High rate of calculation errors in mismatch distribution analysis result in numerous
false inferences of biological importance
T. SCHENEKAR and S. WEISS
Supplementary File II
List 1: Manuscripts that reported a time since expansion value that matched our re-
calculation or fell within the ± 5% tolerance interval
Almada VC, Pereira AM, Robalo JI, et al. (2008) Mitochondrial DNA fails to reveal genetic structure
in sea-lampreys along European shores. Mol Phylogenet Evol 46, 391-396.
Alvarez-Castaneda ST, Patton JL (2004) Geographic genetic architecture of pocket gopher (Thomomys
bottae) populations in Baja California, Mexico. Mol Ecol 13, 2287-2301.
Ascunce MS, Hasson E, Mulligan CJ, Mudry MD (2007) Mitochondrial sequence diversity of the
southernmost extant New World monkey, Alouatta caraya. Mol Phylogenet Evol 43, 202-215.
Baker AM, Williams SA, Hughes JM (2003) Patterns of spatial genetic structuring in a hydropsychid
caddisfly (Cheumatopsyche sp. AV1) from southeastern Australia. Mol Ecol 12, 3313-3324.
Boulet M, Gibbs HL (2006) Lineage origin and expansion of a Neotropical migrant songbird after
recent glaciation events. Mol Ecol 15, 2505-2525.
Brandli L, Handley LJ, Vogel P, Perrin N (2005) Evolutionary history of the greater white-toothed
shrew (Crocidura russula) inferred from analysis of mtDNA, Y, and X chromosome markers.
Mol Phylogenet Evol 37, 832-844.
Carlsson J, McDowell JR, Diaz-Jaimes P, et al. (2004) Microsatellite and mitochondrial DNA
analyses of Atlantic bluefin tuna (Thunnus thynnus thynnus) population structure in the
Mediterranean Sea. Mol Ecol 13, 3345-3356.
Chen SF, Rossiter SJ, Faulkes CG, Jones G (2006) Population genetic structure and demographic
history of the endemic Formosan lesser horseshoe bat (Rhinolophus monoceros). Mol Ecol 15,
1643-1656.
Chu JH, Lin YS, Wu HY (2007) Evolution and dispersal of three closely related macaque species,
Macaca mulatta, M. cyclopis, and M. fuscata, in the eastern Asia. Mol Phylogenet Evol 43,
418-429.
Dalen L, Fuglei EVA, et al. (2005) Population history and genetic structure of a circumpolar species:
the arctic fox. Biological Journal of the Linnean Society 84, 79-89.
De Gelas K, De Meester L (2005) Phylogeography of Daphnia magna in Europe. Mol Ecol 14, 753764.
Dejong RJ, Morgan JA, Wilson WD, et al. (2003) Phylogeography of Biomphalaria glabrata and B.
pfeifferi, important intermediate hosts of Schistosoma mansoni in the New and Old World
tropics. Mol Ecol 12, 3041-3056.
Fedorov VB, Goropashnaya AV, Jaarola M, Cook JA (2003) Phylogeography of lemmings (Lemmus):
no evidence for postglacial colonization of Arctic from the Beringian refugium. Mol Ecol 12,
725-731.
Förster DW, Gündüz I, Nunes AC, et al. (2009) Molecular insights into the colonization and
chromosomal diversification of Madeiran house mice. Molecular Ecology 18, 4477-4494.
Galbreath KE, Cook JA (2004) Genetic consequences of Pleistocene glaciations for the tundra vole
(Microtus oeconomus) in Beringia. Molecular Ecology 13, 135-148.
García JT, Suárez F, Garza V, et al. (2008) Genetic and phenotypic variation among geographically
isolated populations of the globally threatened Dupont's lark Chersophilus duponti. Molecular
Phylogenetics and Evolution 46, 237-251.
Gelembiuk GW, May GE, Lee CE (2006) Phylogeography and systematics of zebra mussels and
related species. Mol Ecol 15, 1033-1050.
Goropashnaya AV, Fedorov VB, Seifert B, Pamilo P (2004) Limited phylogeographical structure
across Eurasia in two red wood ant species Formica pratensis and F. lugubris (Hymenoptera,
Formicidae). Mol Ecol 13, 1849-1858.
Gysels ES, Hellemans B, Pampoulie C, Volckaert FA (2004a) Phylogeography of the common goby,
Pomatoschistus microps, with particular emphasis on the colonization of the Mediterranean
and the North Sea. Mol Ecol 13, 403-417.
Hasan AU, Suguri S, Fujimoto C, et al. (2008) Phylogeography and dispersion pattern of Anopheles
farauti senso stricto mosquitoes in Melanesia. Mol Phylogenet Evol 46, 792-800.
Huang S, He S, Peng Z, Zhao K, Zhao E (2007a) Molecular phylogeography of endangered sharpsnouted pitviper (Deinagkistrodon acutus; Reptilia, Viperidae) in Mainland China. Mol
Phylogenet Evol 44, 942-952.
Huang Z, Liu N, Liang W, et al. (2010) Phylogeography of Chinese bamboo partridge, Bambusicola
thoracica thoracica (Aves: Galliformes) in south China: inference from mitochondrial DNA
control-region sequences. Mol Phylogenet Evol 56, 273-280.
Huang Z, Liu N, Luo S, Long J (2007b) Phylogeography of rusty-necklaced partridge (Alectoris
magna) in northwestern China. Mol Phylogenet Evol 43, 379-385.
Hull JM, Girman DJ (2005) Effects of Holocene climate change on the historical demography of
migrating sharp-shinned hawks (Accipiter striatus velox) in North America. Mol Ecol 14, 159170.
Hundertmark KJ, Shields GF, Udina IG, et al. (2002) Mitochondrial phylogeography of moose (Alces
alces): late pleistocene divergence and population expansion. Mol Phylogenet Evol 22, 375387.
Ishida S, Taylor DJ (2007) Quaternary diversification in a sexual Holarctic zooplankter, Daphnia
galeata. Mol Ecol 16, 569-582.
Johannesen JES, Kiefer A, Veith M, Kral J (2005) Genetic cohesion of Eresus walckenaeri (Araneae,
Eresidae) in the eastern Mediterranean. Biological Journal of the Linnean Society 86, 1-9.
Johnson JA, Dunn PO, Bouzat JL (2007) Effects of recent population bottlenecks on reconstructing
the demographic history of prairie-chickens. Mol Ecol 16, 2203-2222.
Jolly MT, Viard F, Gentil F, Thiebaut E, Jollivet D (2006) Comparative phylogeography of two
coastal polychaete tubeworms in the Northeast Atlantic supports shared history and vicariant
events. Mol Ecol 15, 1841-1855.
Joseph L, Wilke T, Alpers D (2002) Reconciling genetic expectations from host specificity with
historical population dynamics in an avian brood parasite, Horsfield's Bronze-Cuckoo
Chalcites basalis of Australia. Mol Ecol 11, 829-837.
Koskinen MT, Knizhin I, Primmer CR, Schlotterer C, Weiss S (2002) Mitochondrial and nuclear DNA
phylogeography of Thymallus spp (grayling) provides evidence of ice-age mediated
environmental perturbations in the world's oldest body of fresh water, Lake Baikal. Mol Ecol
11, 2599-2611.
Kvist L, Broggi J, Illera JC, Koivula K (2005) Colonisation and diversification of the blue tits (Parus
caeruleus teneriffae-group) in the Canary Islands. Mol Phylogenet Evol 34, 501-511.
Lebarbenchon C, Poitevin F, Arnal V, Montgelard C (2010) Phylogeography of the weasel (Mustela
nivalis) in the western-Palaearctic region: combined effects of glacial events and human
movements. Heredity.
Lecomte F, Grant WS, Dodson JJ, Rodriguez-Sanchez R, Bowen BW (2004) Living with uncertainty:
genetic imprints of climate shifts in East Pacific anchovy (Engraulis mordax) and sardine
(Sardinops sagax). Mol Ecol 13, 2169-2182.
Lindblom L, Ekman S (2006) Genetic variation and population differentiation in the lichen-forming
ascomycete Xanthoria parietina on the island Storfosna, central Norway. Mol Ecol 15, 15451559.
Liu JX, Gao TX, Yokogawa K, Zhang YP (2006a) Differential population structuring and
demographic history of two closely related fish species, Japanese sea bass (Lateolabrax
japonicus) and spotted sea bass (Lateolabrax maculatus) in Northwestern Pacific. Mol
Phylogenet Evol 39, 799-811.
Liu JX, Gao TX, Zhuang ZM, et al. (2006b) Late Pleistocene divergence and subsequent population
expansion of two closely related fish species, Japanese anchovy (Engraulis japonicus) and
Australian anchovy (Engraulis australis). Mol Phylogenet Evol 40, 712-723.
Liu Y, Zhan X, Wang N, Chang J, Zhang Z (2010) Effect of geological vicariance on mitochondrial
DNA differentiation in Common Pheasant populations of the Loess Plateau and eastern China.
Mol Phylogenet Evol 55, 409-417.
Ludwig A, Congiu L, Pitra C, et al. (2003) Nonconcordant evolutionary history of maternal and
paternal lineages in Adriatic sturgeon. Mol Ecol 12, 3253-3264.
Malyarchuk B, Derenko M, Berman D, et al. (2010) Phylogeography and molecular adaptation of
Siberian salamander Salamandrella keyserlingii based on mitochondrial DNA variation. Mol
Phylogenet Evol 56, 562-571.
Mareile Techow NM, Ryan PG, O'Ryan C (2009) Phylogeography and taxonomy of White-chinned
and Spectacled Petrels. Mol Phylogenet Evol 52, 25-33.
Marko PB, Hoffman JM, Emme SA, et al. (2010) The ‘Expansion–Contraction’ model of Pleistocene
biogeography: rocky shores suffer a sea change? Molecular Ecology 19, 146-169.
Marmi J, Bertranpetit J, Terradas J, Takenaka O, Domingo-Roura X (2004) Radiation and
phylogeography in the Japanese macaque, Macaca fuscata. Mol Phylogenet Evol 30, 676-685.
McMillen-Jackson AL, Bert TM (2003) Disparate patterns of population genetic structure and
population history in two sympatric penaeid shrimp species (Farfantepenaeus aztecus and
Litopenaeus setiferus) in the eastern United States. Mol Ecol 12, 2895-2905.
Melo-Ferreira J, Boursot P, Randi E, et al. (2007) The rise and fall of the mountain hare (Lepus
timidus) during Pleistocene glaciations: expansion and retreat with hybridization in the Iberian
Peninsula. Mol Ecol 16, 605-618.
Navascues M, Vaxevanidou Z, Gonzalez-Martinez SC, et al. (2006) Chloroplast microsatellites reveal
colonization and metapopulation dynamics in the Canary Island pine. Mol Ecol 15, 26912698.
Ostbye K, Bernatchez L, Naesje TF, Himberg KJ, Hindar K (2005) Evolutionary history of the
European whitefish Coregonus lavaretus (L.) species complex as inferred from mtDNA
phylogeography and gill-raker numbers. Mol Ecol 14, 4371-4387.
Pedraza-Lara C, Alda F, Carranza S, Doadrio I (2010) Mitochondrial DNA structure of the Iberian
populations of the white-clawed crayfish, Austropotamobius italicus italicus (Faxon, 1914).
Mol Phylogenet Evol 57, 327-342.
Peters JL, Gretes W, Omland KE (2005) Late Pleistocene divergence between eastern and western
populations of wood ducks (Aix sponsa) inferred by the 'isolation with migration' coalescent
method. Mol Ecol 14, 3407-3418.
Pfeiler E, Bitler BG, Castrezana S, Matzkin LM, Markow TA (2009) Genetic diversification and
demographic history of the cactophilic pseudoscorpion Dinocheirus arizonensis from the
Sonoran Desert. Mol Phylogenet Evol 52, 133-141.
Provan J, Wattier RA, Maggs CA (2005) Phylogeographic analysis of the red seaweed Palmaria
palmata reveals a Pleistocene marine glacial refugium in the English Channel. Mol Ecol 14,
793-803.
Qiu YX, Guan BC, Fu CX, Comes HP (2009) Did glacials and/or interglacials promote allopatric
incipient speciation in East Asian temperate plants? Phylogeographic and coalescent analyses
on refugial isolation and divergence in Dysosma versipellis. Mol Phylogenet Evol.
Qu J, Liu N, Bao X, Wang X (2009) Phylogeography of the ring-necked pheasant (Phasianus
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Qu Y, Lei F (2009) Comparative phylogeography of two endemic birds of the Tibetan plateau, the
white-rumped snow finch (Onychostruthus taczanowskii) and the Hume's ground tit
(Pseudopodoces humilis). Mol Phylogenet Evol.
Quérouil S, Verheyen E, Dillen M, Colyn M (2003) Patterns of diversification in two African forest
shrews: Sylvisorex johnstoni and Sylvisorex ollula (Soricidae, Insectivora) in relation to paleoenvironmental changes. Molecular Phylogenetics and Evolution 28, 24-37.
Randi E, Tabarroni C, Rimondi S, Lucchini V, Sfougaris A (2003) Phylogeography of the rock
partridge (Alectoris graeca). Mol Ecol 12, 2201-2214.
Rocha LA, Robertson DR, Rocha CR, et al. (2005) Recent invasion of the tropical Atlantic by an
Indo-Pacific coral reef fish. Mol Ecol 14, 3921-3928.
Ruzzante DE, Walde SJ, Cussac VE, et al. (2006) Phylogeography of the Percichthyidae (Pisces) in
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Seki S, Sakanashi M, Kawaji N, Kotaka N (2007) Phylogeography of the Ryukyu robin (Erithacus
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habit. Mol Ecol 16, 101-113.
Strasburg JL, Kearney M (2005) Phylogeography of sexual Heteronotia binoei (Gekkonidae) in the
Australian arid zone: climatic cycling and repetitive hybridization. Mol Ecol 14, 2755-2772.
Techow NM, O'Ryan C, Phillips RA, et al. (2010) Speciation and phylogeography of giant petrels
Macronectes. Mol Phylogenet Evol 54, 472-487.
Uthicke S, Benzie JA (2003) Gene flow and population history in high dispersal marine invertebrates:
mitochondrial DNA analysis of Holothuria nobilis (Echinodermata: Holothuroidea)
populations from the Indo-Pacific. Mol Ecol 12, 2635-2648.
Van Houdt JK, De Cleyn L, Perretti A, Volckaert FA (2005) A mitogenic view on the evolutionary
history of the Holarctic freshwater gadoid, burbot (Lota lota). Mol Ecol 14, 2445-2457.
Van Houdt JK, Hellemans B, Volckaert FAM (2003) Phylogenetic relationships among Palearctic and
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Phylogenetics and Evolution 29, 599-612.
Vianna JA, Bonde RK, Caballero S, et al. (2006) Phylogeography, phylogeny and hybridization in
trichechid sirenians: implications for manatee conservation. Mol Ecol 15, 433-447.
Voje KL, Hemp C, Flagstad O, Saetre GP, Stenseth NC (2009) Climatic change as an engine for
speciation in flightless Orthoptera species inhabiting African mountains. Mol Ecol 18, 93-108.
Yang FS, Li YF, Ding X, Wang XQ (2008) Extensive population expansion of Pedicularis longiflora
(Orobanchaceae) on the Qinghai-Tibetan Plateau and its correlation with the Quaternary
climate change. Mol Ecol 17, 5135-5145.
Yang L, Mayden RL, He S (2009) Population Genetic Structure and Geographical Differentiation of
the Chinese Catfish Hemibagrus macropterus (Siluriformes, Bagridae): Evidence for Altered
Drainage Patterns. Mol Phylogenet Evol.
Yang SJ, Yin ZH, Ma XM, Lei FM (2006) Phylogeography of ground tit (Pseudopodoces humilis)
based on mtDNA: evidence of past fragmentation on the Tibetan Plateau. Mol Phylogenet
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Zane L, Marcato S, Bargelloni L, et al. (2006) Demographic history and population structure of the
Antarctic silverfish Pleuragramma antarcticum. Mol Ecol 15, 4499-4511.
List 2: Manuscripts that reported a time since expansion value outside the ± 5% tolerance
interval of our re-calculations
Aboim MA, Menezes GM, Schlitt T, Rogers AD (2005) Genetic structure and history of populations
of the deep-sea fish Helicolenus dactylopterus (Delaroche, 1809) inferred from mtDNA
sequence analysis. Mol Ecol 14, 1343-1354.
Alpers DL, Van Vuuren BJ, Arctander P, Robinson TJ (2004) Population genetics of the roan antelope
(Hippotragus equinus) with suggestions for conservation. Mol Ecol 13, 1771-1784.
Atarhouch T, Ruber L, Gonzalez EG, et al. (2006) Signature of an early genetic bottleneck in a
population of Moroccan sardines (Sardina pilchardus). Mol Phylogenet Evol 39, 373-383.
Babbucci M, Buccoli S, Cau A, et al. (2010) Population structure, demographic history, and selective
processes: contrasting evidences from mitochondrial and nuclear markers in the European
spiny lobster Palinurus elephas (Fabricius, 1787). Mol Phylogenet Evol 56, 1040-1050.
Bailey NW, Gwynne DT, Ritchie MG (2007) Dispersal differences predict population genetic
structure in Mormon crickets. Mol Ecol 16, 2079-2089.
Barluenga M, Meyer A (2004) The Midas cichlid species complex: incipient sympatric speciation in
Nicaraguan cichlid fishes? Mol Ecol 13, 2061-2076.
Barluenga M, Meyer A (2005) Old fish in a young lake: stone loach (Pisces: Barbatula barbatula)
populations in Lake Constance are genetically isolated by distance. Mol Ecol 14, 1229-1239.
Bartish IV, Kadereit JW, Comes HP (2006) Late Quaternary history of Hippophae rhamnoides L.
(Elaeagnaceae) inferred from chalcone synthase intron (Chsi) sequences and chloroplast DNA
variation. Mol Ecol 15, 4065-4083.
Carranza S, Arnold EN, J.M. P (2006) Phylogeny, biogeography, and evolution of two Mediterranean
snakes Malpolon monspessulauns and Meorrhois hippocrepis (Squamata, Colubridae) using
mtDNA sequences. Mol Phylogenet Evol 40, 15.
Castiglia R, Annesi F, Capanna E (2005) Geographical pattern of genetic variation in the Robertsonian
system of Mus musculus domesticus in central Italy. Biological Journal of the Linnean Society
84, 395-405.
Castoe TA, Spencer CL, Parkinson CL (2007) Phylogeographic structure and historical demography
of the western diamondback rattlesnake (Crotalus atrox): A perspective on North American
desert biogeography. Mol Phylogenet Evol 42, 193-212.
Charrier G, Chenel T, Durand JD, et al. (2006) Discrepancies in phylogeographical patterns of two
European anglerfishes (Lophius budegassa and Lophius piscatorius). Mol Phylogenet Evol 38,
742-754.
Chen B, Harbach RE, Butlin RK (2004) Genetic variation and population structure of the mosquito
Anopheles jeyporiensis in southern China. Mol Ecol 13, 3051-3056.
Chen B, Pedro PM, Harbach RE, et al. (2010) Mitochondrial DNA variation in the malaria vector
Anopheles minimus across China, Thailand and Vietnam: evolutionary hypothesis, population
structure and population history. Heredity.
Chenoweth SF, Hughes JM (2003) Oceanic interchange and nonequilibrium population structure in
the estuarine dependent Indo-Pacific tasselfish, Polynemus sheridani. Mol Ecol 12, 23872397.
Culling MA, Janko K, Boron A, et al. (2006) European colonization by the spined loach (Cobitis
taenia) from Ponto-Caspian refugia based on mitochondrial DNA variation. Mol Ecol 15, 173190.
Curtis C, Stewart BS, Karl SA (2009) Pleistocene population expansions of Antarctic seals. Mol Ecol
18, 2112-2121.
Domingues VS, Santos RS, Brito A, Almada VC (2006) Historical population dynamics and
demography of the Eastern Atlantic pomacentrid Chromis limbata (Valenciennes, 1833). Mol
Phylogenet Evol 40, 139-147.
Dubey S, Zaitsev M, Cosson JF, Abdukadier A, Vogel P (2006) Pliocene and Pleistocene
diversification and multiple refugia in a Eurasian shrew (Crocidura suaveolens group). Mol
Phylogenet Evol 38, 635-647.
Duncan KM, Martin AP, Bowen BW, HG DEC (2006) Global phylogeography of the scalloped
hammerhead shark (Sphyrna lewini). Mol Ecol 15, 2239-2251.
Duran S, Palacin C, Becerro MA, Turon X, Giribet G (2004) Genetic diversity and population
structure of the commercially harvested sea urchin Paracentrotus lividus (Echinodermata,
Echinoidea). Mol Ecol 13, 3317-3328.
Filatov DA, Burke S (2004) DNA diversity in Hawaiian endemic plant Schiedea globosa. Heredity 92,
452-458.
Fontanella FM, Feldman CR, Siddall ME, Burbrink FT (2008) Phylogeography of Diadophis
punctatus: extensive lineage diversity and repeated patterns of historical demography in a
trans-continental snake. Mol Phylogenet Evol 46, 1049-1070.
Francisco SM, Vieira MN, Almada VC (2006) Genetic structure and historical demography of the
shanny Lipophrys pholis in the Portuguese coast based on mitochondrial DNA analysis. Mol
Phylogenet Evol 39, 288-292.
Grant WS, Bowen BW (2006) Living in a tilted world: climate change and geography limit speciation
in Old World anchovies (Engraulis; Engraulidae). Biological Journal of the Linnean Society
88, 673-689.
Gysels ES, Hellemans B, Patarnello T, Volckaert FAM (2004b) Current and historic gene flow of the
sand goby Pomatoschistus minutus on the European Continental Shelf and in the
Mediterranean Sea. Biological Journal of the Linnean Society 83, 561-576.
Horn A, Stauffer C, Lieutier F, Kerdelhue C (2009) Complex postglacial history of the temperate bark
beetle Tomicus piniperda L. (Coleoptera, Scolytinae). Heredity 103, 238-247.
Horne JB, van Herwerden L, Choat JH, Robertson DR (2008) High population connectivity across the
Indo-Pacific: Congruent lack of phylogeographic structure in three reef fish congeners. Mol
Phylogenet Evol 49, 629-638.
Iyengar A, Gilbert T, Woodfine T, et al. (2007) Remnants of ancient genetic diversity preserved
within captive groups of scimitar-horned oryx (Oryx dammah). Mol Ecol 16, 2436-2449.
Jensen-Seaman MI, Kidd KK (2001) Mitochondrial DNA variation and biogeography of eastern
gorillas. Mol Ecol 10, 2241-2247.
Jouventin P, Cuthbert RJ, Ottvall R (2006) Genetic isolation and divergence in sexual traits: evidence
for the northern rockhopper penguin Eudyptes moseleyi being a sibling species. Mol Ecol 15,
3413-3423.
King MG, Horning ME, Roalson EH (2009) Range persistence during the last glacial maximum:
Carex macrocephala was not restricted to glacial refugia. Mol Ecol 18, 4256-4269.
Koch MA, Kiefer C, Ehrich D, et al. (2006) Three times out of Asia Minor: the phylogeography of
Arabis alpina L. (Brassicaceae). Mol Ecol 15, 825-839.
Kvist L, Ruokonen M, Lumme J, Orell M (1999) The colonization history and present-day population
structure of the european great tit (Parus major major). Heredity 82 (Pt 5), 495-502.
Lin LH, Ji X, Diong CH, Du Y, Lin CX (2010a) Phylogeography and population structure of the
Reevese's Butterfly Lizard (Leiolepis reevesii) inferred from mitochondrial DNA sequences.
Mol Phylogenet Evol 56, 601-607.
Lin W, Zhou R, Porter L, Chen J, Wu Y (2010b) Evolution of Sousa chinensis: A scenario based on
mitochondrial DNA study. Mol Phylogenet Evol.
Lloyd BD (2003) The demographic history of the New Zealand short-tailed bat Mystacina tuberculata
inferred from modified control region sequences. Mol Ecol 12, 1895-1911.
Lopez-Castro MC, Rocha-Olivares A (2005) The panmixia paradigm of eastern Pacific olive ridley
turtles revised: consequences for their conservation and evolutionary biology. Mol Ecol 14,
3325-3334.
Luttikhuizen PC, Campos J, Bleijswijk J, Peijnenburg KT, van der Veer HW (2008) Phylogeography
of the common shrimp, Crangon crangon (L.) across its distribution range. Mol Phylogenet
Evol 46, 1015-1030.
Machado-Schiaffino G, Campo D, Garcia-Vazquez E (2009) Strong genetic differentiation of the
Austral hake (Merluccius australis) across the species range. Mol Phylogenet Evol 53, 351356.
Magoulas A, Castilho R, Caetano S, Marcato S, Patarnello T (2006) Mitochondrial DNA reveals a
mosaic pattern of phylogeographical structure in Atlantic and Mediterranean populations of
anchovy (Engraulis encrasicolus). Mol Phylogenet Evol 39, 734-746.
Marmi J, Lopez-Giraldez F, Macdonald DW, et al. (2006) Mitochondrial DNA reveals a strong
phylogeographic structure in the badger across Eurasia. Mol Ecol 15, 1007-1020.
Martinez P, Gonzalez EG, Castilho R, Zardoya R (2006) Genetic diversity and historical demography
of Atlantic bigeye tuna (Thunnus obesus). Mol Phylogenet Evol 39, 404-416.
Mathews LM (2006) Cryptic biodiversity and phylogeographical patterns in a snapping shrimp species
complex. Mol Ecol 15, 4049-4063.
Mejri R, Lo Brutto S, Hassine OK, Arculeo M (2009) A study on Pomatoschistus tortonesei Miller
1968 (Perciformes, Gobiidae) reveals the Siculo-Tunisian Strait (STS) as a breakpoint to gene
flow in the Mediterranean basin. Mol Phylogenet Evol 53, 596-601.
Mirabello L, Conn JE (2006) Molecular population genetics of the malaria vector Anopheles darlingi
in Central and South America. Heredity 96, 311-321.
Moya O, Contreras-Diaz HG, Oromi P, Juan C (2004) Genetic structure, phylogeography and
demography of two ground-beetle species endemic to the Tenerife laurel forest (Canary
Islands). Mol Ecol 13, 3153-3167.
Perez-Espona S, Perez-Barberia FJ, Goodall-Copestake WP, et al. (2009) Genetic diversity and
population structure of Scottish Highland red deer (Cervus elaphus) populations: a
mitochondrial survey. Heredity 102, 199-210.
Pramual P, Kuvangkadilok C, Baimai V, Walton C (2005) Phylogeography of the black fly Simulium
tani (Diptera: Simuliidae) from Thailand as inferred from mtDNA sequences. Mol Ecol 14,
3989-4001.
Randi E, Alves PC, Carranza J, et al. (2004) Phylogeography of roe deer (Capreolus capreolus)
populations: the effects of historical genetic subdivisions and recent nonequilibrium dynamics.
Mol Ecol 13, 3071-3083.
Rowe KC, Heske EJ, Paige KN (2006) Comparative phylogeography of eastern chipmunks and whitefooted mice in relation to the individualistic nature of species. Mol Ecol 15, 4003-4020.
Ratkiewicz M, Fedyk S, Banaszek A, et al. (2002) The evolutionary history of the two karyotypic
groups of the common shrew, Sorex araneus, in Poland. Heredity 88, 235-242.
Russell AL, Medellin RA, McCracken GF (2005) Genetic variation and migration in the Mexican
free-tailed bat (Tadarida brasiliensis mexicana). Mol Ecol 14, 2207-2222.
Saillant E, Patton JC, Ross KE, Gold JR (2004) Conservation genetics and demographic history of the
endangered Cape Fear shiner (Notropis mekistocholas). Mol Ecol 13, 2947-2958.
Salgueiro P, Coelho MM, Palmeirim JM, Ruedi M (2004) Mitochondrial DNA variation and
population structure of the island endemic Azorean bat (Nyctalus azoreum). Mol Ecol 13,
3357-3366.
Salzburger W, Brandstatter A, Gilles A, et al. (2003) Phylogeography of the vairone (Leuciscus
souffia, Risso 1826) in Central Europe. Mol Ecol 12, 2371-2386.
Spaulding AW, Mock KE, Schroeder MA, Warheit KI (2006) Recency, range expansion, and unsorted
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