1 Annotated references for inclusion with web version of the review Arai KM, Takahashi R, Yokote Y, Akahane K (1986) The primary structure of feather keratin from duck (Anas platyrhynchos) and pigeon (Columba livia). Biochim Biophys Acta 873: 6-12 The amino acid sequences from duck and pigeon feather keratins are provided Astbury WT, Marwick TC (1932) X-ray interpretation of the molecular structure of feather keratin. Nature (London) 130: 309-310 The earliest structural research on feather keratin was carried out by Astbury and colleagues at Leeds, and this paper helped establish the field Astbury WT, Woods HJ (1933) X-ray studies on the structure of hair, wool and related fibres II: the molecular structure and elastic properties of hair keratin. Phil Trans Roy Soc A232: 333-394 Chains in the -form were shown to pack in antiparallel sheets with three-dimensional regularity Astbury WT, Dickson S, Bailey K (1935) The X-ray interpretation of denaturation and the structure of the seed globulins. Biochem J 29: 2351-2360 The cross- conformation was initially proposed on X-ray data derived from denatured globular proteins. In the cross- structure the chains are oriented perpendicular to the fibre axis Alibardi L, Dalla Valle L, Nardi, A et al (2008) Evolution of hard proteins in sauropsid integument in relation to cornification of skin derivatives in amniotes. J Anat (in press) The distribution and variability of the residues in the conserved region of all -keratins has been analysed Bear RS, Rugo HJ (1951) The results of X-ray diffraction studies on keratin fibers. Ann NY Acad Sci 53: 627-648. 2 Understanding the X-ray diffraction pattern from feather keratin was greatly assisted by destroying the longitudinal and rotational correlation between filaments using mechanical treatments. Chothia C, Janin J (1981) Relative orientation of close-packed β-pleated sheets in proteins. Proc Natl Acad Sci 78:4146-4150 When β-pleated sheets pack face-to-face the angle between the strand directions is generally about -30º Conway JK, Parry DAD (1988) Intermediate filament structure 3. Analysis of sequence homologies. Int J Biol Macromol 10: 79-98 A study of the sequences of all intermediate filament chains illustrates the conserved and repeating sequences that are present. Amongst the quasi-repeats is the apolar-X sequence repeated four times consecutively in linker L12 Dalla Valle L, Nardi A, Gelmi C et al (2008) -keratins of the crocodilian epidermis: composition, structure, and phylogenetic relationships. J Exp Zool 310B: 1-16 The amino acid sequences of crocodile -keratins have been determined, analysed and compared with other members of the feather keratin-like family Dalla Valle L, Nardi A, Toni M et al (2009) Beta-keratins of turtle shell are glycineproline-tyrosine rich proteins similar to those of crocodilians and birds. J Anat (in press) A large number of turtle shell -keratin sequences are reported. Each contains a common 32-residue sequence believed to form the -sheet core of the feather keratin-like filaments Filshie BK, Fraser RDB, MacRae TP et al (1964) X-ray diffraction and electronmicroscope observations on soluble derivatives of feather keratin. Biochem J 92: 19 A cross- conformation was observed using X-ray data obtained from oriented films of solubilised feather keratin. Electron microscope observations showed filaments about 4 3 nm in diameter that were twisted around one another in pairs and assembled into sheets. The filaments can be considered as amyloid-like. Filshie BK, Rogers GE (1962) An electron microscope study of the fine structure of feather keratin. J Cell Biol 13: 1-12 This work still represents some of the most detailed electron microscope observations available for feather keratin. These show approximately circular filaments about 3-4 nm in diameter Fraser RDB, MacRae TP (1963) Structural organization in feather keratin. J Mol Biol 7: 272-280 Improved methods of destroying the longitudinal and rotational correlation between filaments by mechanical treatment resulted in a simplified X-ray pattern characteristic of a helical structure Fraser RDB, MacRae TP (1973) Conformation in Fibrous Proteins and Related Synthetic Polypeptides. Academic, New York At the time this was the most comprehensive compilation of data available on both fibrous proteins and the methodology used to study them. It still provides an excellent summary on the structures of many of the synthetic polypeptides that were used as model protein systems. This includes those giving rise to a cross-β conformation Fraser RDB, MacRae TP (1976) The molecular structure of feather keratin. Proc 16th Int Ornith Congress, Canberra, pp 443-451 A further refinement of the feather keratin model presented five years earlier in which strands and -turns have been identified in a 32-residue segment of sequence Fraser RDB, Parry DAD (1996) The molecular structure of reptilian keratin. Int J Biol Macromol 19: 207-211 The analysis of a lizard claw protein reveals the common structural features of the filaments in avian and reptilian keratins 4 Fraser RDB, Parry DAD (2008) Molecular packing in the feather keratin filament. J Struct Biol 162: 1-13 This is the latest and most comprehensive model yet derived for the core of the feather keratin filament. It shows close packing, facilitated by predominately apolar interactions, between twisted, antiparallel -sheets. A highly conserved 32-residue sequence exists across the entire family of feather keratin-like proteins and is postulated to provide a four-stranded antiparallel -sheet structure Fraser RDB, MacRae TP, Parry DAD et al (1969) The structure of -keratin. Polymer 10: 810-826 Analysis of X-ray diffraction patterns from hard -keratin subjected to stretching in steam revealed a planar, antiparallel -sheet conformation Fraser RDB, MacRae TP, Parry DAD et al (1971) The structure of feather keratin. Polymer 12: 35-56 This paper reported the first detailed model of feather keratin. It accounted for the simplified X-ray diffraction pattern in terms of twisted -sheets, a unique structural form at that time Gillespie JM (1990) The proteins of hair and other hard -keratins. In Goldman RD, Steinert PM (eds) Cellular and molecular biology of intermediate filaments, Plenum Press: New York-London, pp 95-128 A detailed description is provided of the various families of proteins that together constitute the mammalian hard -keratins Gregg K, Wilton SD, Parry DAD et al (1984) A comparison of genomic sequences for feather and scale keratins: structural and evolutionary implications. EMBO J 3:175-178 The key difference between the sequences of feather and scale keratins is shown to reside in the presence in scale but not in feather of a four-fold 13-residue repeat thought to adopt an antiparallel -sheet conformation 5 Inglis A, Gillespie JM, Roxburgh C, Whittaker L and Casagranda F (1987) Sequence of a glycine-rich protein from lizard claw: unusual dilute acid and heptafluorobutyric acid cleavage. In L’Italien (ed) Protein, structure and function, Plenum Press: New YorkLondon, pp 757-764 The first reptilian keratin to be sequenced was from a lizard claw and the sequence showed similarities to those from feather keratins Kajava AV, Squire JM, Parry DAD (2006) -Structures in fibrous proteins. Adv Prot Chem 73: 1-15 Variants of the classical -structures – the -solenoid, the triple-stranded -solenoid, the cross -prism, the triple -spiral and the spiral -hairpin staircase – are all described Kamiya H, Ishii C, Ogawa T et al (2002) Crystal structure of a conger eel galectin congerin II at 1.45Å resolution: implication for the accelerated evolution of a new ligandbinding site following gene duplication J Mol Biol 321: 879-889 The pair of twisted -sheets seen in Congerin II are believed to be packed in a manner closely analogous to that in feather keratin Marwick TC (1931) The X-ray classification of epidermal proteins. J Text Sci 4, 31-33 This is now mainly of historical interest but it does provide some of the earliest X-ray data available on feather keratin and indicates an extended structure commonly referred to as the -strand O'Donnell IJ (1973) The complete amino acid sequence of a feather keratin from emu (Dromanus novae-hollandiae) Aust J Biol Sci 26: 415-437 This is the first amino acid sequence from a feather keratin protein (emu). Feather was also shown to contain only a single protein component compared with mammalian keratins which contain three families of proteins each with multiple components 6 O’Donnell IJ, Inglis AS (1974) Amino acid sequence of a feather keratin from silver gull (Larus Novae-Hollandiae) and comparison with one from emu (Dromaius NovaHollandiae) Aust J Biol Sci 27: 369-382 The sequence of a second feather keratin protein (seagull) is compared with that from emu Parker KD, Rudall KM (1957) Structure of the silk of chrysopa egg-stalks. Nature (London) 179: 905-906 This describes the cross-β-conformation from a naturally-occurring material - the egg stalk from the green lacewing fly Parry DAD, Fraser RDB (1985) Intermediate filament structure 1. Analysis of IF protein sequence data. Int J Biol Macromol 7: 203-213 A central linker in keratin intermediate filament chains (linker L12) has a four consecutive dipeptide repeats with apolar residues in alternate positions. The possibility that this might form a short length of -structure has been suggested Parry DAD, North ACT (1998) Hard -keratin intermediate filament chains: substructure of the N- and C-terminal domains and the predicted structure and function of the Cterminal domains of type I and II chains. J Struct Biol 122: 67-75 The sequence immediately C-terminal to the rod domain in keratin intermediate filament chains is predicted to form a four-stranded antiparallel pleated -sheet. One face would be largely composed of apolar residues Parry DAD, Marekov LN, Steinert PM et al (2002) A role for the 1A and L1 rod domain segments in head domain organization and function of intermediate filaments: Structural analysis of trichocyte keratin. J Struct Biol 137: 97-108 The head domains of trichocyte keratin Type II intermediate filament chains contain four contiguous (imperfect but highly homologous) nonapeptide repeats that are predicted to form a four-stranded antiparallel -sheet. This region may interact with the equivalent 7 region in a head domain from a neighbouring filament thereby specifying interfilament interactions Pauling L, Corey RB (1951). The pleated sheet, a new layer configuration of polypeptide chains. Proc Natl Acad Sci USA 37: 251-256 This provided the first detailed description of the element of secondary structure known as the -strand. It also provided a model of how these could be packed to form an antiparallel sheet-like structure stabilized by hydrogen bonds. Presland RB, Gregg K, Molloy PL et al (1989) Avian keratin genes. I. A molecular analysis of the structure and expression of a group of feather keratin genes. J Mol Biol 209: 549-559 This paper reports the amino acid sequence of chicken feather keratin Richardson JS, Richardson DC (2002). Natural β-sheet proteins use negative design to avoid edge-to-edge aggregation. Proc Natl Acad Sci USA 99: 2754-2760 Unwanted edge-to-edge aggregation of β-sheets can be prevented by the presence of particular amino acids, often charged ones, in either the first or last β-strands Rougvie MA (1954). Ph.D. Thesis, Massachusetts Institute of Technology Feather keratin was solubilised by cleaving the disulphide bonds. Following chemical modification of the cysteine residues the material was made into oriented films. X-ray diffraction studies on this material indicated a filamentous structure similar to that present in vivo Sawyer RH, Washington LD, Salvatore BA et al (2003) Origin of archosaurian integumentary appendages: the bristles of the wild turkey beard express feather-type keratins. J Exp Zool (Mol Dev Evol) 297B: 27-34 The turkey vulture bristle sequence is shown to have strong similarities to feather keratin in a 30-40 residue region 8 Schor R, Krimm S (1961) Studies on the structure of feather keratin II. A -helix model for the structure of feather keratin. Biophys J 1: 489-515 This provides an early model for feather keratin based around the presence of -strands Stewart M (1977) The structure of chicken scale keratin. J Ultrastruct Res 60:27-33 X-ray diffraction studies on the unique 52-residue sequence (the four-fold 13-residue motif) present in scale but not in feather keratin indicates a β-conformation Toni M, Dalla Valle L, Alibardi L. (2007a) The epidermis of scales in gecko lizards contains multiple forms of -keratins including basic glycine-proline-serine-rich proteins. J Proteome Res 6: 1792-1805 The sequences of β-keratins from gecko skin are listed and analysed Toni M, Dalla Valle L, Alibardi L. (2007b) Hard (-) keratins in the epidermis of reptiles: Composition, sequence, and molecular organization. J Proteome Res 6: 33773392 The sequences of some snake and lizard skin β-keratins are presented and analysed Walker ID, Bridgen J (1976) The keratin chains of avian scale tissue. J Biochem 67: 283293 The amino acid sequence of chicken scale keratin is reported Whitbread LA, Gregg K, Rogers GE (1991) The structure and expression of a gene encoding chick claw keratin. Gene, 101: 223-229 The amino acid sequence of chicken claw keratin is reported