Journal of Biogeography SUPPORTING INFORMATION Patterns of rain forest plant endemism in subtropical Australia relate to stable mesic refugia and species dispersal limitations Lui C. Weber, Jeremy VanDerWal, Susanne Schmidt, William J. F. McDonald and Luke P. Shoo APPENDIX S3 Testing independence of variables, the mid-domain effect and subregional richness, and evidence of relict and isolated endemic taxa in rain forests of subtropical eastern Australia. We tested for excessive correlations between independent variables that could negatively impact the reliability of multiple regressions. Pairwise Spearman’s rho correlations were calculated for isolated forest patches in the R software package as outlined in Materials and Methods. The results are presented in Table S3.1. We tested for inflation of richness in endemic taxa in subregions simply because this subregion is near centre of the study area (a mid-domain effect). The subregional richness of endemic plant taxa was recalculated after excluding species that occur north and then south of the border ranges which is the central subregion with the highest richness, see Table S3.2. We examined what portion of endemic rain forest plant lineages may have persisted in long term refugia in subtropical Australia rather than being endemic as a result of more recent dispersal and speciation events. A literature review was undertaken for flora species, genera and families endemic to the study area by compiling published fossil, biogeographical and phylogenetic evidence for the history of these plant groups, in Australia and elsewhere. Details of plant lineages likely to be more relict and geographically and phylogenetically isolated are provided in Table S3.1. Table S3.1 Pairwise correlations between independent variables (Spearman’s rho) for isolated forest patches. Log area Elevation SD Log max rainfall Max stability Log area 1.000 0.593 0.129 0.077 Elevation SD 0.593 1.000 0.357 –0.126 Log max rainfall 0.129 0.357 1.000 0.390 Max stability 0.077 –0.126 0.390 1.000 Table S3.2 Subregional richness of endemic taxa derived from all subtropical endemics combined (all), northern subtropical endemics only (N only) and southern subtropical endemics only. Northern species are those restricted to subregions 1–3, while southern species are those restricted to subregions 3-6 (see Fig. S2.1). * Subregion 3 encompasses the Border Ranges centre of endemism. Bold denotes the subregion being tested for inflation of richness due to the mid domain effect. Subregion Endemic (all) Endemic (N only) Endemic (S only) 1 29 14 NA 2 70 33 NA 3* 142 63 88 4 88 n.a. 51 5 46 n.a. 23 6 30 n.a. 16 Table S3.3 Relict, phylogenetically and geographically isolated endemic taxa in subtropical Australian rain forests, evidence from fossils and genetic studies. Species/Group Location Evidence References Petermannia cirrosa Family Petermanniaceae Subtropical Endemic Border Ranges to Hastings River Subtropical Endemic Sunshine Coast to Port Maquarie This vine is the sole extant member of the Petermanniaceae and a fossil from Victoria 35 Ma may belong to this family. One of two living species of the family Akaniaceae with its only extant relative in China (Bretschneidera) and fossils from South America 60 Ma These two vines constitute two of the three genera in the entire order Berberidopsales which is otherwise restricted to Chile, where the tree Aextoxicon punctatum and vine Berberidopsis carollinana occur. Berberidopsales are estimated to have evolved 113 Ma and diversified 88 Ma One of only three species in the Eupomatiaceae which is basal to widespread family Annonaceae, and similar to fossils from 90 Ma This vine is the only Australian representative of this small genus with others in the pacific, placed in the order Austrobaileyales, the third most basal lineage of flowering plants with a fossil 100 Ma in Japan Three species of the six species globally are endemic to subtropical rainforests Daphnandra along with Doryphora also from eastern Australia is the most basal (Conran, 1988; Conran et al., 1994). (Gandolfo et al., 1988; Gradek et al., 1992) Akania bidwillii Family Akaniaceae Berberidopsis beckleri and Streptothamnus moorei Family Berberidopsaceae Order Berberidopsales Eupomatia bennettii Family Eupomatiaceae Both Subtropical Endemics B. beckleri from Border Ranges to Barrington Tops, S. moorei From the Border Ranges to Clarence River Subtropical Endemic Bulburin to Nambucca Trimenia moorei Family Trimeniaceae Order Austrobaileyales Subtropical Endemic Border Ranges to Genus Daphnandra Family Atherospermataceae D. tenuipes restricted to Border Ranges, D. melasmana Border ranges and Dorrigo (Magallón & Castillo, 2009) (Carlquist, 1992; Crepet & Nixon, 1998; Doyle & Endress, 2010) (Yamada et al., 2008). (Renner et al., 2000) Species/Group Location Evidence and D. micrantha Hastings and Macleay Rivers. lineage in the Atherospermataceae. This lineage may have separated from the rest of the family 90 Ma and Doryphora from Daphnandra 38 Ma. One of only two species in the genus the other restricted to the Wet Tropics of North QLD, virtually identical fossil fruit are known from Victoria 40 Ma. The lineage is estimated to have split from the Protea clade > 90Ma Eidothea hardeniana Genus Eidothea Endemic to a single location on the Nightcap Range Border Ranges Macadamia jansenii, M. ternifolia, and M. tetraphylla Genus Macadamia This genus is Endemic to the Subtropics with three of the four species restricted to single refugia, Bulburin, Sunshine Coast and Border Ranges T. robusta is endemic to the Sunshine Coast while T. youngiana is endemic to the Border Ranges and Dorrigo. Subtropical endemic Border ranges and Sunshine Coast Triunia youngiana and T. robusta Floydia praealta Genus Floydia Nothofagus moorei Subtropical Endemic from Border Ranges to Barrington Tops Eucryphia jinksii Genus Eucryphia This species is endemic to two nearby locations on the Springbrook Plateau Border Ranges. Endemic to the Sunshine Coast Nothoalsomitra suberosa Genus Nothoalsomitra Endiandra pubens, E. virens, E. lowiana Neoastelia spectabilis Genus Neoastelia Elaeocarpus sedentarius and E. williamsianus Subtropical Endemics E. lowiana is restricted to the Sunshine Coast Endemic to the Dorrigo Ebor area. Both species are endemic to the Border Ranges, the genus is widespread in tropical asia. Macadamia jansenii diverged several million years ago from M. ternifolia. North Queensland taxa previously regarded in this genus are not closely related and are now in the genus Lasjia. Fossils similar to M. tetraphylla or M. ternifolia are known from the Miocene in New Zealand. Triunia is a lineage that diverged up to 80 MYA from Orites and Helicia two of the four living species are endemic to Subtropical Rainforests while the other two are endemic to the Wet Tropics. Floydia has only a single species in the genus which is endemic to Subtropical Rainforests and not found in the Wet Tropics, the lineage diverged 40-60 Ma from Xylomelum and Lambertia Genus with extensive fossil record and biogeographical significance. The nearest geographical and genetic relative N. cunninghamii from Victoria and Tasmania has been shown to have evolved from an N. moorei like ancestor. The nearest other species are in the Wet Tropics of North QLD and Southern NSW only two other species in temperate rainforests of South America. Fossil are known from southern Australia 60 Ma The only member of the genus which is an isolated lineage in the Cucurbitaceae that diverged 37 MYA and is basal to a clade of 300 old and new world species. Fossils similar to E. pubens are known from the Mid Miocene in Southern Australia The only living member of the genus Neoastelia may be basal to Milligania a genus with five species endemic to Tasmania A genetic phylogeny suggests that E. sedentarus and its nearest relative from New Guinea may have diverged 45 Ma and be basal to genera Elaeocarpus, Aristotlea and Sericolea. Fossil fruits similar to E. williamsianus are common in the Oligo-Miocene in NSW References (Weston & Kooyman, 2002 ; Rossetto & Kooyman, 2005; Barker et al., 2007 ; Sauquet et al., 2009) (Vadala & Greenwood, 2001; Mast et al., 2008 ) (Barker et al., 2007) (Barker et al., 2007 ; Mast et al., 2008) (Hill, 1983; Bale & Williams, 1993; Taylor et al., 2005; Heads, 2006; ) (Forster & Hyland, 1997; Barnes & Jordan, 2000; Barnes et al., 2001) (Kocyan et al., 2007 ; Schaefer et al., 2009) (Hyland, 1989; Vadala & Greenwood, 2001) (Maciunas et al., 2011) (Rozefelds & Christophel, 2002; Crayn et al., 2006 ; Maynard et al., 2008; Weber, 2009) Species/Group Location Hicksbeachia pinnatifolia Genus Hicksbeachia Endemic to the Border Ranges and Bellinger. Vesselowskya rubiifolia and V. venusta Genus Vesselowskya Endemic to Dorrigo Ebor and Barrington Tops Davidsonia jerseyana and D. johnsonii Endemic to the Border Ranges Genus Lenwebbia Border Ranges and Sunshine Coast Centres Evidence Victoria and Tasmania and E. williamsianus diverged from E. grandis 15 Ma One of only two named species in the genus with the other endemic to the wet Tropics of North QLD. Fossil fruits similar to Hicksbeachia are known from central QLD 30 Ma and in central NSW 12 Ma This genus is presently endemic to Subtropical Australia however a fossil virtually indistinguishable from V. rubiifolia is known from the Oligocene in Tasmania. Two of only three named species in the genus with the other endemic to the wet Tropics of North QLD. The second most basal lineage in Cunoniaceae that diverged 40 Ma. 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