Team 5
You will compare African American (A) with Native American (Nuu-Chah-Nulth, B)
populations.
Enter Sequence Server  Manage Groups  Sequence sources:  Modern Human mtDNA
Check African American mtDNA and mtDNA, then click Ok.
Uncheck the checkboxes.
Click African American #1, click None, and set that window to a second representative for
this same group (such as African American #2).
Click Blackfoot #1, find Nuu-Chah-Nulth, and select a sample (such as Nuu-chah-Nulth
#1).
Underneath, click None and select a second representative for this group (such as Nuuchah-Nulth #3).
In order to compare (align) the sequences for two individuals check their checkboxes.
Then click COMPARE.
Wait for the result page to come up (this may take a couple of minutes).
Determine the number of differences between the two sequences, multiply by 100% and
divide by the number nucleotides you were reasonably able to compare. This will provide
you with the normalized number of differences for this alignment.
Workflow:
 Compare two individuals for the African American group chosen (e.g. African
American #2 and African American #3)
 Compare two individual for the Native American group chosen (e.g. Nuu-chah-Nulth
#1 with Nuu-chah-Nulth #3)
 Compare one individual from the African American group with one individual from
the Native American group (e.g. African American #3 with Nuu-chah-Nulth #1)