emi12313-sup-0002-si

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Table S2. Details of the representative locations where MTB have been detected.
Site
Latitude
Longitude
Sample type
Taxonomy of detected
Reference(s)
MTB
South Atlantic 1726
-30.27
3.26
Sediment
Unknown
Petermann and Bleil, 1993
South Atlantic 1720
-29
13.83
Sediment
Unknown
Petermann and Bleil, 1993
South Atlantic 1719
-28.93
14.17
Sediment
Unknown
Petermann and Bleil, 1993
South Atlantic 1718
-28.7
15.21
Sediment
Unknown
Petermann and Bleil, 1993
South Atlantic 1717
-28.21
14.42
Sediment
Unknown
Petermann and Bleil, 1993
South Atlantic 1716
-27.96
14.01
Sediment
Unknown
Petermann and Bleil, 1993
South Atlantic 1712
-23.25
12.81
Sediment
Unknown
Petermann and Bleil, 1993
South Atlantic 1713
-23.22
13.13
Sediment
Unknown
Petermann and Bleil, 1993
*Itaipu Lagoon, Brazil
-22.94977
-43.03406
Water and sediment Alphaproteobacteria
Spring et al., 1998
Araruama Lagoon, Brazil
-22.83333
-42.21667
Water and sediment Deltaproteobacteria
Keim et al., 2004; Abreu et al., 2007
South Atlantic 1708
-20.1
8.97
Sediment
Unknown
Petermann and Bleil, 1993
South Atlantic 1707
-19.7
10.66
Sediment
Unknown
Petermann and Bleil, 1993
South Atlantic 1706
-19.56
11.18
Sediment
Unknown
Petermann and Bleil, 1993
South Atlantic 1705
-19.5
11.38
Sediment
Unknown
Petermann and Bleil, 1993
South Atlantic 1704
-19.41
11.61
Sediment
Unknown
Petermann and Bleil, 1993
South Atlantic 1703
-17.45
11.02
Sediment
Unknown
Petermann and Bleil, 1993
South Atlantic 1702
-6.57
10.32
Sediment
Unknown
Petermann and Bleil, 1993
Moreton Bay, Australia
NA
NA
Sediment
Unknown
Taylor et al., 2001; Taylor and Barry, 2004
Tingalpa Creek, Australia
NA
NA
Sediment
Unknown
Taylor et al., 2001
Irrigation ponds, Australia
NA
NA
Sediment
Unknown
Taylor et al., 2001; Taylor and Barry, 2004
*Yunyue Lake, Hainan, China
19.49829
109.51485
Sediment
Alphaproteobacteria
Lin et al., 2012; Lin et al., 2013
*HSL4, Mangrove swamp, Hainan, China
19.60287
110.79808
Sediment
Alphaproteobacteria
Lin et al., 2012; Lin et al., 2013
1
*HSL2, Mangrove swamp, Hainan, China
19.60299
110.79787
Sediment
Alphaproteobacteria
Lin et al., 2012; Lin et al., 2013
*BMW1, Bamen Bay, Hainan, China
19.60472
110.8
Sediment
Alphaproteobacteria
Lin et al., 2012; Lin et al., 2013
*BMW2, Bamen Bay, Hainan, China
19.61197
110.79465
Sediment
Alphaproteobacteria
Lin et al., 2012; Lin et al., 2013
YLS3, Yuelu Mountain, Changsha, Hunan, China
28.1671
112.93225
Sediment
Alphaproteobacteria
Lin et al., 2012; Lin et al., 2013
*YLS1, Yuelu Mountain, Changsha, Hunan, China
28.17602
112.92961
Sediment
Alphaproteobacteria
Lin et al., 2012; Lin et al., 2013
*YLS2, Yuelu Mountain, Changsha, Hunan, China
28.18264
112.93142
Sediment
Alphaproteobacteria
Lin et al., 2012; Lin et al., 2013
*XJ1, Xiang River, Changsha, Hunan, China
28.20423
112.95373
Sediment
Alphaproteobacteria
Lin et al., 2012; Lin et al., 2013
and Nitrospirae
and
Deltaproteobacteria
*XJ2, Xiang River, Changsha, Hunan, China
28.20463
112.9537
Sediment
Alphaproteobacteria
Lin et al., 2012; Lin et al., 2013
North Lake, China
30.6
114.51667
Sediment
Alphaproteobacteria
Li et al., 2007
Red-colored Pool at Edge of Salton Sea, California, USA
33.1954
-115.6148
Water and sediment Deltaproteobacteria
Lefèvre et al., 2011a
Alamo River near the Salton Sea, California, USA
33.1993
-115.5973
Water and sediment Alphaproteobacteria
Lefèvre et al., 2012a
Lagoon at Salton Sea, California, USA
33.1997
-115.5886
Water and sediment Deltaproteobacteria
Lefèvre et al., 2011a
*A pond in Catalina Island, CA, USA
33.4272
-118.4692
Sediment
Alphaproteobacteria
Lin et al., 2012; Lin et al., 2013
*L1, Marine sediment from Catalina Island, CA, USA
33.42973
-118.50515
Sediment
Alphaproteobacteria
Lin et al., 2012; Lin et al., 2013
*L2, Marine sediment from Catalina Island, CA, USA
33.43001
-118.50524
Sediment
Alphaproteobacteria
Lin et al., 2012; Lin et al., 2013
Zuma Beach, California, USA
34.0143
-118.821
Water and sediment Deltaproteobacteria
Lefèvre et al., 2011a
*Qujiangchi in Xi'an, Shaanxi, China
34.21658
108.97968
Sediment
Lin et al., 2012; Lin et al., 2013
Alphaproteobacteria
and
Deltaproteobacteria
Kameno River, Wakayama prefecture, Japan
NA
NA
Sediment
Deltaproteobacteria
Sakaguchi et al., 2002
*Moat in Xi'an, Shaanxi, China
34.25287
108.92187
Sediment
Alphaproteobacteria,
Lin et al., 2013; Wang et al., 2013
Deltaproteobacteria
and
2
Gammaproteobacteria
*Xingqing Lake in Xi'an, Shaanxi, China
34.25665
108.9793
Sediment
Alphaproteobacteria,
Lin et al., 2012; Lin et al., 2013
Deltaproteobacteria
and Nitrospirae
*Feng He Everglade, Xianyang, Shaanxi, China
34.32771
108.74424
Sediment
Lake Tuendae, California, USA
35.1433
-116.1046
Water and sediment Deltaproteobacteria
Lefèvre et al., 2011a
Kururi, Chiba, Japan
NA
NA
Sediment
Arakaki et al., 2010
A freshwater pond in broadleaf woodland in Tokyo, Japan
NA
NA
Water and sediment Alphaproteobacteria
Thornhill et al., 1995
Koganei ponds, Japan
35.69947
139.50299
Water and sediment Alphaproteobacteria
Kawaguchi et al., 1992; Burgess et al., 1993
Lake Mead, Nevada, USA
36.0461
-114.7965
Water and sediment Deltaproteobacteria
Lefèvre et al., 2011a
Boulder Beach, Lake Mead, Nevada, USA
36.0461
-114.7965
Water and sediment Alphaproteobacteria
Lefèvre et al., 2012a
Badwater Basin in Death Valley National Park, California, USA 36.05
-116.63
Water and sediment Gammaproteobacteria Lefèvre et al., 2012b
Huiquan Bay, China
120.34436
Water and sediment Alphaproteobacteria
36.05624
Alphaproteobacteria
Alphaproteobacteria
Lin et al., 2012; Lin et al., 2013
Pan et al., 2008; Zhou et al., 2013
and
Deltaproteobacteria
Saddle Island, Lake Mead, Nevada, USA
36.0967
-114.8192
Water and sediment Alphaproteobacteria
Lefèvre et al., 2012a
Callville Bay, Lake Mead, Nevada, USA
36.1411
-114.705
Water and sediment Alphaproteobacteria
Lefèvre et al., 2012a
Boulder Beach, Lake Mead, Nevada, USA
36.045664 -114.795628
Water and sediment Nitrospirae
Lefèvre et al., 2011b
Blue Point Spring, Nevada, USA
36.389290 - 114.432961 Water and sediment Nitrospirae
Lefèvre et al., 2011b
Badwater Basin at Death Valley National Park, California, USA 36.2302
-116.7674
Water and sediment Deltaproteobacteria
Lefèvre et al., 2011a
Rogers Spring at Lake Mead, Nevada, USA
36.3774
-114.4438
Water and sediment Deltaproteobacteria
Lefèvre et al., 2011a
Spring at the Corn Creek Field Station, Nevada, USA
36.4389
-115.3589
Water and sediment Alphaproteobacteria
Lefèvre et al., 2012a
Pond near Zion National Park, Utah, USA
37.2399
-113.1497
Water and sediment Alphaproteobacteria
Lefèvre et al., 2011a; 2012a
and
Deltaproteobacteria
Lake Yuehu, China
37.35
122.55
Sediment
3
Deltaproteobacteria
Zhou et al., 2011
Kolob reservoir, Utah, USA
37.4334
-113.0432
Water and sediment Alphaproteobacteria
Lefèvre et al., 2012a
*Intertidal zone, Weihai, Shandong, China
37.5317
122.04657
Sediment
Lin et al., 2012; Lin et al., 2013
Pond near Mono Lake, California, USA
38.0444
-119.0764
Water and sediment Alphaproteobacteria
Alphaproteobacteria
Lefèvre et al., 2011a; 2012a
and
Deltaproteobacteria
Bridgeport Reservoir, California, USA
38.318
-119.2133
Water and sediment Deltaproteobacteria
Lefèvre et al., 2011a
Pyramid Lake, Nevada, USA
39.845
-119.4405
Water and sediment Deltaproteobacteria
Lefèvre et al., 2011a
*Lake Yuyuantan, Beijing, China
39.9152
116.30805
Sediment
Alphaproteobacteria
Lin et al., 2012; Lin et al., 2013
*Lake Beihai, Beijing, China
39.92918
116.38393
Sediment
Alphaproteobacteria
Lin et al., 2012; Lin et al., 2013
and Nitrospirae
Yuandadu park, Beijing, China
39.97436
116.37913
Sediment
Alphaproteobacteria
Lin and Pan, 2009
*Lake Kunming, Beijing, China
39.99487
116.27192
Sediment
Alphaproteobacteria
Lin et al., 2012; Lin et al., 2013
and Nitrospirae
*YM3, Yuanmingyuan, Beijing, China
40.00617
116.29968
Sediment
Alphaproteobacteria
Lin et al., 2012; Lin et al., 2013
*YM2, Yuanmingyuan, Beijing, China
40.00635
116.2974
Sediment
Alphaproteobacteria
Lin et al., 2012; Lin et al., 2013
*YM1, Yuanmingyuan, Beijing, China
40.00895
116.29693
Sediment
Alphaproteobacteria
Lin et al., 2012; Lin et al., 2013
*Lake Miyun, Beijing, China
40.47012
116.92917
Sediment
Alphaproteobacteria
Lin et al., 2012; Lin et al., 2013
and Nitrospirae
Great Boiling Springs, USA
NA
NA
Water and sediment Nitrospirae
Lefèvre et al., 2010
Great Boiling Springs Pool 4, Gerlach, Nevada, USA
40.6616
-119.3665
Water and sediment Deltaproteobacteria
Lefèvre et al., 2011a
Great Boiling Springs Pool 5, Gerlach, Nevada, USA
40.6619
-119.3664
Water and sediment Deltaproteobacteria
Lefèvre et al., 2011a
Great Boiling Springs Pool 6, Gerlach, Nevada, USA
40.6627
-119.3675
Water and sediment Deltaproteobacteria
Lefèvre et al., 2011a
Great Boiling Springs Pool 7, Gerlach, Nevada, USA
40.6651
-119.3628
Water and sediment Deltaproteobacteria
Lefèvre et al., 2011a
*Salt Pond, Woods Hole, Massachusetts, USA
41.53333
-70.61667
Water
Simmons et al., 2004; 2006
Alphaproteobacteria,
Deltaproteobacteria
and
4
Gammaproteobacteria
Salt Pond, Woods Hole, Massachusetts, USA
41.5448
-70.627
Water and sediment Deltaproteobacteria
Lefèvre et al., 2011a
Pettasquamscutt estuary, USA
NA
NA
Water and sediment Alphaproteobacteria
Meldrum et al., 1993
Lake Ely, Pennsylvania, USA
41.7596
-75.8374
Water and sediment Alphaproteobacteria
Lefèvre et al., 2012a
McFarland pond, Ames, USA
NA
NA
Water and sediment Alphaproteobacteria
Schüler et al., 1999
Pointe Rouge, France
43.2406
5.37449
Water and sediment Alphaproteobacteria
Lefèvre et al., 2009
*Lake Chiemsee, Germany
47.86667
12.48333
Water and sediment Alphaproteobacteria,
Spring et al., 1992; 1993; Kolinko et al., 2012; 2013
Nitrospirae
candidate
and
division
OP3
Pond Martinsried, Germany
NA
NA
Sediment
Alphaproteobacteria
Spring et al., 1994
A pool in Tubingen, Germany
NA
NA
Sediment
Alphaproteobacteria
Spring et al., 1994
Stassfurt pond, Germany
NA
NA
Water and sediment Alphaproteobacteria
Flies et al., 2005
Bremen drainage ditch, Germany
NA
NA
Water and sediment Alphaproteobacteria
Flies et al., 2005
Wadden Sea, Germanu
53.89258
8.67608
Sediment
Wenter et al., 2009; Kolinko et al., 2013
Alphaproteobacteria
and
Deltaproteobacteria
River Ryck, Germany
NA
NA
Water and sediment Alphaproteobacteria
Schleifer et al., 1991
*MTB community datasets that are included in the global biogeographic analyses in Fig. 5
NA, not available
References
Abreu, F., Lopes Martins, J., Souza Silveira, T., Neumann Keim, C., Lins De Barros, H.G.P., Gueiros, F.J., and Lins, U. (2007) 'Candidatus Magnetoglobus multicellularis', a
multicellular, magnetotactic prokaryote from a hypersailne environment. Int J Syst Evol Microbiol 57: 1318-1322.
Arakaki, A., Shibusawa, M., Hosokawa, M., and Matsunaga, T. (2010) Preparation of genomic DNA from a single species of uncultured magnetotactic bacterium by
multiple-displacement amplification. Appl Environ Microbiol 76: 1480-1485.
5
Burgess, J.G., Kawaguchi, R., Sakaguchi, T., Thornhill, R.H., and Matsunaga, T. (1993) Evolutionary relationships among Magnetospirillum strains inferred from phylogenetic
analysis of 16S rDNA sequences. J Bacteriol 175: 6689-6694.
Flies, C.B., Jonkers, H.M., de Beer, D., Bosselmann, K., Bottcher, M.E., and Schüler, D. (2005) Diversity and vertical distribution of magnetotactic bacteria along chemical
gradients in freshwater microcosms. FEMS Microbiol Ecol 52: 185-195.
Kawaguchi, R., Burgess, J.G., and Matsunaga, T. (1992) Phylogeny and 16s rRNA sequence of Magnetospirillum sp. AMB-1, an aerobic magnetic bacterium. Nucleic Acids Res
20: 1140.
Keim, C.N., Martins, J.L., Abreu, F., Rosado, A.S., de Barros, H.L., Borojevic, R. et al. (2004) Multicellular life cycle of magnetotactic prokaryotes. FEMS Microbiol Lett 240:
203-208.
Kolinko, S., Jogler, C., Katzmann, E., Wanner, G., Peplies, J., and Schüler, D. (2012) Single-cell analysis reveals a novel uncultivated magnetotactic bacterium within the
candidate division OP3. Environ Microbiol 14: 1709-1721.
Kolinko, S., Wanner, G., Katzmann, E., Kiemer, F., Fuchs, B., and Schüler, D. (2013) Clone libraries and single cell genome amplification reveal extended diversity of
uncultivated magnetotactic bacteria from marine and freshwater environments. Environ Microbiol 15: 1290-1301.
Lefèvre, C.T., Bernadac, A., Yu-Zhang, K., Pradel, N., and Wu, L. (2009) Isolation and characterization of a magnetotactic bacteria from the Mediterranean Sea. Environ
Microbiol 11: 1646-1657.
Lefèvre, C.T., Abreu, F., Schmidt, M.L., Lins, U., Frankel, R.B., Hedlund, B.P., and Bazylinski, D.A. (2010) Moderately thermophilic magnetotactic bacteria from hot springs in
Nevada. Appl Environ Microbiol 76: 3740-3743.
Lefèvre, C.T., Menguy, N., Abreu, F., Lins, U., Pósfai, M., Prozorov, T. et al. (2011a) A cultured greigite-producing magnetotactic bacterium in a novel group of sulfate-reducing
bacteria. Science 334: 1720-1723.
Lefèvre, C.T., Frankel, R.B., Abreu, F., Lins, U., and Bazylinski, D.A. (2011b) Culture-independent characterization of a novel, uncultivated magnetotactic member of the
Nitrospirae phylum. Environ Microbiol 13: 538-549.
Lefèvre, C.T., Schmidt, M.L., Viloria, N., Trubitsyn, D., Schüler, D., and Bazylinski, D.A. (2012a) Insight into the evolution of magnetotaxis in Magnetospirillum spp., based on
mam gene phylogeny. Appl Envir Microbiol 78: 7238-7248.
Lefèvre, C.T., Viloria, N., Schmidt, M.L., Posfai, M., Frankel, R.B., and Bazylinski, D.A. (2012b) Novel magnetite-producing magnetotactic bacteria belonging to the
Gammaproteobacteria. ISME J 6: 440-450.
Li, D., Yang, M., Hu, J.Y., Zhang, J., Liu, R.Y., Gu, X. et al. (2009) Antibiotic-resistance profile in environmental bacteria isolated from penicillin production wastewater
treatment plant and the receiving river. Environ Microbiol 11: 1506-1517.
6
Li, W., Yu, L., Zhou, P., and Zhu, M. (2007) Isolation of magnetotactic bacterium WM-1 from freshwater sediment and phylogenetic characterization. Arch Microbiol 188:
97-102.
Lin, W., and Pan, Y. (2009) Uncultivated magnetotactic cocci from Yuandadu park in Beijing, China. Appl Environ Microbiol 75: 4046-4052.
Lin, W., Wang, Y., Li, B., and Pan, Y. (2012) A biogeographic distribution of magnetotactic bacteria influenced by salinity. ISME J 6: 475-479.
Lin, W., Wang, Y., Gorby, Y.A., Nealson, K.H., and Pan, Y. (2013) Integrating niche-based process and spatial process in biogeography of magnetotactic bacteria. Sci Rep 3:
1643.
Meldrum, F., Mann, S., Heywood, B.R., Frankel, R.B., and Bazylinski, D.A. (1993) Electron microscopy study of magnetosomes in a cultured coccoid magnetotactic bacterium.
Proc R Soc Lond B 251: 231-236.
Munshi, T.K., and Chattoo, B.B. (2008) Bacterial population structure of the jute-retting environment. Microb Ecol 56: 270-282.
Pan, H., Zhu, K., Song, T., Yu-Zhang, K., Lefevre, C., Xing, S. et al. (2008) Characterization of a homogeneous taxonomic group of marine magnetotactic cocci within a low tide
zone in the China Sea. Environ Microbiol 10: 1158-1164.
Petermann, H., and Bleil, U. (1993) Detection of live magnetotactic bacteria in South-Atlantic deep-sea sediments. Earth Planet Sci Lett 117: 223-228.
Sakaguchi, T., Burgess, J.G., and Matsunaga, T. (1993) Magnetite formation by a sulfate-reducing bacterium. Nature 365: 47-49.
Schleifer, K.H., Schüler, D., Spring, S., Weizenegger, M., Amann, R., Ludwig, W., and Kohler, M. (1991) The genus Magnetospirillum gen. nov. description of Magnetospirillum
gryphiswaldense sp. nov. and transfer of Aquaspirillum magnetotacticum to Magnetospirillum magnetotacticum comb. nov. Syst Appl Microbiol 14: 379-385.
Schüler, D., Spring, S., and Bazylinski, D.A. (1999) Improved technique for the isolation of magnetotactic spirilla from a freshwater sediment and their phylogenetic
characterization. Syst Appl Microbiol 22: 466-471.
Simmons, S.L., Sievert, S.M., Frankel, R.B., Bazylinski, D.A., and Edwards, K.J. (2004) Spatiotemporal distribution of marine magnetotactic bacteria in a seasonally stratified
coastal salt pond. Appl Environ Microbiol 70: 6230-6239.
Simmons, S.L., Bazylinski, D.A., and Edwards, K.J. (2006) South-seeking magnetotactic bacteria in the Northern Hemisphere. Science 311: 371-374.
Spring, S., Amann, R., Ludwig, W., Schleifer, K.H., and Petersen, N. (1992) Phylogenetic diversity and identification of nonculturable magnetotactic bacteria. Syst Appl
Microbiol 15: 116-122.
Spring, S., Amann, R., Ludwig, W., Schleifer, K.H., van Gemerden, H., and Petersen, N. (1993) Dominating role of an unusual magnetotactic bacterium in the microaerobic
zone of a freshwater sediment. Appl Environ Microbiol 59: 2397-2403.
Spring, S., Amann, R., Ludwig, W., Schleifer, K.H., Schüler, D., Poralla, K., and Petersen, N. (1994) Phylogenetic analysis of uncultured magnetotactic bacteria from the
alpha-subclass of Proteobacteria. Syst Appl Microbiol 17: 501-508.
7
Spring, S., Lins, U., Amann, R., Schleifer, K., Ferreira, L., Esquivel, D., and Farina, M. (1998) Phylogenetic affiliation and ultrastructure of uncultured magnetic bacteria with
unusually large magnetosomes. Arch Microbiol 169: 136-147.
Taylor, A.P., Barry, J.C., and Webb, R.I. (2001) Structural and morphological anomalies in magnetosomes: possible biogenic origin for magnetite in ALH84001. J Microsc 201:
84-106.
Taylor, A.P., and Barry, J.C. (2004) Magnetosomal matrix: ultrafine structure may template biomineralization of magnetosomes. J Microsc 213: 180-197.
Thornhill, R.H., Burgess, J.G., and Matsunaga, T. (1995) PCR for direct detection of indigenous uncultured magnetic cocci in sediment and phylogenetic analysis of amplified
16S ribosomal DNA. Appl Environ Microbiol 61: 495-500.
Wang, Y., Lin, W., Li, J., and Pan, Y. (2013) High diversity of magnetotactic Deltaproteobacteria in a freshwater niche. Appl Envir Microbiol 79: 2813-2817.
Wenter, R., Wanner, G., Schüler, D., and Overmann, J. (2009) Ultrastructure, tactic behaviour and potential for sulfate reduction of a novel multicellular magnetotactic
prokaryote from North Sea sediments. Environ Microbiol 11: 1493-1505.
Zhou, K., Pan, H., Zhang, S., Yue, H., Xiao, T., and Wu, L. (2011) Occurrence and microscopic analyses of multicellular magnetotactic prokaryotes from coastal sediments in
the Yellow Sea. Chin J Oceano Limnol 29: 246-251.
Zhou, K., Zhang, W.-Y., Pan, H.-M., Li, J.-H., Yue, H.-D., Xiao, T., and Wu, L.-F. (2013) Adaptation of spherical multicellular magnetotactic prokaryotes to the geochemically
variable habitat of an intertidal zone. Environ Microbiol 15: 1595-1605.
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