Deep Ancestry: Inside the Genographic Project Spencer Wells Introduction What accelerated and limited the pace of work in the Human Genome Project? What was different about the thinking of Wells and his colleagues? How was genetics different than “big science”? Why is Wells on a “race against the clock”? What is happening to languages around the world and how is this related to the loss of distinct genetic lineages? 6. Using the information in this chapter, explain the differences between the Human Genome Project and the Genographic Project? 1. 2. 3. 4. 5. Vocabulary: Zeitgeist “Genie” HGP Genetic Anthropology Indigenous People Anthropologists Deep Ancestry Chapter 1: The Block What pull does Wells say that many people feel? What does Wells mean when he says “melting pot”? How do melting pots affect genetic research? Describe the largest migration in human history. What is the second most popular hobby in the US? Does this surprise you? What events in Well’s life shaped the face of his career? Wells states how many genes are found in the typical human cell, this book was written in 2007. Do some quick research online to see if his data are still accepted. 7. Does all DNA have an important job? 8. What analogy does Wells use to describe the copying of DNA? 9. Do mutations occur often? What are mutations responsible for? 10. What is bionomial nomenclature? Who established this field of biology and what groupings did he use for humans? 11. Write the correct name for humans using the system of bionomial nomenclature: ________________ 12. Explain the work of Karl Landsteiner. 13. What did the work of Richard Lewontin mean for the field of genetics? 14. What assumptions did Cavalli-Sforza and Anthony Edwards make before constructing their family trees? 15. What slowed down the progress of evolutionary genetics? 1. 2. 3. 4. 5. 6. Vocabulary: Evolutionary Genetics Natural Selection Adaptation Demography Junk DNA Morphology Polymorphisms Anecdotal Presaging Chapter 2: Odine’s Story – The Exception 1. Who is Odine and how is he possibly related to Thomas Jefferson? 2. What role did France play on the world scene in the 18th century? 3. Who were people likely to marry if they lived in France during the 18th century? What language were they likely to be speaking? 4. What effect does marrying people who live very near you have on the genetics of the local population? 5. What kind of relationships existed in the Hapsburg family? What was the visual evidence of this? 6. Why does a recombination of human DNA occur? 7. Explain in detail the steps taken to isolate and sequence DNA. 8. Once DNA is isolated, how did the researchers know what to look for? 9. How has PCR revolutionized genetic research? 10. How are variations (mutations) on the Y-chromosome notated? 11. What would the designation M43-positive mean about someone’s DNA. 12. Explain the unusual markers found in Odine’s (Jefferson’s) DNA. 13. How does the goal of the Genographic Project differ from that of the FBI in collecting DNA? 14. Has the Project been successful in collecting DNA of indigenous peoples? 15. What are the 7 main haplogroups groups found in Europe and which regions do they represent? Vocabulary: Currents Milieu Demographers Inertia Penchant Endogamous Cheek Scraper Haplotype Blocks Vagries Recombination Haplogroups PCR Crux Lineage Ruddy Chapter 3: Margaret’s Story – The Hearth 1. Who is Margaret? From where did she come? 2. Who is Linnaeus and what did he contribute to the field of biology? 3. How did the work of Darwin enhance the work of Linnaeus? 4. Describe mtDNA and the differences it has from nuclear DNA. 5. How is mtDNA inherited? 6. How can genetic diversity be used as a “clock” to determine how old a linage group is within a clan? 7. Do older or younger clans have more members, why? 8. How long ago did the founder of the J clan live? When did members of this clan enter into Europe? 9. Why does Wells think people began moving into Europe 10,000 years ago? 10. What other field works closely with the field genetics to piece together how people moved throughout the world? 11. Why did humans eventually abandon the hunter-gather existence over time? 12. What did farming do to human populations? Are there disadvantages to farming? 13. Describe the two conflicting views as to how farming spread throughout Europe, which was ultimately proven to be correct? 14. How did global temperatures affect the spread of the J clan? 15. Does the mtDNA data correspond with the Y chromosome data? 16. Do mtDNA and Y chromosomes mutate at the same rate? 17. What is genetic stuttering? 18. What explanations does Wells have for the fact that R1a1 has no mtDNA counterpart? 19. How did climate affect the clans of ancient Europe and the Middle East? 20. In Chapter 3, Wells discusses both immigration and emigration. Using another source explain the difference between these two term. Vocabulary: mtDNA monera prescient chimeras Bedouins Interdisciplinary Middens Neolithic revolution Phylogeography Variant Microsatellites Climatological Niches Refugia Hypothesis Eked Chapter 4: Phil’s Story – The Ice 1. Who is Phil and where did his ancestors come from? Did the results from the Genographic Project correspond with his own personal beliefs? 2. Why are aspens so remarkable? What does this have to do with genetics? 3. What is “almost always correct” in science? 4. Why do scientists have to use computers when comparing more than 3 or 4 people? 5. What happened around 16,000 years ago? 6. What adaptations and advancements allowed humans to move into Siberia about 20,000 years ago? 7. List what you know about the father of haplogroup Q. 8. Describe the migration into the Americas. 9. What is the difference between the law of large numbers and sampling error? When does each exist/occur? 10. Does the modern European (or American) population follow the law of large numbers? Why or why not? 11. Did the bands of people migrating into the Americas follow the law of large numbers? How did these impact characteristics within these populations? 12. How did Wells determine where/when M45 lived? 13. How distantly was Columbus related to the Native Americans he encountered when coming to the new world? 14. Where/when did M9 live? 15. Was it easier to map out connections between Y-chromosome data and mtDNA data in the Americas, Europe or Asia? Explain. 16. Who was already living in Europe when humans got there? 17. Are Neanderthals the ancestors of modern humans? If not, what happened to them? 18. What explains the vast phenotypic differences between Asians, Europeans and Indians? Vocabulary: Microclimate Topography Superclans Parsimony (Theory of Parsimony) Hypervariable Culling Terra Incognita En masse Sampling Error Genetic Drift Macrohaplogroups Murkier Eked Consummate Ensconced Lithe Overwintering Enclaves Sexual selection Chapter 5: Virumandi’s Story – The Beach 1. 2. 3. 4. Who is Virumandi? Where did his ancestors come from? What kind of “key role” does Central Asia play in the larger story of human migration? What continent holds the older evidence for our distant ancestors? Explain how/when Homo erectus, Neanderthals and Homo sapiens spread throughout the world. (Remember that Homo sapiens did this twice!) 5. Why are artifacts easier to study than human tissues and bones? 6. Art is something unique to the human species, go online and find two pictures of early art, print them off and bring them in for credit on the Chapter 5 discussion day. 7. How can old art be dated? 8. Australians live relatively close to Asia, why is their DNA so different than their Asian neighbors? 9. What is RPS4Y? 10. Why did early humans leave Africa in the first place? 11. Once they were established in Asia, how long did it take humans to spread throughout that landmass? What clans were here? 12. Who was the first man to show M168 and why is he considered important? 13. Who was L3a and why was she considered important? Vocabulary: Sherd Hominid Rock Art Optical Luminescence Paelolithic Interglacial Aborigines Chapter 6: Julius’s Story – The Cradle 1. Who is Julius? Where did his ancestors come from? 2. Why do we no longer see many hunter-gather tribes around the world? 3. Wells says that, “Vocal communication is one of the most difficult things we do.” Does this mean that the clicking languages found in Africa are simpler than more modern languages? 4. What two developments lead to a more advanced hominid called humans? 5. What is the likely reason our ancestors became bipedal? 6. What is the “Great Leap Forward”? 7. What do we learn about haplogroup B? 8. How can DNA be used as a tool to study the languages used by early humans? 9. What similarities do the San Bushman and the Hadzabe have? Are these connections significant? 10. Does the mtDNA data correlate with Y chromosome date in Africa? 11. Do all Africans have similar DNA? 12. Carefully explain why/how skin color has changed over the past 50,000 years. Why/when is darker skin beneficial? Why/when is lighter skin beneficial? 13. When did a mitochondrial “Eve” live? 14. When did a Y chromosome “Adam” live? 15. Why was the mtDNA studied more intensively than the Y chromosome? 16. Explain the differences in the dates for “Adam” and “Eve”. Be sure to discuss variance in reproductive success. 17. How many generations of humans have existed on this planet? Evolutionarily, is this a short or long amount of time? Vocabulary: Pre-agricultural Anachronism Vocalizations Syntax Alu element Maasai Pygmies Epicanthic fold Melanin Coalescence points Epilogue: The Future of the Genographic Project 1. How many samples were taken to compile the information found in this novel? Scientifically is this project over? Explain using your knowledge of the scientific method, theories and laws. 2. Choose a question from one member of Wells’ team. Using the internet research the question and see what advances have been make in the last three years since this book was published. 3. Is the Genographic Project finished? 4. What was the Human Genome Diversity Project? Why was it unsuccessful and how did the Genographic Project learn and grow from these mistakes? Vocabulary: Oceania