Quantum dot nanocrystals are nanometer sized semiconductor particles, which can be used for labeling biological systems. They are much brighter and more stable than conventional fluorophores, making the system optimal for high resolution imaging and long term studies. However, the potential for the use of quantum dots in the biological sciences has yet to be realized due to the lack of reliable labeling methods using commercially available reagents. Prior work in this area involves synthesizing and chemically conjugating quantum dots to molecules of interest in-house which is both time consuming and prone to human error. Additionally, non-specific binding and nanoparticle aggregation currently prevent researchers from utilizing this system to its fullest capacity. We have developed labeling methods using commercially available quantum dots specific to neurons and glia and have used these tools to label GFAP intermediate filament cellular bridges. Since quantum dots are bright and provide detail into cellular interactions, previously unidentifiable characteristics, such as GFAP bridges, are now visible. In addition, we have developed a technique to characterize the functional antibody bound to conjugated QDots. We define functional antibody as the antibody available for binding to the target ligands. We found that antibody oriented inwards on the Qdot is unavailable for binding, due to steric reasons. Previous attempts to characterize quantum dots never resulted in quantitative information which is necessary to determine the concentration of quantum dots to be delivered to the system. Using standard gel electrophoresis technology followed by membrane transfer, we have characterized the amount of functional antibody bound to quantum dots from commercially available conjugation kits.