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Automated identification of single nucleotide polymorphisms from sequencing
Takahashi,
M.;
Matsuda,
F.;
Margetic,
N.;
Lathrop,
Bioinformatics
Conference,
2002.
Proceedings.
IEEE
Computer
Society
,
Page(s): 87 –93
data
M.;
2002
Visualization
techniques
Loraine,
A.E.;
Bioinformatics
Conference,
2002.
Page(s): 321 –326
data
G.A.;
2002
for
Proceedings.
genomic
Helt,
IEEE
Computer
Society
,
A Kohonen self-organizing map for the functional classification of proteins based on one-dimensional
sequence
information
Pollock,
R.;
Lane,
T.;
Watts,
M.;
Neural Networks, 2002. IJCNN '02. Proceedings of the 2002 International Joint Conference on , Volume: 1 ,
2002
Page(s): 189 –192
A
framework
Wei
Data
Engineering,
Page(s): 282
towards
efficient
and
effective
sequence
Wang;
Jiong
2002.
Proceedings.
18th
International
Conference
on
clustering
Yang;
,
2002
A hydrophobicity based neural network method for predicting transmembrane segments in protein
sequences
Zhongqiang
Chen;
Qi
Liu;
Yisheng
Zhu;
Yixue
Li;
Yohong
Xu;
Engineering in Medicine and Biology Society, 2001. Proceedings of the 23rd Annual International
Conference
of
the
IEEE
,
Volume:
3
,
2001
Page(s): 2899 -2902 vol.3
Phylogenetic
tree
reconstruction
using
self-adaptive
genetic
algorithm
Skourikhine,
A.;
Bio-Informatics and Biomedical Engineering, 2000. Proceedings. IEEE International Symposium on , 2000
Page(s): 129 –134
Engineering
in
genomics
Boland,
M.V.;
Murphy,
R.F.;
IEEE Engineering in Medicine and Biology Magazine , Volume: 18 Issue: 5 , Sep/Oct 1999
Page(s): 115 –119
Sequence
comparison
using
a
relational
database
approach
Bergholz,
A.;
Schenk,
J.A.;
Heymann,
S.;
Freytag,
J.C.;
Database Engineering and Applications Symposium, 1997. IDEAS '97. Proceedings., International , 25-27
Aug
1997
Page(s): 126 –131
Gene
classification
artificial
neural
system
Wu,
C.H.;
Hsi-Lien
Chen;
Intelligence in Neural and Biological Systems, 1995. INBS'95, Proceedings., First International Symposium
on
,
29-31
May
1995
Page(s): 102 –107
Machine
Craven,
learning
approaches
M.W.;
to
gene
Shavlik,
recognition
J.W.;
Expert, IEEE
Page(s): 2 –10
[see
also
IEEE
Intelligent
Systems]
,
Volume:
9
Issue:
2
,
Apr
1994
Algorithmic
research
problems
in
molecular
bioinformatics
Lengauer,
T.;
Theory and Computing Systems, 1993., Proceedings of the 2nd Israel Symposium on the , 7-9 Jun 1993
Page(s): 177 –192
Implementation of a parallel processing system for inference of phylogenetic trees
Matsuda,
H.;
Olsen,
G.J.;
Hagstrom,
R.;
Overbeek,
R.;
Kaneda,
Y.;
Communications, Computers and Signal Processing, 1993., IEEE Pacific Rim Conference on , Volume: 1 ,
19-21
May
1993
Page(s): 280 -283 vol.1
gm:
a
tool
for
exploratory
analysis
of
DNA
sequence
data
Soderlund,
C.;
Shanmugam,
P.;
White,
O.;
Fields,
C.;
System Sciences, 1992. Proceedings of the Twenty-Fifth Hawaii International Conference on , Volume: i , 710
Jan
1992
Page(s): 653 -662 vol.1
Computers
Junhyong
Computer
Page(s): 25 –32
are
,
from
Volume:
Mars,
35
organisms
Issue:
are
7
from
,
July
Venus
Kim;
2002
A
comparative
study
of
genetic
sequence
classification
algorithms
Mukhopadhyay,
S.;
Changhong
Tang;
Huang,
J.;
Mulong
Yu;
Palakal,
M.;
Neural Networks for Signal Processing, 2002. Proceedings of the 2002 12th IEEE Workshop on , 2002
Page(s): 57 –66
Fuzzy
sequence
pattern
matching
in
zinc
finger
domain
proteins
Chang,
B.C.H.;
Halgamuge,
S.K.;
IFSA World Congress and 20th NAFIPS International Conference, 2001. Joint 9th , Volume: 2 , 25-28 July
2001
Page(s): 1116 -1120 vol.2
A
neural-fuzzy
system
for
the
protein
folding
problem
Daugherity,
W.C.;
Industrial Fuzzy Control and Intelligent Systems, 1993., IFIS '93., Third International Conference on , 1-3
Dec
1993
Page(s): 47 –49
Fuzzy
molecular
modeling
Ress,
D.A.;
Intelligent Processing and Manufacturing of Materials, 1999. IPMM '99. Proceedings of the Second
International
Conference
on
,
Volume:
2
,
1999
Page(s): 1225 -1233 vol.2
Using
fuzzy
logic
and
a
hybrid
genetic
algorithm
for
metabolic
modeling
Yen,
J.;
Bogju
Lee;
Liao,
J.C.;
Fuzzy Systems, 1996., Proceedings of the Fifth IEEE International Conference on , Volume: 1 , 8-11 Sep
1996
Page(s): 220 -225 vol.1
Biochemical
metabolic
modeling
using
fuzzy
concepts
Solaiman,
B.;
Picart,
D.;
Engineering in Medicine and Biology Society, 1996. Bridging Disciplines for Biomedicine. Proceedings of
the 18th Annual International Conference of the IEEE , Volume: 5 , 31 Oct-3 Nov 1996
Page(s): 1895 -1896 vol.5
Simulation
of
the
human
glucose
metabolism
using
fuzzy
arithmetic
Hanss,
M.;
Nehls,
O.;
Fuzzy Information Processing Society, 2000. NAFIPS. 19th International Conference of the North American ,
2000
Page(s): 201 –205
Creating metabolic and regulatory network models using fuzzy cognitive maps
Dickerson,
J.A.;
Cox,
Z.;
Wurtele,
E.S.;
Fulmer,
A.W.;
IFSA World Congress and 20th NAFIPS International Conference, 2001. Joint 9th , Volume: 4 , 25-28 July
2001
Page(s): 2171 -2176 vol.4
A
deformable
template
model
based
on
fuzzy
alignment
algorithm
Zhong
Xue;
Dinggang
Shen;
Eam
Khwang
Teoh;
Image Processing, 2000. Proceedings. 2000 International Conference on , Volume: 1 , 2000
Page(s): 296 -299 vol.1
00908856.pdf
Making chips to probe genes
Moore, S.K.
IEEE Spectrum , Volume: 38 Issue: 3 , March 2001
Page(s): 54 –60
00901157.pdf
Harmonizing data, setting standards [genomics, information sets]
Moore, S.K.
IEEE Spectrum , Volume: 38 Issue: 1 , Jan. 2001
Page(s): 111 –112
00880951.pdf
Moore, S.K.
IEEE Spectrum , Volume: 37 Issue: 11 , Nov. 2000
Page(s): 33 –35
00908883.pdf
The human genome project: help wanted
Claverie, J.-M.
IEEE Spectrum , Volume: 38 Issue: 3 , March 2001
Page(s): 9 –9
00506064.pdf
The design and implementation of a database for human genome research
Sargent, R.; Fuhrman, D.; Critchlow, T.; Di Sera, T.; Mecklenburg, R.; Lindstrom, G.; Cartwright, P.
Scientific and Statistical Database Systems, 1996. Proceedings., Eighth International Conference on , 1996
Page(s): 220 –225
00473262.pdf
Informatics and the Human Genome Project
Robbins, R.J.; Benton, D.; Snoddy, J.
IEEE Engineering in Medicine and Biology Magazine , Volume: 14 Issue: 6 , Nov.-Dec. 1995 Page(s): 694 –
701
00473270.pdf
Brief guide to information resources supporting the Human Genome Project
Smith, R.F.
IEEE Engineering in Medicine and Biology Magazine , Volume: 14 Issue: 6 , Nov.-Dec. 1995 Page(s): 760 –
761
00471028.pdf
Internet: a computer support tool for building the human genome
Stolov, S.E.
Electro/95 International. Professional Program Proceedings. , 1995
Page(s): 441 –452
00270611.pdf
Protein modeling using hidden Markov models: analysis of globins
Haussler, D.; Krogh, A.; Mian, I.S.; Sjolander, K.
System Sciences, 1993, Proceeding of the Twenty-Sixth Hawaii International Conference on , 1993 Page(s):
792 -802 vol.1
00375338.pdf
Parameterization studies of hidden Markov models representing highly divergent protein sequences
McClure, M.A.; Raman, R.
System Sciences, 1995. Vol.1 Proceedings of the Twenty-Eighth Hawaii International Conference on , 1995
Page(s): 184 -194 vol.5
00810222.pdf
Application of hidden Markov models to gene prediction in DNA
Yin, M.M.; Wang, J.T.L.
Information Intelligence and Systems, 1999. Proceedings. 1999 International Conference on , 1999 Page(s):
40 –47
00684438.pdf
Statistical Analysis Of DNA strructure Based On Markov Chains
Kleffe, J.
Engineering in Medicine and Biology Society, 1991. Vol.13: 1991., Proceedings of the Annual International
Conference of the IEEE , 1991 Page(s): 1253 –1254
Dimitris Anastassiou
D. Anastassiou, "Frequency-Domain analysis of Biomolecular Sequences," Bioinformatics, vol. 16, no.12,
December 2000, pp. 1073-1081.
D. Anastassiou, "Genomic Signal Processing", IEEE Signal Processing Magazine, magazine theme article,
July 2001.
D. Anastassiou, "DSP in Genomics", Proceedings, IEEE International conference ICASSP 2001, Salt Lake
City, Utah, May 2001.
D. Anastassiou, "Digital Signal Processing of Biomolecular Sequences", Technical Report EE000420-1, April
2000.
01188714.pdf
The hardware implementation of a genetic algortihm model with FPGA
Tu Lei; Ming-cheng Zhu; Jing-xia Wang;
Field-Programmable Technology, 2002. (FPT). Proceedings. 2002 IEEE International Conference on , 2002
Page(s): 374 -377
00813435.pdf
FPGA implementation of four-step genetic search algorithm
So, M.F.; Wu, A.;
Electronics, Circuits and Systems, 1999. Proceedings of ICECS '99. The 6th IEEE International Conference
on , Volume: 2 , 5-8 Sep 1999
Page(s): 1143 -1146 vol.2
00952370.pdf
Genetic programming in FPGA implementation of addition as a part of the convolution
Jamro, E.; Wiatr, K.;
Digital Systems, Design, 2001. Proceedings. Euromicro Symposium on , 2001
Page(s): 466 -473
01017396.pdf
A hydrophobicity based neural network method for predicting transmembrane segments in protein sequences
Zhongqiang Chen; Qi Liu; Yisheng Zhu; Yixue Li; Yuhong Xu;
Engineering in Medicine and Biology Society, 2001. Proceedings of the 23rd Annual International
Conference of the IEEE , Volume: 3 , 2001
Page(s): 2899 -2902
01005467.pdf
A Kohonen self-organizing map for the functional classification of proteins based on one-dimensional
sequence information
Pollock, R.; Lane, T.; Watts, M.;
Neural Networks, 2002. IJCNN '02. Proceedings of the 2002 International Joint Conference on , Volume: 1 ,
2002 Page(s): 189 -192
00183932.pdf
Bayesian classification of protein structural elements
Hunter, L.; States, D.J.;
System Sciences, 1991. Proceedings of the Twenty-Fourth Annual Hawaii International Conference on ,
Volume: i ,8-11 Jan 1991 Page(s): 595 -604 vol.1
00323570.pdf
A protein family classification method for analysis of large DNA sequences
Henikoff, S.; Henikoff, J.G.;
System Sciences, 1994. Vol.V: Biotechnology Computing, Proceedings of the Twenty-Seventh Hawaii
International Conference on , 4-7 Jan 1994 Page(s): 265 -274
00565047.pdf
Protein structure classification by structural transformation
Ohkawa, T.; Namihira, D.; Komoda, N.; Kidera, A.; Nakamura, H.;
Intelligence and Systems, 1996., IEEE International Joint Symposia on , 4-5 Nov 1996 Page(s): 23 -29
00934277.pdf
Classification and function estimation of protein by using data compression and genetic algorithms
Chiba, S.; Sugawara, K.; Watanabe, T.;
Evolutionary Computation, 2001. Proceedings of the 2001 Congress on , Volume: 2 , 2001
@techreport{ krogh93hidden,
author = "Anders Krogh and Michael Brown and I. Saira Mian and Kimmen Sjolander and David
Haussler",
title = "{HIDDEN} {MARKOV} {MODELS} {IN} {COMPUTATIONAL} {BIOLOGY}:
{APPLICATIONS} {TO} {PROTEIN} {MODELING}",
number = "UCSC-CRL-93-32",
year = "1993",
url = "citeseer.nj.nec.com/krogh93hidden.html" } 05/12/02
@techreport{ krogh94hidden,
author = "Anders Krogh and I. Saira Mian and David Haussler",
title = "A {HIDDEN} {MARKOV} {MODEL} {THAT} {FINDS} {GENES} {IN} {E}. {COLI}
{DNA}",
number = "UCSC-CRL-93-33",
year = "1994",
url = "citeseer.nj.nec.com/article/krogh94hidden.html" } 05/12/02
@article{ hughey96hidden,
author = "R. Hughey and A. Krogh",
title = "Hidden Markov models for sequence analysis: extension and analysis of basic method.",
journal = "Comp. Appl. BioSci",
volume = "12",
number = "2",
pages = "95--108",
year = "1996",
url = "citeseer.nj.nec.com/richard96hidden.html" } 05/12/02
@misc{ grundy97metameme,
author = "W. Grundy and T. Bailey and C. Elkan and M. Baker",
title = "MetaMEME: Motif-based hidden Markov models of protein families",
text = "Grundy, W. N., T. L. Bailey, C. P. Elkan and M. E. Baker. MetaMEME: Motif-based
hidden Markov models of protein families. CABIOS, 1997. To appear. Grundy,
W. N., T. L. Bailey, C. P. Elkan and M. E. Baker. Hidden Markov model analysis
of motifs in steroid dehydrogenases and their homologs. BBRC, 231(3):760-766,
1997.",
year = "1997",
url = "citeseer.nj.nec.com/grundy97metameme.html" } 05/12/02
@misc{ grundy-hidden,
author = "William N Grundy and Timothy L Bailey and Charles P Elkan and Michael E
Baker",
title = "Hidden Markov Model Analysis of Motifs in Steroid Dehydrogenases and their
Homologs",
url = "citeseer.nj.nec.com/grundy97hidden.html" } 05/12/02
@misc{ karplus98hidden,
author = "K. Karplus and C. Barrett and R. Hughey",
title = "Hidden markov models for detecting remote protein homologies",
text = "Kevin Karplus, Christian Barrett, and Richard Hughey. Hidden markov models
for detecting remote protein homologies. Bioinformatics, 14(10):846--856,
1998.",
year = "1998",
url = "citeseer.nj.nec.com/article/karplus99hidden.html" } 05/12/02
@inproceedings{ haussler93protein,
author = "David Haussler and Andrews Krogh and I. Saira Mian and Kimmen Sjolander",
title = "Protein Modeling using Hidden {M}arkov Models: Analysis of Globins",
booktitle = "Proceedings of the 26th Hawaii International Conference on System Sciences",
publisher = "IEEE Computer Society Press",
address = "Honolulu",
pages = "792--802",
year = "1993",
01188714.pdf
The hardware implementation of a genetic algortihm model with FPGA
Tu Lei; Ming-cheng Zhu; Jing-xia Wang;
Field-Programmable Technology, 2002. (FPT). Proceedings. 2002 IEEE International Conference on , 2002
Page(s): 374 -377
00813435.pdf
FPGA implementation of four-step genetic search algorithm
So, M.F.; Wu, A.;
Electronics, Circuits and Systems, 1999. Proceedings of ICECS '99. The 6th IEEE International Conference
on , Volume: 2 , 5-8 Sep 1999
Page(s): 1143 -1146 vol.2
00952370.pdf
Genetic programming in FPGA implementation of addition as a part of the convolution
Jamro, E.; Wiatr, K.;
Digital Systems, Design, 2001. Proceedings. Euromicro Symposium on , 2001
Page(s): 466 -473
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