GENERAL BIOLOGY CLASSES Mendelian Genetics Lab Activity PRE-LAB QUESTIONS (Students may not begin the lab activity until these are completed and submitted.) 1. Name each of Mendel’s Laws, and explain what each one means in common English. 2. Draw and correctly label a Punnett square for the following situation: One parent plant is homozygous for the dominant seed shape (round seeds), While the other parent is heterozygous for the same trait. 3. In the above Punnett Square, give the physical traits (phenotype) for all four possible outcomes. 4. It is possible, and often happens, that two parents with brown eyes could produce a child with blue eyes. Draw a Punnett Square illustrating this outcome, and compute the odds that it might happen. 5. Following is a partially completed Punnett square for a dihybrid cross. In it, both parents have brown eyes, but carry the recessive trait for SMA (spinal muscular atrophy – a rare genetic disorder). Complete the square. Compute the odds of having a child with blue eyes. Compute the odds of having a child with blue eyes and SMA. Compute the odds of having a child with brown eyes and SMA SHOW ALL MATH! B = brown eyes; N = normal Central Nervous System development; b = blue eyes n = spinal muscular atrophy FATHER BN M BN O T Bn H E bN R bn Bn bN bn LAB ACTIVITY - EXPLORING GENETIC PROBABILITY INTRODUCTION: WHEN A COIN IS TOSSED, IT CAN REALISTICALLY LAND IN ONLY ONE OF TWO POSITIONS — EITHER HEADS UP OR TAILS UP. WE HAVE LEARNED THAT IN A SIMILAR WAY, EITHER THE MATERNAL GENE FOR A TRAIT OR THE CORRESPONDING PATERNAL ALLELE MAY BE TRANSFERRED TO A SINGLE SPERM OR EGG CELL — BUT NOT BOTH. IF THE PARENT IS HETEROZYGOUS (IF HE OR SHE HAS 2 DIFFERENT COPIES OF A GIVEN ALLELE), A GAMETE MAY CARRY CODING ONLY FOR THE DOMINANT TRAIT OR ITS RECESSIVE COUNTERPART. THE MATHEMATICIAN DESCRIBES THIS SITUATION BY SAYING THAT THE PROBABILITY OF ONE ALLELE (OR COIN) ENDING UP EITHER WAY IS 50%, 0.5, OR 1/2. (MENDEL SUMMARIZED THIS IN HIS "LAW OF SEGREGATION.") IN THIS LAB ACTIVITY, COINS REPRESENTING EACH TRAIT WILL BE FLIPPED IN PAIRS. EACH COIN STANDS FOR A CHOICE BETWEEN TWO ALLELES THAT MAY BE CARRIED BY A SINGLE GAMETE (SPERM OR EGG CELL). TWO GAMETES THEN UNITE INTO A ZYGOTE—THE FIRST SOMATIC CELL OF A NEW ORGANISM. ONE SIDE OF EACH COIN REPRESENTS ONE POSSIBLE ALLELE SENT FROM ONE PARENT. A COMBINATION OF TWO “ALLELES” FROM 2 SEPARATE COINS ARE USED TO DETERMINE THE GENOTYPE AND PHENOTYPE OF THE NEXT GENERATION. TWO IDENTICAL COINS LANDING IN VARIOUS POSITIONS CAN BE USED TO MIMICK THE GENOTYPE AND PHENOTYPE OUTCOMES RECORDED BY MENDEL FOR A SINGLE TRAIT IN A HYBRID CROSS (THE MATING OF TWO HETEROZYGOUS PARENTS.) SIMILARLY, WE MAY USE FOUR COINS (TWO PENNIES AND TWO NICKELS FOR EXAMPLE) TO TEST THE GENOTYPE AND PHENOTYPE RATIOS WHICH RESULT FROM A DIHYBRID CROSS - THE MATING OF PARENTS WHO ARE HETEROZYGOUS FOR EACH OF TWO DIFFERENT TRAITS. THIS INVESTIGATION SHOWS THAT PROBABILITY IS STRONGLY RELATED TO GENETIC OUTCOMES. OUR DATA MAY EITHER SUPPORT OR CHALLENGE THE 19TH CENTURY DATA AND CONCLUSIONS OF GREGOR MENDEL. PLEASE NOTE: YOUR HYPOTHESIS MUST BE DIRECTLY RELATED TO THE RESEARCH CONDUCTED BY MENDEL. MATERIALS: PENNIES AND NICKELS; PERMANENT MARKER; PENCIL OR PEN; DATA RECORDING CHARTS DIRECTIONS: PART A (USE TABLE A TO ORGANIZE THE DATA.) IN PEA-PLANT FLOWERS, THE COLOR PURPLE (P) IS DOMINANT OVER WHITE (p). 1. COMPLETE A PUNNETT SQUARE FOR TWO HETEROZYGOUS PARENTS. YOUR SQUARE SHOULD REFLECT THE CLASSIC 1: 2: 1 (0.25: 0.50: 0.25) GENOTYPE PROBABLITY IN A HETEROZYGOUS CROSS FOR THIS TRAIT. (MENDEL OBSERVED THIS OUTCOME MANY TIMES DURING HIS TESTING; RESULTS WERE REPEATED WITH GREAT PRECISION.) THIS IS THE FIRST OUTCOME WE WILL EXAMINE. DURING OUR COIN FLIPS: A HEADS-HEADS COMBINATION WILL REPRESENT A HOMOZYGOUS-DOMINANT OUTCOME (PURPLE FLOWER - LABEL THE TOP BOX IN THE LEFT COLUMN OF YOUR TABLE ACCORDINGLY); A HEADS-TAILS COMBINATION WILL STAND FOR A HETEROZYGOUS OUTCOME (PURPLE FLOWER - LABEL THE SEC0ND BOX IN THE LEFT COLUMN OF YOUR TABLE TO REFLECT THIS); A TAILS-TAILS COMBINATION WILL REPRESENT A HOMOZYGOUS-RECESSIVE OUTCOME (WHITE FLOWER - LABEL THE LAST BOX IN THE LEFT COLUMN OF YOUR TABLE TO REFLECT THIS). 2. YOU WILL COMPLETE 100 FLIPS OF TWO COINS. USE 2 PENNIES. 3. BEFORE YOU START, RECORD THE "EXPECTED OUTCOME" IN THE APPROPRIATE COLUMN OF THE TABLE. (BE CAREFUL; REMEMBER THAT THERE ARE TWO DIFFERENT WAYS FOR TWO PENNIES TO LAND "HEADS-TAILS." 2 (0.25) = 0.50 ) 4. AS THE EXPERIMENT PROGRESSES, MAKE APPROPRIATE HASH-MARKS IN EACH BOX. 5. WHEN YOU FINISH, DIVIDE THE RESULTS OF EACH GENOTYPE BY THE TOTAL OF TOSSES (100) TO OBTAIN THE “EXPERIMENTAL OUTCOME.” PART B - A DIHYBRID CROSS This part of the lab activity is NOT required—it is extra credit—for general biology classes. IN PART B - AND IN TABLE B - WE WILL REPEAT THE ABOVE EXPERIMENT, THIS TIME USING FOUR COINS TO EXAMINE A DIHYBRID CROSS. THIS TIME, HOWEVER, WE WILL COMPLETE 200 FLIPS. BECAUSE WE ARE LOOKING AT 2 TRAITS, THIS TIME WE WILL NEED 2 DIFFERENT COINS FOR EACH PARENT. ONE COIN WILL REPRESENT EACH OF THE 2 TRAITS CONTRIBUTED BY THAT PARENT. THERE ARE 2 SIDES TO EACH COIN, AND 2 POSSIBLE OUTCOMES FOR EACH TRAIT, BECAUSE EACH HETEROZYGOUS PARENT CARRIES 2 DIFFERENT ALLELES FOR THE TRAIT. ANY 1 OF 4 POSSIBLE COMBINATIONS MAY THEREFORE TURN UP IN ANY SINGLE SPERM CELL OR EGG CELL — AND THUS THERE ARE 16 POSSIBLE OUTCOMES WHEN THE EGG AND SPERM (GAMETES) EVENTUALLY MEET. IN CORN PLANTS: ROUGH SEED SHAPE (R) IS DOMINANT OVER SMOOTH SEED SHAPE (r) AND YELLOW SEEDS (Y) ARE DOMINANT OVER WHITE SEEDS (y). 1. CREATE A PUNNETT SQUARE. DETERMINE THE 4 POSSIBLE GAMETES PRODUCED BY EITHER PARENT. THEN, DETERMINE THE POSSIBLE SEED SHAPE AND COLOR OF ALL OFFSPRING WHOSE PARENTS ARE EACH HETEROZYGOUS FOR THE TWO TRAITS. 2. OBTAIN TWO PENNIES AND TWO NICKELS. LABEL THE HEADS SIDE OF BOTH PENNIES "R" AND THE TAILS "r." LABEL THE HEADS SIDE OF BOTH NICKELS "Y" AND THE TAILS "y." 3. LABEL THE SECOND COLUMN OF THE TABLE (BELOW COIN COMBINATION) WITH THE CORRECT GENOTYPE(S). 4. LABEL EACH BOX IN THE FIRST COLUMN OF THE DATA TABLE. "PHENOTYPE" SHOULD REFLECT THE OUTCOMES IN YOUR PUNNETT SQUARE. 5. ENTER DATA IN THE "EXPECTED PROBABILITY" COLUMN FOR EACH GENOTYPE. COUNT UP THE BOXES IN THE PUNNETT SQUARE THAT MATCH EACH GENOTYPE. REMEMBER THAT SOME OF THE ALLELES IN YOUR DATA TABLE MAY BE PRODUCED IN MORE THAN ONE WAY (FOR EXAMPLE, THERE ARE TWO DIFFERENT WAYS TO PRODUCE "HEADS-TAILS" IN THE FLIPPED PENNIES, AND TWO DIFFERENT WAYS TO PRODUCE "HEADS-TAILS" IN THE NICKELS) (NUMBER OF PUNNET SQUARE BOXES THAT MATCH ONE GENOTYPE) . = (16) PROBABILITY OF THAT OUTCOME. 6. TOSS THE COINS 200 TIMES. RECORD THE RESULTS OF EACH TOSS USING HASH MARKS. WHEN YOU FINISH, DIVIDE EACH RESULT BY THE TOTAL (200) TO OBTAIN THE EXPERIMENTAL PROBABILITY THE OUTCOME OF THIS ACTIVITY. OBSERVATIONS AND CONCLUSIONS: 1. HOW CLOSELY DID YOUR DATA RESEMBLE THE EXPECTED PROBABILITY FOR THE MONOHYBRID CROSS? DO YOUR DATA SUPPORT THE DATA AND CONCLUSIONS PUBLISHED BY MENDEL? 2. DO YOUR DATA MORE CLOSELY MATCH MENDEL’S FOR THE DIHYBRID CROSS THAN THEY DID IN PART A (A MONOHYBRID CROSS?) WHATEVER YOUR ANSWER, EXPLAIN WHY YOU OBTAINED THE OUTCOME YOU DID. (WHY DO THE DATA FROM PART B MATCH MENDEL’S MORE CLOSELY—OR LESS CLOSELY—THAN THE MONOHYBRID CROSS IN PART A?) 3. STUDENTS ALMOST NEVER OBTAIN A PERFECT MATCH FOR THE EXPECTED OUTCOMES. WHY DO YOU THINK THIS IS SO? 4. IF YOU INCREASED THE NUMBER OF COIN FLIPS TO 500 OR 1000, DO YOU THINK YOUR DATA WOULD MORE CLOSELY OR LESS CLOSELY MATCH MENDEL’S RESULTS? WHY? 5. EXTRA CREDIT: COMLETE A PUNNETT SQUARE FOR ANY TRI-HYBRID CROSS DATA TABLE A—MONOHYBRID CROSS Phenotype Coin Combination PENNY HEADS PENNY HEADS GENOTYPE(S) PENNY HEADS PENNY TAILS GENOTYPE(S) PENNY TAILS PENNY TAILS GENOTYPE(S) Tally Expected probability Experimental outcome DATA TABLE B Phenotype Rough, Yellow seeds Coin Combination PENNY HEADS PENNY HEADS GENOTYPE(S) RR only PENNY HEADS PENNY HEADS GENOTYPE(S) RR only PENNY HEADS PENNY TAILS GENOTYPE(S) Rr or rR PENNY HEADS PENNY TAILS GENOTYPE(S) Rr or rR PENNY HEADS PENNY HEADS GENOTYPE(S) RR only PENNY HEADS PENNY TAILS GENOTYPE(S) Rr or rR PENNY TAILS PENNY TAILS GENOTYPE(S) rr only PENNY TAILS PENNY TAILS GENOTYPE(S) rr only PENNY TAILS PENNY TAILS GENOTYPE(S) rr only NICKEL HEADS Tally NICKEL HEADS GENOTYPE(S) YY only NICKEL HEADS NICKEL TAILS GENOTYPE(S) Yy or yY NICKEL HEADS NICKEL TAILS GENOTYPE(S) Yy or yY NICKEL HEADS NICKEL HEADS GENOTYPE(S) YY only NICKEL TAILS NICKEL TAILS GENOTYPE(S) yy only NICKEL TAILS NICKEL TAILS GENOTYPE(S) yy only NICKEL HEADS NICKEL HEADS GENOTYPE(S) YY only NICKEL HEADS NICKEL TAILS GENOTYPE(S) Yy or yY NICKEL TAILS NICKEL TAILS GENOTYPE(S) yy only Expected probability Experimental probability (Outcome) 1 16 = 0.0625 (tally) 200 =