Official Policy Manual of the Interdisciplinary Molecular Biosciences Ph.D. Program Section Goals of the Program Admission Retention Graduation Curriculum Dissertation Topic and Committee Composition Page 1 2 3 4 5 9 The Molecular Biosciences (MOBI) Ph.D. Program is an interdisciplinary program that focuses on the study of biological problems at the molecular level using chemical, computational, mathematical, physical, and statistical approaches as well as conventional biological approaches. A number of faculty from the Departments of Biology, Chemistry, Mathematical Sciences, and Physics and Astronomy participate in the program, which offers students a truly diverse education. Faculty participants are engaged in a variety of research areas: Biochemistry Biotechnology Cell Biology Ecology Environmental Toxicology Evolutionary Biology Immunology Microbiology Molecular Modeling Structural Biology Goals of the MOBI Ph.D. Program 1. To provide rigorous academic preparation for the study of molecular processes of biological systems at an advanced level. This preparation will enable a MOBI Ph.D. Program graduate to compete for future employment in academia, government, and/or industry. 2. To develop in-depth research ability in a specific area within the sub-disciplines of molecular biosciences. This will be accomplished initially by engaging students in bench research with faculty mentors and later by requiring them to conduct in-depth research as independent scientists who contribute original knowledge to the discipline and successfully complete a dissertation. 3. To develop the ability to communicate scientific concepts to others through writing as demonstrated by presenting the results of research at scientific conferences and symposia and by submitting manuscripts to scientific journals. 4. To develop and nurture the skills that will lead to excellence in classroom and laboratory teaching as future faculty members. Each student in MOBI will enroll in core-curriculum coursework that will bring knowledge from a variety of disciplines to the study of biological systems to develop scientific knowledge and communication skills. Coupled with focused research, this program of study is consistent with the philosophy of the nationally recognized “Preparing Future Faculty” program (www.preparing-faculty.org), the “Reshaping the Graduate Education of Scientists and Engineers” report of the National Academy of Sciences (www.nap.edu/catalog/4935.html), and the model Ph.D. programs proposed by the National Science Foundation (NSF) through its funding program entitled “Integrative Graduate Education and Research Traineeship Program” (IGERT). As in IGERT-funded programs, graduates of this Ph.D. in MOBI, armed with technical, professional, and communication skills plus a deep knowledge in their chosen disciplines, will be prepared to pursue productive research careers in academia, government, and industry. The program specifically emphasizes the rigorous training of students to enable them to understand the interaction between observation, experimentation, and theory that is fundamental to all science. The scope and structure of the MOBI Ph.D. Program encompass the standards emphasized for Ph.D. degrees in molecular biosciences published in the 2006 report of the Committee on Education of the International Union of Biochemistry and Molecular Biology. This report states “Molecular Biosciences (PhD’s) that apply chemical, physical, and molecular biological methods and principles to the solution of biological problems are among the most vigorous and productive areas of scientific development” (www.iubmb.org). Admission Admissions will be based on a comprehensive assessment of an applicant’s qualifications including Graduate Record Examination (GRE) test scores, undergraduate and graduate grade point average, and letters of recommendation. Applicants must: 1. Formally apply for admission to the College of Graduate Studies (CGS) and fulfill all requirements. For international students, this includes meeting CGS requirements for proof of English-language proficiency, which may be accomplished by submission of TOEFL, IELTS or UMELI test scores that meet CGS requirements or by successful completion of level 112 of ELS coursework. Please note that international students who wish to be awarded a graduate teaching assistantship (GTA) must either score a 26 on the Speaking subscale of TOEFL or a 6.5 on the Speaking subscale of IELTS. 2. Hold an appropriate baccalaureate, master’s, or prior doctoral degree in either Biochemistry, Biology, or Chemistry. An equivalent degree in a closely related subject may be acceptable upon consideration by the program faculty. In addition, the following undergraduate courses are specifically recommended: six semesters of a combination of general biology, microbiology, cell biology, genetics, and biochemistry courses, including some laboratory coursework; two semesters of general/inorganic chemistry and at least one semester of organic chemistry, which should include a laboratory component; two semesters of physics; and one semester of calculus. Students who lack any component of these minimum course requirements will be asked to remedy their deficiency or demonstrate competency in these areas; additional hours may be required for completion of the degree program based upon an assessment of the applicant’s prior preparation in the sciences. A student entering with a prior doctoral degree will be 1 treated the same as a student entering with a prior master’s degree (i.e., only relevant courses from the prior doctoral degree may be considered for credit toward the MOBI Ph.D. degree). 3. Have a grade point average (GPA) in their previous academic degrees that indicates potential for success in doctoral-level study. Successful applicants typically present a minimum 3.5 GPA at the graduate level or a minimum 3.0 GPA when entering with a bachelor’s degree. 4. Submit scores for the verbal, quantitative and analytical writing measures of the Graduate Record Examination (GRE) that indicate potential for success in the MOBI Ph.D. Program. The GRE is an important measure and is given significant consideration in the admissions review process. Successful applicants typically have scores on the verbal and quantitative measures at or above the 50th percentile for persons intending to pursue graduate study in science. 5. Provide letters of recommendation directly from at least three professors or professionals that address the candidate’s potential for successfully completing a Ph.D. in MOBI. 6. Apply by January 15 if they wish to be considered for graduate assistantships for the following fall. Late applications may be considered, but financial support is not guaranteed. Applicants who do not meet these minimums but whose application materials indicate high potential for success may be admitted conditionally and would have to meet the conditions of their admission in the time stated to remain in the program of study. Retention Students must meet the expectations of the University in terms of adequate progress toward the degree. Specifically: 1. Students are expected to maintain a 3.25 or higher grade point average for all graduate coursework. 2. All courses in which the student enrolls must be completed with a grade of B or better in each. 3. Students may not enroll for more than one semester before full admission is granted. 4. Students must complete and submit a degree plan by the time two semesters are completed. 5. Students are expected to continuously enroll and complete coursework in their area of study, making continuous progress toward attainment of the degree. During the Fall and 2 Spring semesters, students must be enrolled for a minimum of 6 credit hours. During the Summer semester, students must be enrolled for a minimum of 3 credit hours, but graduate assistants enrolling in fewer than 5 graduate credit hours will have Social Security and Medicare taxes deducted from their monthly stipends. After students complete all of the courses listed in their degree plans, they are only required to register for 1 credit hour of MOBI 7640 Dissertation Research each semester until they graduate; email notification that they have reached this point in their program of study should be sent from the graduate program director to the College of Graduate Studies. 6. The preliminary exam will consist of a written grant based proposal and an oral presentation of the proposal that constitutes the student’s dissertation research objectives and should be completed by the end of the Summer semester of Year 2. Students will be given two attempts to pass the preliminary exam; the second attempt must occur no later than the end of the Fall semester of Year 3. Students who do not pass on the second attempt will be allowed to continue in the program through the end of the Spring semester of Year 3. At that point, a student who has failed both attempts of the preliminary exam will be given the option of enrolling into the master’s program in either the Department of Biology or Chemistry. Relevant coursework taken toward the Ph.D. in MOBI will be transferred and substituted with permission of the department chair. If a student is admitted into the master’s program in a department, the student must satisfy all of the requirements of that degree to be awarded a master’s degree. 7. At least two thirds of the student’s program of study must be taken at the 7000 level. 8. Successful defense of the dissertation will require the approval of all committee members. Graduation Because the aim of the MOBI Ph.D. Program is to produce graduates who are fully prepared to pursue research careers in academia, industry, and at national labs, the MOBI Ph.D. program requires a series of benchmarks to be accomplished as the student progresses along the path to graduation. These minimum benchmarks fall into three specific categories. Students must: 1. Present at least two research presentations at regional, national or international meetings as the lead or co-author. 2. Be lead author or make significant contribution as co-author of two articles published, in press, or under review in high-quality, peer-reviewed journals. 3. In collaboration with an MTSU faculty member serving as principal investigator, make a significant contribution to the development of at least one external grant proposal. 3 Although some of these expectations would be realized naturally in the course of a student’s progress towards the Ph.D., the MOBI Ph.D. Program at MTSU makes them explicit to emphasize to incoming students the expectation that they will become actively engaged in the research process. Publications and presentations are already recognized as standard metrics of research progress. The involvement of Ph.D. students in the proposal writing process is a developing trend designed to train graduates to be more effectively prepared for jobs in the research environment. Experience in proposal writing is both a necessary skill and an important insight into the manner in which science and engineering are funded. A student’s progress on the benchmarks will be reviewed annually with his or her advisor and/or dissertation committee. Curriculum A. Total Credits Required for Graduation: Curriculum Component Core Courses Electives Special Topics & Seminars Directed Research Dissertation TOTAL 76 credit hours post-baccalaureate* Hours Required 28 14 16 6 12 76 * Students entering with a master’s degree in a science discipline may have up to 16 graduate credit hours of previous coursework applied after determination that the content of the courses is directly equivalent to existing courses in the MOBI Ph.D. Program curriculum. This application is made at the recommendation of the student’s graduate coordinator and with the approval of the graduate dean. Students entering the Ph.D. program who lack specific prerequisite courses will be required to complete those courses as part of their program of study in addition to degree requirements. B. Core Courses – Total Credits: 28 hours The MOBI Ph.D. Program has, at its foundation, a core of courses drawn from multiple scientific disciplines whose focus is the understanding of and ability to use the basic tools of discovery at the cellular and molecular level of biology. Students whose research requires additional courses in a particular subject area, such as statistics, can obtain them by taking them as electives. BIOL 6380 BIOL 6390 BIOL 7760 CHEM 6500 CHEM 6510 MOBI 7010 MOBI 7100 Experimental Immunology Advanced Cell and Molecular Biology Bioinformatics Biochemistry I Biochemistry II Lab Rotation Research Ethics 4 credit hours 4 credit hours 4 credit hours 3 credit hours 3 credit hours 4 credit hours 3 credit hours 4 STAT 7020 Introduction to Biostatistics 3 credit hours Because MOBI is an interdisciplinary program and the core courses cannot necessarily meet the educational requirements of all disciplines in molecular biosciences, students may (with the permission of their dissertation committee) substitute two courses in the core with two courses from the electives as long as the total hours of the core courses that they take remains 28 hours. C. Electives – Total Credits: 14 hours Each student, in consultation with his/her advisor and dissertation committee, will complete at least 14 hours of elective coursework from the courses listed below. Other courses not listed below may be substituted with approval of the student’s advisor and dissertation committee. BIOL 6220 BIOL 6270 BIOL 6290 BIOL 6330 BIOL 6360 BIOL 6410 BIOL 6430 BIOL 6440 BIOL 6450 BIOL 6590 BIOL 6720 BIOL 6730 BIOL 6750 BIOL 6770 BIOL 6780 BIOL 7010 CHEM 6100 CHEM 6110 CHEM 6230 CHEM 6300 CHEM 6520 CHEM 6530 CHEM 6610 CHEM 6720 CHEM 7110 CHEM 7510 CHEM 7710 MOBI 7200 MOBI 7654 PHYS 7010 STAT 6604 Speciation Cell Metabolism Advanced Scanning Electron Microscopy Principles of Physiology Energy Dispersive X-Ray Theory & Anal. Adv. Transmitting Electron Microscopy Clinical & Pathogenic Microbiology Advanced Virology Advancements in Molecular Genetics Environmental Toxicology Advanced Animal Development Advanced Microbial Phys. & Biochemistry Advanced Plant Biotechnology Issues in Biotechnology Principles of Systematics Analysis of Genetic Markers Intermediate Organic Chemistry Topics in Organic Chemistry Intermediate Analytical Chemistry Intermediate Physical Chemistry Topics in Biochemistry Biochemical Techniques Environmental Soil Chemistry Surface Characterization of Nanomaterials Advanced Topics in Organic Chemistry Advanced Biochemistry Topics in Applied Chemistry Biomolecular Modeling and Simulation Professional Seminar Biophysics Experimental Design 3 credit hours 3 credit hours 4 credit hours 4 credit hours 1 credit hour 4 credit hours 4 credit hours 4 credit hours 4 credit hours 4 credit hours 4 credit hours 4 credit hours 4 credit hours 2 credit hours 4 credit hours 4 credit hours 3 credit hours 3-6 credit hours 4 credit hours 3 credit hours 3-6 credit hours 2 credit hours 3 credit hours 3 credit hours 3 credit hours 3 credit hours 3 credit hours 3 credit hours 1 credit hour 3 credit hours 3 credit hours 5 MOBI 7654 may be repeated up to three times. D. Special Topics Courses and Seminars: Total Credits: 16 hours Every student will complete a minimum of four special topics courses and four seminars. These are viewed as crucial to staying abreast of this rapidly developing field. MOBI 7300 MOBI 7400 Special Topics in Molecular Biosciences (taken four times) Seminar in Molecular Biosciences (taken four times) 2 credit hours 2 credit hours E. Directed Research: Total Credits: MOBI 7500 Directed Research* 6 hours 1-6 credit hours *Students will enroll in this course prior to their advancement to candidacy. F. Dissertation: Total Credits: 12 hours Every student will be required to undertake, complete, and successfully defend a dissertation. MOBI 7640 Dissertation Research* 1-6 credit hours *Students are only allowed to enroll in this course following successful completion of their preliminary exam (see below) and their advancement to candidacy. G. Residency Requirements: All students in the MOBI Ph.D. program will be expected to complete a minimum of two consecutive semesters of full-time study in residence at MTSU. Only full-time students will be admitted. Example Course Schedule with Important Dates Each student should adhere to the following schedule for completion of his/her coursework and dissertation research: Year 1 – Fall semester MOBI 7010 Lab Rotation CHEM 6500 Biochemistry I STAT 7020 Introduction to Biostatistics MOBI 7300 Special Topics in MOBI MOBI 7400 MOBI Seminar 4 3 3 2 2 Year 1 – Spring semester BIOL 7760 Bioinformatics CHEM 6510 Biochemistry II 4 3 6 MOBI 7100 Research Ethics MOBI 7300 Special Topics in MOBI MOBI 7400 MOBI Seminar 3 2 2 NOTE: By the end of the Spring semester of Year 1, the student must file their degree plan and decide on the composition of their dissertation committee and dissertation topic. Year 1 – Summer semester MOBI 7500 Directed Research in MOBI Year 2 – Fall semester BIOL 6390 Adv. Cell and Molecular Biol. Elective (#1) Elective (#2) MOBI 7300 Special Topics in MOBI MOBI 7400 MOBI Seminar 4 3-4 3-4 2 2 Year 2 – Spring semester BIOL 6380 Experimental Immunology Elective (#3) MOBI 7300 Special Topics in MOBI MOBI 7400 MOBI Seminar 4 3-4 2 2 Year 2 – Summer semester MOBI 7500 Directed Research in MOBI 3 3 NOTE: By the end of Year 2 in the program, the student is expected to complete the preliminary exam. Year 3 – Fall semester Elective (#4) Elective (#5) if necessary MOBI 7640 Dissertation Research 3-4 3-4 3 Year 3 – Spring semester MOBI 7640 Dissertation Research 3-6 Year 3 – Summer semester MOBI 7640 Dissertation Research 3-6 Year 4 – Fall semester MOBI 7640 Dissertation Research 3-6 Year 4 – Spring semester MOBI 7640 Dissertation Research 3-6 Year 4 – Summer semester MOBI 7640 Dissertation Research 3-6 Year 5 – Fall semester MOBI 7640 Dissertation Research 3-6 Year 5 – Spring semester MOBI 7640 Dissertation Research 3-6 NOTE: By the end of the Spring semester of Year 5 (if not earlier), the student should defend his/her dissertation. 7 Dissertation Topic and Committee Composition The candidate’s dissertation topic will incorporate interdisciplinary knowledge of molecular biosciences to address the question(s) posed in his/her research project. The candidate’s dissertation committee will consist of five members. The chair of the committee will be the student’s major professor. Together with the chair, the student will select the other members of the committee, which must include any faculty directly involved with the student’s dissertation. Although the student has one official major professor/committee chair, the student will be expected to have regular contact (approximately once per week) with both the major professor and any faculty directly involved in the dissertation. If the student and the dissertation chair feel that an external committee member from a department not participating in the MOBI Ph.D. program, another university, or a government laboratory can provide additional expertise vital to the dissertation, then this person can serve as a committee member after obtaining adjunct graduate faculty status from the Graduate Council. All faculty serving on a dissertation committee must be members of the graduate faculty, and the Chair of the Committee must be a doctoral-level graduate faculty member. The student and the committee (once formed) will meet to finalize the topic of the dissertation. The dissertation topic will be presented to the committee in the form of a written proposal (4-8 pages). All dissertation topics must reflect the research specialties of the faculty involved. The student and the committee will meet formally once per year to review progress in coursework and research. The committee will make recommendations in both areas at said meetings and will ensure that the student’s research is in continual accordance with the chosen dissertation topic. The committee will administer the preliminary exam; successful completion of this exam requires a simple majority vote of the committee. 8