolutionarily significant units in the Amazon River dolphin Inia sp
(Cetacea: Iniidae). Journal of Heredity, 93, 312-322.
Barber BR, Unmack PJ, Perez-Losada M, Johnson JB, Crandall KA (2011) Different
processes lead to similar patterns: a test of codivergence and the role of sea level
and climate changes in shaping a southern temperate freshwater assemblage. BMC
Evolutionary Biology, 11, 343.
Beheregaray LB, Sunnucks P, Briscoe DA (2002) A rapid fish radiation associated with
the last sea-level changes in southern Brazil: the silverside Odontesthes perugiae
complex. Proceedings of the Royal Society of London Series B - Biological
Sciences, 269, 65-73.
Boisselier-Dubayle MC, Leblois R, Samadi S, Lambourdiere J, Sarthou C (2010)
Genetic structure of the xerophilous bromeliad Pitcairnia geyskesii on inselbergs in
French Guiana - a test of the forest refuge hypothesis. Ecography, 33, 175-184.
Bonvicino CR, Goncalves PR, de Oliveira JA, de Oliveira LFB, Mattevi MS (2009)
Divergence in Zygodontomys (Rodentia: Sigmodontinae) and Distribution of
Amazonian Savannas. Journal of Heredity, 100, 322-328.
Breitman MF, Avila LJ, Sites JW Jr, Morando M (2011) Lizards from the end of the
world: phylogenetic relationships of the Liolaemus lineomaculatus section
(Squamata: Iguania: Liolaemini). Molecular Phylogenetics and Evolution, 59, 36476.
Brunes TO, Sequeira F, Haddad CFB, Alexandrino J (2010) Gene and species trees of a
Neotropical group of treefrogs: genetic diversification in the Brazilian Atlantic
Forest and the origin of a polyploid species.Molecular Phylogenetics and Evolution,
57, 1120-1133.
Cabanne GS, d'Horta FM, Sari EHR, Santos FR, Miyaki CY (2008) Nuclear and
mitochondrial phylogeography of the Atlantic forest endemic Xiphorhynchus fuscus
(Aves: Dendrocolaptidae): Biogeography and systematics implications. Molecular
Phylogenetics and Evolution, 49, 760-773.
Cabanne GS, Santos FR, Miyaki CY (2007) Phylogeography of Xiphorhynchus fuscus
(Passeriformes, Dendrocolaptidae): vicariance and recent demographic expansion in
southern Atlantic forest. Biological Journal of the Linnean Society, 91, 73-84.
Cabanne GS, D'Horta FM, Meyer D, Silva JMC, Miyaki CY (2011) Evolution of
Dendrocolaptes platyrostris (Aves: Furnariidae) between the South American open
vegetation corridor and the Atlantic forest. Biological Journal of the Linnean
Society, 103, 801–820.
Cadena CD, Klicka J, Ricklefs RE (2007) Evolutionary differentiation in the
Neotropical montane region: molecular phylogenetics and phylogeography of
Buarremon brush-finches (Aves, Emberizidae). Molecular Phylogenetics and
Evolution, 44, 993-1016.
Cadena CD, Gutierrez-Pinto N, Davila N, Chesser RT (2011) No population genetic
structure in a widespread aquatic songbird from the Neotropics. Molecular
Phylogenetics and Evolution, 58, 540-545.
Caetano S, Prado D, Pennington RT et al. (2008) The history of Seasonally Dry
Tropical Forests in eastern South America: inferences from the genetic structure of
the tree Astronium urundeuva (Anacardiaceae). Molecular Ecology, 17, 3147-3159.
Caicedo AL, Schaal BA (2004) Population structure and phylogeography of Solanum
pimpinellifolium inferred from a nuclear gene. Molecular Ecology, 13, 1871-1882.
Camargo A, De Sá RO, Heyer WR (2006) Phylogenetic analyses of mtDNA sequences
reveal three cryptic lineages in the widespread neotropical frog Leptodactylus fuscus
(Schneider, 1799) (Anura, Leptodactylidae). Biological Journal of the Linnean
Society, 87, 325-341.
Campagna L, Geale K, Handford P et al. (2011) A molecular phylogeny of the SierraFinches (Phrygilus, Passeriformes): extreme polyphyly in a group of Andean
specialists. Molecular Phylogenetics and Evolution, 61, 521-33.
Canon C, D'Elia G, Pardinas UFJ, Lessa EP (2010) Phylogeography of Loxodontomys
micropus with comments on the alpha taxonomy of Loxodontomys (Cricetidae:
Sigmodontinae). Journal of Mammalogy, 91, 1449-1458.
Cantanhede AM, Da Silva VMF, Farias IP et al. (2005) Phylogeography and population
genetics of the endangered Amazonian manatee, Trichechus inunguis Natterer, 1883
(Mammalia, Sirenia). Molecular Ecology, 14, 401–413.
Caparroz R, Miyaki CY, Baker AJ (2009a) Contrasting phylogeographic patterns in
mitochondrial DNA and microsatellites: evidence of female philopatry and malebiased gene flow among regional populations of the blue-and-yellow macaw
(Psittaciformes: Ara ararauna) in Brazil. The Auk, 126, 359-370.
Caparroz R, Seixas GHF, Berkunsky I, Collevatti RG (2009b) The role of demography
and climatic events in shaping the phylogeography of Amazona aestiva
(Psittaciformes, Aves) and definition of management units for conservation.
Diversity and Distributions, 15, 459-468.
Caramaschi FP, Nascimento FF, Cerqueira R, Bonvicino CR (2011) Genetic diversity
of wild populations of the grey short-tailed opossum, Monodelphis domestica
(Didelphimorphia: Didelphidae), in Brazilian landscapes. Biological Journal of the
Linnean Society, 104, 251–263.
Cardenas L, Castilla JC, Viard F (2009) A phylogeographical analysis across three
biogeographical provinces of the south-eastern Pacific: the case of the marine
gastropod Concholepas concholepas. Journal of Biogeography, 36, 969-981.
Cardoso YP, Montoya-Burgos JI (2009) Unexpected diversity in the catfish
Pseudancistrus brevispinis reveals dispersal routes in a Neotropical center of
endemism: the Guyanas Region. Molecular Ecology, 18, 947-964.
Carnaval AC (2002) Phylogeography of four frog species in forest fragments of
Northeastern Brazil - a preliminary study. Integrative and Comparative Biology, 42,
913-921.
Carnaval AC, Bates JM (2007) Amphibian DNA shows marked genetic structure and
tracks Pleistocene climate change in northeastern Brazil. Evolution, 61, 2942-2957.
Carnaval AC, Hickerson MJ, Haddad CFB, Rodrigues MT, Moritz C (2009) Stability
predicts genetic diversity in the Brazilian Atlantic Forest hotspot. Science, 323, 785789.
Carvalho BD, Oliveira LFB, Langguth A et al. (2011) Phylogenetic relationships and
phylogeographic patterns in Monodelphis (Didelphimorphia: Didelphidae). Journal
of Mammalogy, 92, 121-133.
Casado F, Bonvicino CR, Seuánez HN (2007) Phylogeographic analyses of Callicebus
lugens (Platyrrhini, primates). Journal of Heredity, 98, 88-92.
Chacon SMI, Pickersgill B, Debouck DG, Arias JS (2007) Phylogeographic analysis of
the chloroplast DNA variation in wild common bean (Phaseolus vulgaris L.) in the
Americas. Plant Systematics and Evolution, 266, 175-195.
Chaves JA, Pollinger JP, Smith TB, LeBuhn G (2007) The role of geography and
ecology in shaping the phylogeography of the speckled hummingbird (Adelomyia
melanogenys) in Ecuador. Molecular Phylogenetics and Evolution, 43, 795-807.
Chaves JA, Smith TB (2011) Evolutionary patterns of diversification in the Andean
hummingbird genus Adelomyia. Molecular Phylogenetics and Evolution, 60, 207218.
Chek AA, Lougheed SC, Bogart JP, Boag PT (2001) Perception and history: molecular
phylogeny of a diverse group of neotropical frogs, the 30-chromosome Hyla (Anura:
Hylidae). Molecular Phylogenetics and Evolution, 18, 370-385.
Cheviron ZA, Hackett SJ, Capparella AP (2005) Complex evolutionary history of a
Neotropical lowland forest bird (Lepidothrix coronata) and its implications for
historical hypotheses of the origin of Neotropical avian diversity. Molecular
Phylogenetics and Evolution, 36, 338-357.
Collevatti RG, Grattapaglia D, Hay JD (2003) Evidences for multiple maternal lineages
of Caryocar brasiliense populations in the Brazilian Cerrado based on the analysis
of chloroplast DNA sequences and microsatellite haplotype variation. Molecular
Ecology, 12, 105-115.
Collevatti RG, Rabelo SG, Vieira RF (2009) Phylogeography and disjunct distribution
in Lychnophora ericoides (Asteraceae), an endangered cerrado shrub species.
Annals of Botany, 104, 655-664.
Colombi VH, Lopes SR, Fagundes V (2010) Testing the Rio Doce as a riverine barrier
in shaping the Atlantic rainforest population divergence in the rodent Akodon
cursor. Genetics and Molecular Biology, 33, 785-789.
Confalonieri VA, Sequeira AS, Todaro L, Vilardi JC (1998) Mitochondrial DNA and
phylogeography of the grasshopper Trimerotropis pallidipennis in relation to clinal
distribution of chromosome polymorphisms. Heredity, 81, 444-452.
Cooke GM, Chao NL, Beheregaray LB (2009) Phylogeography of a flooded forest
specialist fish from central Amazonia based on intron DNA: the cardinal tetra
Paracheirodon axelrodi. Freshwater Biology, 54, 1216-1232.
Correa C, Pastenes L, Sallaberry M, Veloso A, Mendez MA (2010) Phylogeography of
Rhinella spinulosa (Anura: Bufonidae) in northern Chile. Amphibia-Reptilia, 31, 8596.
Cosacov A, Sersic AN, Sosa V, Johnson LA, Cocucci AA (2010) Multiple periglacial
refugia in the Patagonian steppe and post-glacial colonization of the Andes: the
phylogeography of Calceolaria polyrhiza. Journal of Biogeography, 37, 1463-1477.
Costa LP (2003) The historical bridge between the Amazon and the Atlantic Forest of
Brazil: a study of molecular phylogeography with small mammals. Journal of
Biogeography, 30, 71-86.
Culver M, Johnson WE, Pecon-Slattery J, O'Brien SJ (2000) Genomic ancestry of the
American puma (Puma concolor). Journal of Heredity, 91, 186-197.
D'Horta FM, Cabanne GS, Meyer D, Miyaki CY (2011) The genetic effects of Late
Quaternary climatic changes over a tropical latitudinal gradient: diversification of an
Atlantic Forest passerine. Molecular Ecology, 20, 1923-1935.
Da Silva MNF, Patton JL (1998) Molecular phylogeography and the evolution and
conservation of Amazonian mammals. Molecular Ecology, 7, 475-486.
De Aranzamendi MC, Bastida R, Gardenal CN (2011) Different evolutionary histories
in two sympatric limpets of the genus Nacella (Patellogastropoda) in the Southwestern Atlantic coast. Marine Biology, 158, 2405-2418.
De Brito RA, Manfrin MH, Sene FM (2002) Mitochondrial DNA phylogeography of
Brazilian populations of Drosophila buzzatii. Genetics and Molecular Biology, 25,
161-171.
De Oliveira-Neto JF, Pie MR, Chammas MA, Ostrensky A, Boeger WA (2008)
Phylogeography of the blue land crab, Cardisoma guanhumi (Decapoda:
Gecarcinidae) along the Brazilian coast. Journal of the Marine Biological
Association of the United Kingdom, 88, 1417-1423.
De Moraes-Barros N, Silva JAB, Miyaki CY, Morgante JS (2006) Comparative
phylogeography of the atlantic forest endemic sloth (Bradypus torquatus) and the
widespread three-toed sloth (Bradypus variegatus) (Bradypodidae, Xenarthra).
Genetica, 126, 189-198.
De Oliveira LO, Rossi AAB, Martins ER, Batista FRD, Silva RS (2010) Molecular
phylogeography of Carapichea ipecacuanha, an amphitropical shrub that occurs in
the understory of both semideciduous and evergreen forests. Molecular Ecology, 19,
1410-1422.
De Thoisy B, da Silva AG, Ruiz-Garcia M et al. (2010) Population history,
phylogeography, and conservation genetics of the last Neotropical mega-herbivore,
the lowland tapir (Tapirus terrestris). BMC Evolutionary Biology, 10, 278.
Dick CW, Abdul-Salim K, Bermingham E (2003) Molecular systematic analysis reveals
cryptic tertiary diversification of a widespread tropical rain forest tree. American
Naturalist, 162, 691-703.
Dick CW, Roubik DW, Gruber KF, Bermingham E (2004) Long-distance gene flow and
cross-Andean dispersal of lowland rainforest bees (Apidae: Euglossini) revealed by
comparative mitochondrial DNA phylogeography. Molecular Ecology, 13, 3775–
3785.
Dick CW, Heuertz M (2008) The complex biogeographic history of a widespread
tropical tree species. Evolution, 62, 2760-2774.
Ditchfield AD (2000) The comparative phylogeography of Neotropical mammals:
patterns of intraspecific mitochondrial DNA variation among bats contrasted to
nonvolant small mammals. Molecular Ecology, 9, 1307-1318.
Do Nascimento FF, Bonvicino CR, Seuanez HN (2007) Population genetic studies of
Alouatta caraya (Alouattinae, primates): Inferences on geographic distribution and
ecology. American Journal of Primatology, 69, 1093-1104.
Do Nascimento FF, Pereira LG, Geise L et al. (2011) Colonization process of the
brazilian common vesper mouse, Calomys expulsus (Cricetidae, Sigmodontinae): a
biogeographic hypothesis. Journal of Heredity, 102, 260-268.
Dutech C, Maggia L, Tardy C, Joly HI, Jarne P (2003) Tracking a genetic signal of
extinction-recolonization events in a neotropical tree species: Vouacapoua
americana aublet in french guiana. Evolution, 57, 2753-2764.
Eizirik E, Bonatto SL, Johnson WE et al. (1998) Phylogeographic patterns and
evolution of the mitochondrial DNA control region in two neotropical cats
(Mammalia, Felidae). Journal of Molecular Evolution, 47, 613-624.
Eizirik E, Kim JH, Menotti-Raymond M et al. (2001) Phylogeography, population
history and conservation genetics of jaguars (Panthera onca, Mammalia, Felidae).
Molecular Ecology, 10, 65-79.
Elmer KR, Davila JA, Lougheed SC (2007) Cryptic diversity and deep divergence in an
upper Amazonian leaflitter frog, Eleutherodactylus ockendeni. BMC Evolutionary
Biology, 7, 247.
Fairley TL, Povoa MM, Conn JE (2002) Evaluation of the Amazon River delta as a
barrier to gene flow for the regional malaria vector, Anopheles aquasalis (Diptera:
Culicidae) in northeastern Brazil. Journal of Medical Entomology, 39, 861-869.
Fitzpatrick SW, Brasileiro CA, Haddad CFB, Zamudio KR (2009) Geographical
variation in genetic structure of an Atlantic Coastal Forest frog reveals regional
differences in habitat stability. Molecular Ecology, 18, 2877-2896.
Fouquet A, Vences M, Salducci M-D et al. (2007) Revealing cryptic diversity using
molecular phylogenetics and phylogeography in frogs of the Scinax ruber and
Rhinella margaritifera species groups. Molecular Phylogenetics and Evolution, 43,
567-582.
Fraser CI, Thiel M, Spencer HG, Waters JM (2010) Contemporary habitat discontinuity
and historic glacial ice drive genetic divergence in Chilean kelp. BMC Evolutionary
Biology, 10, 203.
Fuentes-Hurtado M, Marin JC, Gonzalez-Acuna D et al. (2011) Molecular divergence
between insular and continental pudu deer (Pudu puda) populations in the Chilean
Patagonia. Studies on Neotropical Fauna and Environment, 46, 23-33.
Garcia G (2006) Multiple simultaneous speciation in killifishes of the Cynolebias
adloffi species complex (Cyprinodontiformes, Rivulidae) from phylogeography and
chromosome data. Journal of Zoological Systematics and Evolutionary Research,
44, 75-87.
Garcia G, Vergara J, Gutierrez V (2008) Phylogeography of the Southwestern Atlantic
menhaden genus Brevoortia (Clupeidae, Alosinae). Marine Biology, 155, 325-336.
Garcia MG, Silva RS, Carniello MA et al. (2011) Molecular evidence of cryptic
speciation, historical range expansion, and recent intraspecific hybridization in the
Neotropical seasonal forest tree Cedrela fissilis (Meliaceae). Molecular
Phylogenetics and Evolution, 61, 639-649.
Geurgas SR, Rodrigues MT (2010) The hidden diversity of Coleodactylus amazonicus
(Sphaerodactylinae, Gekkota) revealed by molecular data. Molecular Phylogenetics
and Evolution, 54, 583-593.
Gonzalez-Ittig RE, Patton JL, Gardenal CN (2007) Analysis of cytochrome-b nucleotide
diversity confirms a recent range expansion in Calomys musculinus (Rodentia,
Muridae). Journal of Mammalogy, 88, 777-783.
Gonzalez-Ittig RE, Rossi-Fraire HJ, Cantoni GE et al. (2010) Population genetic
structure of long-tailed pygmy rice rats (Oligoryzomys longicaudatus) from
Argentina and Chile based on the mitochondrial control region. Canadian Journal
of Zoology - Revue Canadienne de Zoologie, 88, 23-35.
Gonzalez S, Maldonado JE, Leonard JA et al. (1998) Conservation genetics of the
endangered Pampas deer (Ozotoceros bezoarticus). Molecular Ecology, 7, 47-56.
Gonzalez J, Wink M (2010) Genetic differentiation of the Thorn-tailed Rayadito
Aphrastura spinicauda (Furnariidae: Passeriformes) revealed by ISSR profiles
suggests multiple palaeorefugia and high recurrent gene flow. Ibis, 152, 761-774.
Grazziotin FG, Monzel M, Echeverrigaray S, Bonatto SL (2006) Phylogeography of the
Bothrops jararaca complex (Serpentes: Viperidae): past fragmentation and island
colonization in the Brazilian Atlantic Forest. Molecular Ecology, 15, 3969-3982.
Guarnizo CE, Amezquita A, Bermingham E (2009) The relative roles of vicariance
versus elevational gradients in the genetic differentiation of the high Andean tree
frog, Dendropsophus labialis. Molecular Phylogenetics and Evolution, 50, 84-92.
Himes CMT, Gallardo MH, Kenagy GJ (2008) Historical biogeography and post-glacial
recolonization of South American temperate rain forest by the relictual marsupial
Dromiciops gliroides. Journal of Biogeography, 35, 1415-1424.
Hoffmann FG, Baker RJ (2003) Comparative phylogeography of short-tailed bats
(Carollia: Phyllostomidae). Molecular Ecology, 12, 3403-3414.
Hollatz C, Vilaca ST, Redondo RAF et al. (2011) The Amazon river system as an
ecological barrier driving genetic differentiation of the pink dolphin (Inia
geoffrensis). Biological Journal of the Linnean Society, 102, 812–827.
Hubert N, Duponchelle F, Nunez J et al. (2007a) Phylogeography of the piranha genera
Serrasalmus and Pygocentrus: implications for the diversification of the Neotropical
ichthyofauna. Molecular Ecology, 16, 2115-2136.
Hubert N, Duponchelle F, Nunez J et al. (2007b) Isolation by distance and Pleistocene
expansion of the lowland populations of the white piranha Serrasalmus rhombeus.
Molecular Ecology, 16, 2488-2503.
Jakob SS, Martinez-Meyer E, Blattner FR (2009) Phylogeographic analyses and
paleodistribution modeling indicate Pleistocene in situ survival of Hordeum species
(Poaceae) in southern Patagonia without genetic or spatial restriction. Molecular
Biology and Evolution, 26, 907-923.
Johnson WE, Slattery JP, Eizirik E et al. (1999) Disparate phylogeographic patterns of
molecular genetic variation in four closely related South American small cat species.
Molecular Ecology, 8, S79-S94.
Joseph L, Wilke T, Alpers D (2003) Independent evolution of migration on the South
American landscape in a long-distance temperate-tropical migratory bird,
Swainson's flycatcher (Myiarchus swainsoni). Journal of Biogeography, 30, 925937.
Koscinski D, Handford P, Tubaro PL, Sharp S, Lougheed SC (2008) Pleistocene
climatic cycling and diversification of the Andean treefrog, Hypsiboas andinus.
Molecular Ecology, 17, 2012-2025.
Koscinski D, Yates AG, Handford P, Lougheed SC (2009) Effects of landscape and
history on diversification of a montane, stream-breeding amphibian. Journal of
Biogeography, 36, 255-265.
Lara MC, Patton JL (2000) Evolutionary diversification of spiny rats (genus Trinomys,
Rodentia: Echimyidae) in the Atlantic Forest of Brazil. Zoological Journal of the
Linnean Society, 130, 661-686.
Lara-Ruiz P, Chiarello AG, Santos FR (2008) Extreme population divergence and
conservation implications for the rare endangered Atlantic Forest sloth, Bradypus
torquatus (Pilosa: Bradypodidae). Biological Conservation, 141, 1332-1342.
Larsen PA, Hoofer SR, Bozeman MC et al. (2007) Phylogenetics and phylogeography
of the Artibeus jamaicensis complex based on cytochrome-b DNA sequences.
Journal of Mammalogy, 88, 712-727.
Lavergne A, Ruiz-Garcia M, Catzeflis F et al. (2010) Phylogeny and phylogeography of
squirrel monkeys (genus Saimiri) based on cytochrome b genetic analysis. American
Journal of Primatology, 72, 242-253.
Lazoski C, Gusmao J, Boudry P, Sole-Cava AM (2011) Phylogeny and phylogeography
of Atlantic oyster species: evolutionary history, limited genetic connectivity and
isolation by distance. Marine Ecology - Progress Series, 426, 197-212.
Lemes MR, Dick CW, Navarro C et al. (2010) Chloroplast DNA microsatellites reveal
contrasting phylogeographic structure in mahogany (Swietenia macrophylla King,
Meliaceae) from Amazonia and Central America. Tropical Plant Biology, 3, 40-49.
Lessa EP, Cook JA, Patton JL (2003). Genetic footprints of demographic expansion in
North America, but not Amazonia, during the Late Quaternary. Proceedings of the
National Academy of Sciences of the United States of America, 100, 10331-10334.
Lessa EP, D'Elia G, Pardinas UFJ (2010) Genetic footprints of late Quaternary climate
change in the diversity of Patagonian-Fueguian rodents. Molecular Ecology, 19,
3031-3037.
Lira CF, Cardoso SRS, Ferreira PCG, Cardoso MA, Provan J (2003) Long-term
population isolation in the endangered tropical tree species Caesalpinia echinata
Lam. revealed by chloroplast microsatellites. Molecular Ecology, 12, 3219-3225.
Lorenz-Lemke AP, Muschner VC, Bonatto SL et al. (2005) Phylogeographic inferences
concerning evolution of Brazilian Passiflora actinia and P-elegans (Passifloraceae)
based on ITS (nrDNA) variation. Annals of Botany, 95, 799-806.
Lorenz-Lemke AP, Togni PD, Mader G et al. (2010) Diversification of plant species in
a subtropical region of eastern South American highlands: a phylogeographic
perspective on native Petunia (Solanaceae). Molecular Ecology, 19, 5240-5251.
Lougheed SC, Gascon C, Jones DA, Bogart JP, Boag PT (1999) Ridges and rivers: a
test of competing hypotheses of Amazonian diversification using a dart-poison frog
(Epipedobates femoralis). Proceedings of the Royal Society B - Biological Sciences,
266, 1829-1835.
Lovejoy NR, de Araujo MLG (2000) Molecular systematics, biogeography and
population structure of Neotropical freshwater needlefishes of the genus
Potamorrhaphis. Molecular Ecology, 9, 259-268.
Marchelli P, Leonardo G (2006) Multiple ice-age refugia in a southern beech of South
America as evidenced by chloroplast DNA markers. Conservation Genetics, 7, 591603.
Marchelli P, Gallo L, Scholz F, Ziegenhagen B (1998) Chloroplast DNA markers reveal
a geographical divide across Argentinean southern beech Nothofagus nervosa (Phil.)
Dim. et Mil. distribution area. Theoretical and Applied Genetics, 97, 642-646.
Marin JC, Casey CS, Kadwell M et al. (2007) Mitochondrial phylogeography and
demographic history of the Vicuna: implications for conservation. Heredity, 99, 7080.
Marin JC, Spotorno AE, Gonzalez BA et al. (2008) Mitochondrial DNA variation and
systematics of the guanaco (Lama guanicoe, Artiodactyla: Camelidae). Journal of
Mammalogy, 89, 269-281.
Marquez A, Maldonado JE, Gonzalez S et al. (2006) Phylogeography and Pleistocene
demographic history of the endangered marsh deer (Blastocerus dichotomus) from
the Rio de la Plata Basin. Conservation Genetics, 7, 563-575.
Marks BD, Hackett SJ, Capparella AP (2002) Historical relationships among
Neotropical lowland forest areas of endemism as determined by mitochondrial DNA
sequence variation within the Wedge-billed woodcreeper (Aves: Dendrocolaptidae:
Glyphorynchus spirurus). Molecular Phylogenetics and Evolution, 24, 153-167.
Martinez JJ, Gonzalez-Ittig RE, Theiler GR et al. (2010) Patterns of speciation in two
sibling species of Graomys (Rodentia, Cricetidae) based on mtDNA sequences.
Journal of Zoological Systematics and Evolutionary Research, 48, 159-166.
Martins FD, Gifalli-Iughetti C, Koiffman CP, Harris EE (2011) Coalescent analysis of
mtDNA indicates Pleistocene divergence among three species of howler monkey
(Alouatta spp.) and population subdivision within the Atlantic Coastal Forest
species, A. guariba. Primates, 52, 77-87.
Martins FM, Ditchfield AD, Meyer D, Morgante JS (2007) Mitochondrial DNA
phylogeography reveals marked population structure in the common vampire bat,
Desmodus rotundus (Phyllostomidae). Journal of Zoological Systematics and
Evolutionary Research, 45, 372-378.
Martins FM, Templeton AR, Pavan ACO, Kohlbach BC, Morgante JS (2009)
Phylogeography of the common vampire bat (Desmodus rotundus): Marked
population structure, Neotropical Pleistocene vicariance and incongruence between
nuclear and mtDNA markers. BMC Evolutionary Biology, 9,294.
Masello JF, Quillfeldt P, Munimanda GK et al. (2011) The high Andes, gene flow and a
stable hybrid zone shape the genetic structure of a wide-ranging South American
parrot. Frontiers in Zoology, 8, 16.
Mathiasen P, Premoli AC (2010) Out in the cold: genetic variation of Nothofagus
pumilio (Nothofagaceae) provides evidence for latitudinally distinct evolutionary
histories in austral South America. Molecular Ecology, 19, 371-385.
Mavarez J, Steiner C, Pointier JP, Jarne P (2002) Evolutionary history and
phylogeography of the schistosome-vector freshwater snail Biomphalaria glabrata
based on nuclear and mitochondrial DNA sequences. Heredity, 89, 266-272.
Mila B, Wayne RK, Fitze P, Smith TB (2009) Divergence with gene flow and fine-scale
phylogeographical structure in the wedge-billed woodcreeper, Glyphorynchus
spirurus, a Neotropical rainforest bird. Molecular Ecology, 18, 2979-2995.
Mirabello L, Conn JE (2006) Molecular population genetics of the malaria vector
Anopheles darlingi in Central and South America. Heredity, 96, 311-321.
Mirabello L, Conn JE (2008) Population analysis using the nuclear white gene detects
Pliocene/Pleistocene lineage divergence within Anopheles nuneztovari in South
America. Medical and Veterinary Entomology, 22, 109-119.
Miranda GB, Oliveira LFB, Andrades-Miranda J et al. (2009) Phylogenetic and
phylogeographic patterns in Sigmodontine rodents of the genus Oligoryzomys.
Journal of Heredity, 100, 309-321.
Monteiro FA, Barrett TV, Fitzpatrick S et al. (2003) Molecular phylogeography of the
Amazonian Chagas disease vectors Rhodnius prolixus and R. robustus. Molecular
Ecology, 12, 997-1006.
Monteiro FA, Donnelly MJ, Beard CB, Costa J (2004) Nested clade and
phylogeographic analyses of the Chagas disease vector Triatoma brasiliensis in
Northeast Brazil. Molecular Phylogenetics and Evolution, 32, 46-56.
Montes MA, Oliveira LFB, Bonatto SL, Callegari-Jacques SM, Mattevi MS (2008)
DNA sequence analysis and the phylogeographical history of the rodent Deltamys
kempi (Sigmodontinae, Cricetidae) on the Atlantic Coastal Plain of south of Brazil.
Journal of Evolutionary Biology, 21, 1823-1835.
Moraes EM, Yotoko KSC, Manfrin MH, Solferini VN, Sene FM (2009)
Phylogeography of the cactophilic species Drosophila gouveai: demographic events
and divergence timing in dry vegetation enclaves in eastern Brazil. Journal of
Biogeography, 36, 2136-2147.
Morando M, Avila LJ, Baker J, Sites JW (2004) Phylogeny and phylogeography of the
Liolaemus darwinii complex (Squamata : Liolaemidae): Evidence for introgression
and incomplete lineage sorting. Evolution, 58, 842-861.
Morando M, Avila LJ, Turner C, Sites JW (2008) Phylogeography between valleys and
mountains: the history of populations of Liolaemus koslowskyi (Squamata,
Liolaemini). Zoologica Scripta, 37, 603-618.
Morando M, Avila LJ, Turner CR, Sites JW (2007) Molecular evidence for a species
complex in the patagonian lizard Liolaemus bibronii and phylogeography of the
closely related Liolaemus gracilis (Squamata : Liolaemini). Molecular
Phylogenetics and Evolution, 43, 952-973.
Muellner AN, Tremetsberger K, Stuessy T, Baeza CM (2005) Pleistocene refugia and
recolonization routes in the southern Andes: insights from Hypochaeris palustris
(Asteraceae, Lactuceae). Molecular Ecology, 14, 203-212.
Noonan BP, Gaucher P (2005) Phylogeography and demography of Guianan harlequin
toads (Atelopus): diversification within a refuge. Molecular Ecology, 14, 3017-3031.
Noonan BP, Gaucher P (2006) Refugial isolation and secondary contact in the dyeing
poison frog Dendrobates tinctorius. Molecular Ecology, 15, 4425-4435.
Novaes RML, De Lemos JP, Ribeiro RA, Lovato MB (2010) Phylogeography of
Plathymenia reticulata (Leguminosae) reveals patterns of recent range expansion
towards northeastern Brazil and southern Cerrados in Eastern Tropical South
America. Molecular Ecology, 19, 985-998.
Nunez JJ, Wood NK, Rabanal FE, Fontanella FM, Sites JW (2011) Amphibian
phylogeography in the Antipodes: Refugia and postglacial colonization explain
mitochondrial haplotype distribution in the Patagonian frog Eupsophus calcaratus
(Cycloramphidae). Molecular Phylogenetics and Evolution, 58, 343-352.
Ojeda AA (2010) Phylogeography and genetic variation in the South American rodent
Tympanoctomys barrerae (Rodentia: Octodontidae). Journal of Mammalogy, 91,
302-313.
Olsen KM (2002) Population history of Manihot esculenta (Euphorbiaceae) inferred
from nuclear DNA sequences. Molecular Ecology, 11, 901-911.
Opazo JC, Bugueno MP, Carter MJ, Palma RE, Bozinovic F (2008) Phylogeography of
the subterranean rodent Spalacopus cyanus (Caviomorpha, Octodontidae). Journal
of Mammalogy, 89, 837-844.
Palma-Silva C, Lexer C, Paggi GM et al. (2009) Range-wide patterns of nuclear and
chloroplast DNA diversity in Vriesea gigantea (Bromeliaceae), a neotropical forest
species. Heredity, 103, 503-512.
Palma RE, Marquet PA, Boric-Bargetto D (2005a) Inter- and intraspecific
phylogeography of small mammals in the Atacama desert and adjacent areas of
northern Chile. Journal of Biogeography, 32, 1931-1941.
Palma RE, Rivera-Milla E, Salazar-Bravo J et al. (2005b) Phylogeography of
Oligoryzomys longicaudatus (Rodentia : Sigmodontinae) in temperate South
America. Journal of Mammalogy, 86, 191-200.
Papadopoulou A, Jones AG, Hammond PM, Vogler AP (2009) DNA taxonomy and
phylogeography of beetles of the Falkland Islands (Islas Malvinas). Molecular
Phylogenetics and Evolution, 53, 935-947.
Patton JL, Dasilva MNF, Malcolm JR (1994) Gene genealogy and differentiation
among arboreal spiny rats (Rodentia: Echimyidae) of the Amazon basin: A test of
the riverine barrier hypothesis. Evolution, 48, 1314-1323.
Pavan AC, Martins F, Santos FR, Ditchfield A, Redondo RAF (2011) Patterns of
diversification in two species of short-tailed bats (Carollia Gray, 1838): the effects
of historical fragmentation of Brazilian rainforests. Biological Journal of the
Linnean Society, 102, 527-539.
Pearse DE, Arndt AD, Valenzuela N et al. (2006) Estimating population structure under
nonequilibrium conditions in a conservation context: continent-wide population
genetics of the giant Amazon river turtle, Podocnemis expansa (Chelonia;
Podocnemididae). Molecular Ecology, 15, 985-1006.
Pedro PM, Sallum MAM (2009) Spatial expansion and population structure of the
neotropical malaria vector, Anopheles darlingi (Diptera: Culicidae). Biological
Journal of the Linnean Society, 97, 854-866.
Pedro PM, Uezu A, Sallum MAM (2010) Concordant phylogeographies of two Malaria
vectors attest to common spatial and demographic histories. Journal of Heredity,
101, 618-627.
Pellegrino KCM, Rodrigues MI, Waite AN et al. (2005) Phylogeography and species
limits in the Gymnodactylus darwinii complex (Gekkonidae, Squamata): genetic
structure coincides with river systems in the Brazilian Atlantic Forest. Biological
Journal of the Linnean Society, 85, 13-26.
Pereyra S, Garcia G (2008) Patterns of genetic differentiation in the Gymnogeophagus
gymnogenys species complex, a neotropical cichlid from South American basins.
Environmental Biology of Fishes, 83, 245-257.
Pereyra S, Garcia G, Miller P, Oviedo S, Domingo A (2010) Low genetic diversity and
population structure of the narrownose shark (Mustelus schmitti). Fisheries
Research, 106, 468-473.
Picard D, Sempere T, Plantard O (2008) Direction and timing of uplift propagation in
the Peruvian Andes deduced from molecular phylogenetics of highland biotaxa.
Earth and Planetary Science Letters, 271, 326-336.
Piccinali RV, Canale DM, Sandoval AE et al. (2010) Triatoma infestans bugs in
Southern Patagonia, Argentina. Emerging Infectious Diseases, 16, 887-889.
Piccinali RV, Marcet PL, Noireau F et al. (2009) Molecular population genetics and
phylogeography of the Chagas Disease vector Triatoma infestans in South America.
Journal of Medical Entomology, 46, 796-809.
Pickles RSA, Groombridge JJ, Zambrana Rojas VD et al. (2011) Evolutionary history
and identification of conservation units in the giant otter, Pteronura brasiliensis.
Molecular Phylogenetics and Evolution, 61, 616-627.
Pinheiro F, Barros F, Palma-Silva C et al. (2011) Phylogeography and genetic
differentiation along the distributional range of the orchid Epidendrum fulgens: a
Neotropical coastal species not restricted to glacial refugia. Journal of
Biogeography, 38, 1923-1935.
Poljak S, Confalonieri V, Fasanella M, Gabrielli M, Lizarralde MS (2010)
Phylogeography of the armadillo Chaetophractus villosus (Dasypodidae Xenarthra):
post-glacial range expansion from Pampas to Patagonia (Argentina). Molecular
Phylogenetics and Evolution, 55, 38-46.
Prodocimo V, Tscha MK, Pie MR et al. (2008) Lack of genetic differentiation in the fat
snook Centropomus parallelus (Teleostei: Centropomidae) along the Brazilian
coast. Journal of Fish Biology, 73, 2075-2082.
Puorto G, Salomao MD, Theakston RDG et al. (2001) Combining mitochondrial DNA
sequences and morphological data to infer species boundaries: phylogeography of
lanceheaded pitvipers in the Brazilian Atlantic forest, and the status of Bothrops
pradoi (Squamata: Serpentes: Viperidae). Journal of Evolutionary Biology, 14, 527538.
Quijada-Mascarenas JA, Ferguson JE, Pook CE et al. (2007) Phylogeographic patterns
of trans-Amazonian vicariants and Amazonian biogeography: the Neotropical
rattlesnake (Crotalus durissus complex) as an example. Journal of Biogeography,
34, 1296-1312.
Ramos ACS, De Lemos-Filho JP, Lovato MB (2009) Phylogeographical structure of the
neotropical forest tree Hymenaea courbaril (Leguminosae: Caesalpinioideae) and its
relationship with the vicariant Hymenaea stigonocarpa from Cerrado. Journal of
Heredity, 100, 206-216.
Ramos ACS, Lemos-Filho JP, Ribeiro RA, Santos FR, Lovato MB (2007)
Phylogeography of the tree Hymenaea stigonocarpa (Fabaceae : Caesalpinioideae)
and the influence of quaternary climate changes in the Brazilian cerrado. Annals of
Botany, 100, 1219-1228.
Reis EC, Soares LS, Vargas SM et al. (2010) Genetic composition, population structure
and phylogeography of the loggerhead sea turtle: colonization hypothesis for the
Brazilian rookeries. Conservation Genetics, 11, 1467-1477.
Resende HC, Yotoko KSC, Delabie JHC et al. (2010) Pliocene and Pleistocene events
shaping the genetic diversity within the central corridor of the Brazilian Atlantic
Forest. Biological Journal of the Linnean Society, 101, 949-960.
Ribeiro RA, Lemos JP, Ramos ACS, Lovato MB (2011) Phylogeography of the
endangered rosewood Dalbergia nigra (Fabaceae): insights into the evolutionary
history and conservation of the Brazilian Atlantic Forest. Heredity, 106, 46-57.
Rodriguez-Serrano E, Cancino RA, Palma RE (2006) Molecular phylogeography of
Abrothrix olivaceus (Rodentia : Sigmodontinae) in Chile. Journal of Mammalogy,
87, 971-980.
Rosa S, Milinkovitch MC, Van Waerebeek K et al. (2005) Population structure of
nuclear and mitochondrial DNA variation among South American Burmeister's
porpoises (Phocoena spinipinnis). Conservation Genetics, 6, 431-443.
Ruiz-Garcia M, Castillo MI, Vasquez C et al. (2010) Molecular phylogenetics and
phylogeography of the white-fronted capuchin (Cebus albifrons; Cebidae, Primates)
by means of mtCOII gene sequences. Molecular Phylogenetics and Evolution, 57,
1049-1061.
Ruzzante DE, Walde SJ, Cussac VE et al. (2006) Phylogeography of the Percichthyidae
(Pisces) in Patagonia: roles of orogeny, glaciation, and volcanism. Molecular
Ecology, 15, 2949-2968.
Ruzzante DE, Walde SJ, Gosse JC et al. (2008) Climate control on ancestral population
dynamics: insight from patagonian fish phylogeography. Molecular Ecology, 17,
2234–2244.
Ruzzante DE, Walde S, Macchi P, Alonso M, Barriga J (2011) Phylogeography and
phenotypic diversification in the Patagonian fish Percichthys trucha: the roles of
Quaternary glacial cycles and natural selection. Biological Journal of the Linnean
Society, 103, 514–529.
Sallaberry-Pincheira N, Garin CF, Gonzalez-Acuna D, Sallaberry MA, Vianna JA
(2011) Genetic divergence of chilean long-tailed snake (Philodryas chamissonis)
across latitudes: conservation threats for different lineages. Diversity and
Distributions, 17, 152-162.
Sanin C, Daniel Cadena C, Maley JM et al. (2009) Paraphyly of Cinclodes fuscus
(Aves: Passeriformes: Furnariidae): implications for taxonomy and biogeography.
Molecular Phylogenetics and Evolution, 53, 547-555.
Santos S, Schneider H, Sampaio I (2003) Genetic differentiation of Macrodon
ancylodon (Sciaenidae, Perciformes) populations in Atlantic coastal waters of South
America as revealed by mtDNA analysis. Genetics and Molecular Biology, 26, 151161.
Santos S, Hrbek T, Farias IP, Schneider H, Sampaio I (2006) Population genetic
structuring of the king weakfish, Macrodon ancylodon (Sciaenidae), in Atlantic
coastal waters of South America: deep genetic divergence without morphological
change. Molecular Ecology, 15, 4361-4373.
Sarno RJ, Villalba L, Bonacic C et al. (2004) Phylogeography and subspecies
assessment of vicunas in Chile and Bolivia utilizing mtDNA and microsatellite
markers: implications for vicuna conservation and management. Conservation
Genetics, 5, 89-102.
Scarpassa VM, Cardoza TB, Cardoso RP (2008) Population genetics and
phylogeography of Aedes aegipti (Diptera : Culicidae) from Brazil. American
Journal of Tropical Medicine and Hygiene, 78, 895-903.
Sistrom MJ, Chao NL, Beheregaray LB (2009) Population history of the Amazonian
one-lined pencilfish based on intron DNA data. Journal of Zoology, 278, 287-298.
Slade RW, Moritz C (1998) Phylogeography of Bufo marinus from its natural and
introduced ranges. Proceedings of the Royal Society of London Series B - Biological
Sciences, 265, 769-777.
Solomon SE, Bacci MJr, Martins JJr, Vinha GG, Mueller UG (2008) Paleodistributions
and comparative molecular phylogeography of leafcutter ants (Atta spp.) provide
new insight into the origins of Amazonian diversity. Plos One, 3, e2738.
Souto CP, Premoli AC (2007) Genetic variation in the widespread Embothrium
coccineum (Proteaceae) endemic to Patagonia: effects of phylogeny and historical
events. Australian Journal of Botany, 55, 809-817.
Souza FL, Cunha AF, Oliveira MA, Pereira GAG, Dos Reis SF (2003) Preliminary
phylogeographic analysis of the neotropical freshwater turtle Hydromedusa
maximiliani (Chelidae). Journal of Herpetology, 37, 427-433.
Speranza PR, Seijo JG, Grela IA, Neffa VGS (2007) Chloroplast DNA variation in the
Turnera sidoides L. complex (Turneraceae): biogeographical implications. Journal
of Biogeography, 34, 427-436.
Stefenon VN, Behling H, Gailing O, Finkeldey R (2008) Evidences of delayed size
recovery in Araucaria angustifolia populations after post-glacial colonization of
highlands in Southeastern Brazil. Anais da Academia Brasileira de Ciencias, 80,
433-443.
Steiner C, Catzeflis FM (2004) Genetic variation and geographical structure of five
mouse-sized opossums (Marsupialia, Didelphidae) throughout the Guiana region.
Journal of Biogeography, 31, 959-973.
Tchaicka L, Eizirik E, De Oliveira TG, Candido JF, Freitas TRO (2007)
Phylogeography and population history of the crab-eating fox (Cerdocyon thous).
Molecular Ecology, 16, 819-838.
Tellier F, Meynard AP, Correa JA, Faugeron S, Valero M (2009) Phylogeographic
analyses of the 30 degrees S south-east Pacific biogeographic transition zone
establish the occurrence of a sharp genetic discontinuity in the kelp Lessonia
nigrescens: vicariance or parapatry? Molecular Phylogenetics and Evolution, 53,
679-693.
Thome MTC, Zamudio KR, Giovanelli JGR et al. (2010) Phylogeography of endemic
toads and post-Pliocene persistence of the Brazilian Atlantic Forest. Molecular
Phylogenetics and Evolution, 55, 1018-1031.
Torres RA, Ribeiro J (2009) The remarkable species complex Mimagoniates microlepis
(Characiformes: Glandulocaudinae) from the Southern Atlantic Rain forest (Brazil)
as revealed by molecular systematic and population genetic analyses.
Hydrobiologia, 617, 157-170.
Torres-Perez F, Lamborot M, Boric-Bargetto D et al. (2007) Phylogeography of a
mountain lizard species: an ancient fragmentation process mediated by riverine
barriers in the Liolaemus monticola complex (Sauria : Liolaemidae). Journal of
Zoological Systematics and Evolutionary Research, 45, 72-81.
Torres-Perez F, Acuna-Retamar M, Cook JA et al. (2011) Statistical phylogeography of
Chagas disease vector Triatoma infestans: Testing biogeographic hypotheses of
dispersal. Infection Genetics and Evolution, 11, 167-174.
Tremetsberger K, Urtubey E, Terrab A et al. (2009) Pleistocene refugia and polytopic
replacement of diploids by tetraploids in the Patagonian and Subantarctic plant
Hypochaeris incana (Asteraceae, Cichorieae). Molecular Ecology, 18, 3668-3682.
Trenel P, Hansen MM, Normand S, Borchsenius F (2008) Landscape genetics,
historical isolation and cross-Andean gene flow in the wax palm, Ceroxylon
echinulatum (Arecaceae). Molecular Ecology, 17, 3528-3540.
Tunez JI, Cappozzo HL, Nardelli M, Cassini MH (2010) Population genetic structure
and historical population dynamics of the South American sea lion, Otaria
flavescens, in north-central Patagonia. Genetica, 138, 831-841.
Turner TF, McPhee MV, Campbell P, Winemiller KO (2004) Phylogeography and
intraspecific genetic variation of prochilodontid fishes endemic to rivers of northern
South America. Journal of Fish Biology, 64, 186-201.
Unmack PJ, Bennin AP, Habit EM, Victoriano PF, Johnson JB (2009) Impact of ocean
barriers, topography, and glaciation on the phylogeography of the catfish
Trichomycterus areolatus (Teleostei: Trichomycteridae) in Chile. Biological
Journal of the Linnean Society, 97, 876-892.
Van Vuuren BJ, Kinet S, Chopelet J, Catzeflis F (2004) Geographic patterns of genetic
variation in four Neotropical rodents: conservation implications for small game
mammals in French Guiana. Biological Journal of the Linnean Society, 81, 203-218.
Vasconcelos WR, Hrbek T, Da Silveira R et al. (2006) Population genetic analysis of
Caiman crocodilus (Linnaeus, 1758) from South America. Genetics and Molecular
Biology, 29, 220-230.
Vasconcelos WR, Hrbek T, Da Silveira R et al. (2008) Phylogeographic and
conservation genetic analysis of the black caiman (Melanosuchus niger). Journal of
Experimental Zoology Part a-Ecological Genetics and Physiology, 309, 600-613.
Vergara J, Azpelicueta MdlM, Garcia G (2008) Phylogeography of the Neotropical
catfish Pimelodus albicans (Siluriformes: Pimelodidae) from rio de la Plata basin,
South America, and conservation remarks. Neotropical Ichthyology, 6, 75-85.
Vianna JA, Ayerdi P, Medina-Vogel G et al. (2010) Phylogeography of the marine otter
(Lontra felina): historical and contemporary factors determining its distribution.
Journal of Heredity, 101, 676-689.
Vianna JA, Medina-Vogel G, Chehebar C et al. (2011) Phylogeography of the
Patagonian otter Lontra provocax: adaptive divergence to marine habitat or
signature of southern glacial refugia? BMC Evolutionary Biology, 11, 53.
Victoriano PF, Ortiz JC, Benavides E, Adams BJ, Sites JW (2008) Comparative
phylogeography of codistributed species of Chilean Liolaemus (Squamata :
Tropiduridae) from the central-southern Andean range. Molecular Ecology, 17,
2397-2416.
Vidal-Russell R, Souto CP, Premoli AC (2011). Multiple Pleistocene refugia in the
widespread Patagonian tree Embothrium coccineum (Proteaceae). Australian
Journal of Botany, 59, 299-314.
Walter RP, Blum MJ, Snider SB et al. (2011) Isolation and differentiation of Rivulus
hartii across Trinidad and neighboring islands. Molecular Ecology, 20, 601-618.
Willis SC, Nunes M, Montana CG et al. (2010) The Casiquiare river acts as a corridor
between the Amazonas and Orinoco river basins: biogeographic analysis of the
genus Cichla. Molecular Ecology, 19, 1014-1030.
Wuster W, Ferguson JE, Quijada-Mascarenas JA et al. (2005) Tracing an invasion:
landbridges, refugia, and the phylogeography of the Neotropical rattlesnake
(Serpentes: Viperidae: Crotalus durissus). Molecular Ecology, 14, 1095-1108.
Xu JW, Perez-Losada M, Jara CG, Crandall KA (2009) Pleistocene glaciation leaves
deep signature on the freshwater crab Aegla alacalufi in Chilean Patagonia.
Molecular Ecology, 18, 904-918.
Yoke MM, Morando M, Avila LJ, Sites JW (2006) Phylogeography and genetic
structure in the Cnemidophorus longicauda complex (Squamata, Teiidae).
Herpetologica, 62, 420-434.
Zakas C, Binford J, Navarrete SA, Wares JP (2009) Restricted gene flow in Chilean
barnacles reflects an oceanographic and biogeographic transition zone. Marine
Ecology - Progress Series, 394, 165-177.
Zamudio KR, Greene HW (1997) Phylogeography of the bushmaster (Lachesis muta:
Viperidae): implications for neotropical biogeography, systematics, and
conservation. Biological Journal of the Linnean Society, 62, 421-442.
Zemlak TS, Habit EM, Walde SJ et al. (2008) Across the southern Andes on fin: glacial
refugia, drainage reversals and a secondary contact zone revealed by the
phylogeographical signal of Galaxias platei in Patagonia. Molecular Ecology, 17,
5049-5061.
Zemlak TS, Habit EM, Walde SJ, Carrea C, Ruzzante DE (2010) Surviving historical
Patagonian landscapes and climate: molecular insights from Galaxias maculatus.
BMC Evolutionary Biology, 10, 67.
Zemlak TS, Walde SJ, Habit EM, Ruzzante DE (2011) Climate-induced changes to the
ancestral population size of two Patagonian galaxiids: the influence of glacial
cycling. Molecular Ecology, 20, 5280-5294.