species - Springer Static Content Server

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Table S1. Genome characteristics of 26 fully sequenced animals.
Species
Aedes aegypti
Anopheles gambiae
Apis mellifera
Bombyx mori
Bos taurus
Caenorhabditis briggsae
Caenorhabditis elegans
Canis familiaris
Ciona intestinalis
Danio rerio
Daphnia pulex
Drosophila melanogaster
Drosophila mojavensis
Drosophila pseudoobscura
Drosophila yakuba
Gallus gallus
Homo sapiens
Macaca mulatta
Monodelphis domestica
Mus musculus
Pan troglodytes
Rattus norvegicus
Strongylocentrotus purpuratus
Takifugu rubripes
Tribolium castaneum
Xenopus tropicalis
1.
2.
3.
4.
Genome size
[MB]
1,380.0
258.6
260.0
470.0
1,743.1
104.0
100.3
2,443.8
156.0
1,097.9
199.0
118.3
193.8
150.0
168.6
939.6
3,080.9
3,543.0
3,475.0
2,621.5
3,109.2
2,717.8
814.0
365.0
160.0
1,700.0
Recombination
rate [cM/Mb]
0.16
0.83
15.70
7.30
1.69
2.64
2.74
1.04
20.21
2.91
6.95
2.44
3.05
3.75
2.33
4.29
1.17
0.58
0.25
0.65
0.81
0.62
4.38
3.32
3.57
0.73
AT-content
0.622
0.554
0.673
0.675
0.572
0.626
0.646
0.587
0.650
0.637
0.620
0.575
0.605
0.548
0.577
0.589
0.591
0.585
0.623
0.583
0.598
0.581
0.631
0.555
0.669
0.550
GC-mutational Chromosome Taxonomy References
pressure
number [n]
3
Insect
1; 2
0.786
3
Insect
3; 4
0.418
16
Insect
5; 6
1.271
28
Insect
7; 8
1.089
30
Mammal
9; 10
0.636
6
Nematode
11; 12
1.880
6
Nematode
12; 13
1.842
39
Mammal
14; 15
0.633
14
Ascidian
16; 17
1.649
25
Fish
18; 19
0.907
12
Crustacean
20; 21
1.012
4
Insect
22; 23
0.543
4
Insect
24; 25
0.621
5
Insect
25; 26
0.401
4
Insect
25; 27
0.469
39
Bird
28; 29
0.815
23
Mammal
30; 31
0.734
21
Mammal
32; 33
0.679
9
Mammal
34
0.909
20
Mammal
35; 36
0.779
24
Mammal
37
0.615
21
Mammal
38;
39
0.732
20 Echinoderm
40; 41
1.298
22
Fish
42; 43
0.546
10
Insect
44; 45
0.578
18
Frog
46; 47
1.201
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Severson, D.W. et al. 2002. Linkage map organization of expressed sequence tags and sequence tagged sites in the mosquito, Aedes aegypti. Ins Mol Biol 11:371–378.
Holt, R.A. et al. 2002. The genome sequence of the malaria mosquito Anopheles gambiae. Science 298:129-149.
Zheng, L.B. et al. 1996. An integrated genetic map of the African human malaria vector mosquito, Anopheles gambiae. Genetics 143:941-952.
5.
6.
7.
8.
9.
10.
11.
12.
13.
14.
15.
16.
17.
18.
19.
20.
21.
22.
23.
24.
25.
26.
27.
28.
29.
30.
31.
32.
33.
34.
35.
36.
37.
38.
39.
40.
41.
The Honeybee Genome Sequencing Consortium 2006 Insights into social insects from the genome of the honeybee Apis mellifera. Nature 443:931-949.
Solignac, M. et al. 2007. A third-generation microsatellite-based linkage map of the honey bee, Apis mellifera, and its comparison with the sequence-based physical map.
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Xia, QY et al. 2004. A draft sequence for the genome of the domesticated silkworm (Bombyx mori). Science 306:1937-1940.
Miao, XX et al. 2005 Simple sequence repeat-based consensus linkage map of Bombyx mori. P Natl Acad Sci USA 102:16303-16308.
Baylor College of Medicine [http://www.hgsc.bcm.tmc.edu/projects/bovine/]
Snelling WM et al. 2005. Linkage mapping bovine EST-based SNP. BMC Genomics 6:74.
Gupta, BP, Sternberg, P.W. 2003. The draft genome sequence of the nematode Caenorhabditis briggsae, a companion to C. elegans. Genome Biol 4:238.
Wormbase [http://www.wormbase.org]
The C. elegans Sequencing Consortium 1998. Genome sequence of the nematode C. elegans: a platform for investigating biology. Science 282:2012-2018.
Lindblad-Toh, K. et al. 2005. Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature 438:803-819.
Sutter, N.B. et al. 2004. Extensive and breed-specific linkage disequilibrium in Canis familiaris. Genome Res 14:2388-2396.
Dehal, P. et al 2002. The Draft Genome of Ciona intestinalis: Insights into Chordate and Vertebrate Origins. Science 298:2157 – 2167.
Kano, S. et al. 2006. Primary Genetic Linkage Maps of the Ascidian, Ciona intestinalis. Zool Sci 23:31-39.
Woods, I.G. et al. 2005. The zebrafish gene map defines ancestral vertebrate chromosomes. Genome Res 15:1307-1314.
The Danio rerio Sequencing Project at SANGER institute [http://www.sanger.ac.uk/Projects/D_rerio/wgs.shtml]
wFleaBase [http://wfleabase.org/]
Cristescu, M.E.A. et al. 2006. A microsatellite-based genetic linkage map of the waterflea, Daphnia pulex: On the prospect of crustacean genomics. Genomics 88:415-430.
Adams, M.D. et al. 2000. The genome sequence of Drosophila melanogaster. Science 287:2185-2195.
FlyBase [http://flybase.bio.indiana.edu/]
Staten, R. et al. 2004. A microsatellite linkage map of Drosophila mojavensis. BMC Genet 5:12.
Drosophila 12 Genomes Consortium 2007. Evolution of genes and genomes on the Drosophila phylogeny. Nature 450:203-218.
Ortiz-Barrientos, D. et al. 2006. A recombinational portrait of the Drosophila pseudoobscura genome. Genet Res 87:23-31.
Takano-Shimizu, T. 2001. Local changes in GC/AT substitution biases and in crossover frequencies on Drosophila chromosomes. Mol Biol Evol 18:606-619.
Takahashi, H. et al. 2005. A chicken linkage map based on microsatellite markers genotyped on a Japanese Large Game and White Leghorn cross. Anim Genet 36:463-467.
NCBI Chicken Genome Resources [http://www.ncbi.nlm.nih.gov/genome/guide/chicken/]
Lander, E.S. et al. 2001. Initial sequencing and analysis of the human genome. Nature 409:860-921.
Kong, A. et al. 2002. A high-resolution recombination map of the human genome. Nat Genet 31:241-247.
Rogers, J. et al. 2006. An initial genetic linkage map of the rhesus macaque (Macaca mulatta) genome using human microsatellite loci. Genomics 87:30-38.
Rhesus Macaque Genome Sequencing and Analysis Consortium 2007. Evolutionary and Biomedical Insights from the Rhesus Macaque Genome. Science 316:222-234.
Mikkelsen, T.S. et al. 2007. Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences. Nature 447:167-177.
Waterston, R.H. et al. 2002. Initial sequencing and comparative analysis of the mouse genome. Nature 420:520-562.
MGI - Mouse Genome Informatics [http://www.informatics.jax.org/]
Chimpanzee Sequencing Analysis Consortium 2005. Initial sequence of the chimpanzee genome and comparison with the human genome. Nature 437:69-87.
Steen, R.G. et al. 1999. A high-density integrated genetic linkage and radiation hybrid map of the laboratory rat. Genome Res 9:AP1-AP8.
Rat Genome Sequencing Project Consortium 2004. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature 428:493-521.
Sea Urchin Genome Sequencing Consortium 2006. The Genome of the Sea Urchin Strongylocentrotus purpuratus. Science 314:941-952.
Zhoua, Z. et al. 2006. AFLP linkage map of sea urchin constructed using an interspecific cross between Strongylocentrotus nudus (♀) and S. intermedius (♂). Aquaculture
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42.
43.
44.
45.
Aparicio S. et al. 2002. Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science 297:1301-1310.
Kai, W. et al. 2005. A genetic linkage map for the tiger pufferfish, Takifugu rubripes. Genetics 171:227-238.
Tribolium Genome Sequencing Consortium 2008. The genome of the model beetle and pest Tribolium castaneum. Nature in press.
Lorenzen, M.D. et al. 2005. Genetic linkage maps of the red flour beetle, Tribolium castaneum, based on bacterial artificial chromosomes and expressed sequence tags. Genetics
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46. Joint Genome Institute [http://genome.jgi-psf.org/Xentr4/Xentr4.home.html]
47. Genetic Map of Xenopus tropicalis [http://tropmap.biology.uh.edu/map.html]
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