1 Auxiliary Material Method used to compute air temperature and averaged PAR in Figure 1: Air temperatures for each month were taken from NCEP-NCAR reanalyses [Kalnay et al., 1996] and averaged over the Antarctic sea ice zone and over the 1983–2007 period, excluding points for which ice concentration was below 15%. Ice concentration data were taken from EUMETSAT-OSISAF [2010]. A mean seasonal cycle (1983–2007) of incoming PAR at the ice surface was computed, using the method described in Vancoppenolle et al. [2011], which is only given in summary here. We started from downwelling shortwave radiation flux incoming at the ice surface Fsw(,,d), for each day d, longitude and latitude . Fsw was computed by integrating over a diurnal cycle the formula of Shine [1984], giving Fsw as a function of day of year, time of the day, latitude, cloud fraction and water vapor pressure. Cloud fractions [Berliand and Strokina, 1980] and relative humidities [Trenberth et al., 1989] were taken from spatially-varying monthly mean climatologies. Relative humidity was converted to water vapour pressure using daily mean 1983–2008 NCEP air temperatures. We then converted to PAR(,,d) using PAR = 2.33 x Fsw. Values were averaged over the sea ice zone for each month, using the same procedure as for temperature. Method used to compute the probabilities in Figure 3: chli,k is the chlorophyll concentration value, interpolated on a 5 layer vertical grid, for profile i and layer k=1, …, 5. The vertical average for ith profile is denoted by chlimean. Each core has a core length hi. l=1, …, 5 thickness categories are used with boundaries [Hl-1, Hl]. The boundaries of core length categories, Hl (l=0, …, 5) are chosen as: [0, 0.4, 0.7, 1, 2, 99]. Xi,k,l is equal to one both if chli,k > 1.5 x chlimean and if Hl-1 ≤ hi < Hl; it is equal to zero otherwise. The probability of finding a maximum for layer k and category l, Pk,l, is defined as: 2 Np Equation 1: Pk,l X i,k,l i1 Np 5 X i1 k 1 i,k,l 3 Table S1. List of voyages compiled in the ASPeCt – Bio database. *Cores refers to the number of integrated chl-a profiles collected during a voyage. Voyage ID AMERIEZ 83 Region/Sector Weddell East Year 1983 Months Cores* Nov – Dec 13 AMERIEZ 86 Weddell West Weddell East Weddell East Weddell East Amundsen/ Bellingshausen Weddell West Weddell West Weddell East Weddell West Weddell East Weddell East Weddell West Weddell East Weddell West Weddell East Amundsen/ Bellingshausen Indian/Pacific Ross Sea 1986 Apr – May 9 1986 1986 1987 Jun – Sep Sep – Dec Jun – Jul 31 54 44 References Ainley & Sullivan, 1984 Garrison & Buck, 1991 Sullivan & Ainley, 1987 Garrison & Buck, 1989 Schnack-Schiel, 1987 Schnack-Schiel, 1987 Quetin & Ross, 1988 1988 1988 Oct – Nov Oct – Dec 21 45 Hempel, 1989 Garrison & Close, 1993 1989 Sep – Oct 40 Augstein et al., 1991 1991 1992 1992 1992 Mar Mar – Apr Apr – May Jun – Jul 20 9 19 40 Bathmann et al., 1992 Melnikov, 1998 Spindler et al., 1993 Lemke, 1994 1994 Jan – Mar 30 Miller & Grobe, 1996 1997 1998 17 28 Garrison et al., 2005 Pacific Ross Sea Ross Sea Amundsen/ Bellingshausen Amundsen/ Bellingshausen Amundsen/ Bellingshausen Pacific Amundsen/ Bellingshausen Pacific 1998 1998 1999 2001 Oct May – June Nov Nov – Dec Jan Apr 5 82 25 3 Trevena & Jones, 2006 Arrigo et al., 2003 Garrison et al., 2005 Meiners et al., 2004 2001 Jul – Aug 74 Fritsen et al., 2008 2001 Jul – Aug 33 Fritsen et al., 2008 2001 2002 Oct – Nov Aug – Sep 19 137 Fritsen et al., 2008 2002 Oct – Nov 42 Aug – Sep 86 AURORA 03-V1 Amundsen/ 2002 Bellingshausen Pacific 2003 Sep – Oct 138 AURORA 04-V1 Pacific Oct – Nov 62 ANT V/2 ANT V/3 WINCRUZ 87 ANT VII/2 AMERIEZ 88 ANT VIII/2 ANT IX/3 ISW ANT X/3 ANT X/4 ANT XI/3 AURORA 97-V2 NBP-9803 AURORA 98-V4 ROAVERRS 98 NBP-9901 ANT XVIII/5b LMG-0106 NBP-0104 AURORA 01-V1 LMG-0205 AURORA 02-V1 NBP-0204 2004 McMinn et al., 2007 Pankowski & McMinn, 2008 Fritsen et al., 2008 McMinn et al., 2007 Lannuzel et al., 2007 Becquefort et al., 2009 McMinn et al., 2007 4 Nov – Jan 56 Lannuzel et al., 2008 Weddell West 2004/ 2005 2006 Sep – Oct 31 Meiners et al., 2009 AURORA 07-V1 Pacific 2007 Sep – Oct 53 NBP-0709 Amundsen/ 2007 Bellingshausen Amundsen/ 2008 Bellingshausen & Ross Sea Oct 20 Meiners et al., 2011 van der Merwe et al., 2009 van der Merwe et al., 2011 Fritsen et al., 2011 Dec 14 Fransson et al., 2011 ANT XXII/2 Weddell West ANT XXIII/7 OSO-08 5 Acknowledgments (auxiliary material) KM acknowledges support by the Australian Antarctic program through AAS grant #2767. MV acknowledges support by EU-FP7 project BISICLO and ASPeCt. DNT is grateful for funding from NERC, The Royal Society, The Leverhulme Trust and The Nuffield Foundation. KS acknowledges ARC Discovery project 0209308 and AAS grant #1328. This paper has benefited from Belgian funding through the Communauté Française de Belgique (SIBCLIM - ARC n° 02/07-287), the Fonds National de la Recherche Scientifique (BASICS - FRFC n° 2.4649.07) and the Belgian Science Policy Ofice (BIGSOUTH BELSPO n° SD/CA/05A). We thank Stathys Papadimitriou, Louiza Norman, Christian Haas, Erika Allhusen, Cynthia Chen, Katherine Tattersall and many others for their help with chlorophyll a analysis and support in the field. References (used in auxiliary material) Ainley, D. G., and C. W. Sullivan (1984), AMERIEZ 1983: A summary of activities on board the R/V Melville and USCGC Westwind, Ant J. U.S., 19, 177-179. Augstein, E., N. Bagriantsev, and H.-W. Schenke (1991), Die Expedition Antarktis VIII/1-2, 1989 mit der Winter Weddell Gyre Study der Forschungsschiffe Polarstern and Akademik Fedorov, Ber. z. Polarforschung, 84, 1-134. Arrigo, K. R., D. H. Robinson, R. B. Dunbar, A. R. Leventer, and M. P. Lizotte (2003), Physical control of chlorophyll a, POC, and TPN distributions in the pack ice of the Ross Sea, Antarctica, J. Geophys. Res., 108, 3316, doi:10.1029/2001JC001138. 6 Bathmann, U., M. Schulz-Baldes, E. Fahrbach, V. Smetacek and H.-W. Hubberten (1992), Die Expedition Antarktis IX/1-4 des Forschungsschiffes Polarstern, Ber. z. Polarforschung, 84, 1-134. Becquevort, S., I. Dumont, J.-L. Tison, D. Lannuzel, M. L. Sauvee, L. Chou, and V. Schoemann, V (2009), Biogeochemistry and microbial community composition in sea ice and underlying seawater off East Antarctica during early spring, Polar Biol., 32, 879-895. Berliand, M., and T. G. Strokina (1980), Global distribution of the total amount of clouds (in Russian). Hydrometeorological, Leningrad, p. 71. Fransson, A., M. Chierici, P. L. Yager, and W. O. Smith Jr. (2011), Antarctic sea ice carbon dioxide system and controls, J. Geophys. Res., 116, C12035, doi:10.1029/2010JC006844. Fritsen, C. H., J. Memmott, and F. J. Stewart (2008), Inter-annual sea-ice dynamics and micro-algal biomass in winter pack ice of Marguerite Bay, Antarctica, Deep-Sea Res. II 55 (18-19), 2059-2067. Fritsen, C.H., Wirthlin, E.D., Momberg, D.K., Lewis, M.J. and S.F. Ackley (2011), Biooptical properties of Antarctic pack ice in the early austral spring. Deep-Sea Res. II 58, 10521061 Garrison, D. L., and K. R. Buck (1989), The biota of Antarctic pack ice in the Weddell Sea and Antarctic Peninsula regions. Polar Biol., 10, 211-219. 7 Garrison, D. L., and K. R. Buck (1991), Surface-layer sea ice assemblages in Antarctic pack ice during the austral spring: environmental conditions, primary production and community structure, Mar. Ecol. Prog. Ser., 75, 161-172. Garrison, D. L., and A. R. Close (1993), Winter ecology of the sea ice biota in Weddell Sea pack ice, Mar. Ecol. Prog. Ser., 96, 17-31. Garrison, D. L., A. Gibson, S. L. Coale, M. M. Gowing, Y. B. Okolodkov, Fritsen C. H., and M. O. Jeffries (2005), Sea-ice microbial communities in the Ross Sea: autumn and summer biota, Mar. Ecol. Prog. Ser., 300, 39-52 Hempel, I. (1989), The expedition Antarctic VII/1 and 2 (EPOS 1) of R. V. Polarstern in 1988/1989, Ber. z. Polarforschung, 62, 1-184. Lannuzel D., V. Schoemann, J. de Jong, J.-L. Tison, and L. Chou (2007), Distribution and biogeochemical behaviour of iron in the East Antarctic sea ice, Marine Chemistry, 106, 1832. Lannuzel D., V. Schoemann, J. de Jong, L. Chou, B. Delille, S. Becquevort, and J.-L. Tison (2008), Iron study during a time series in the western Weddell pack ice. Marine Chemistry, 108, 85-95. 8 Lemke, P. (1994), Die Expedition Antarktis X/4 mit F. S. Polarstern 1992, Ber. z. Polarforschung, 140, 1-90. McMinn, A., K. G. Ryan, P. J. Ralph, and A. Pankowski (2007), Spring sea ice photosynthesis, primary productivity and biomass distribution in eastern Antarctica, 20022004, Mar. Biol., 151, 985-995. Meiners, K. M., J. Fehling, M. A. Granskog, and A. Lindfors, A. (2004), Abundance, size distribution and bacterial colonization of exopolymer particles in Antarctic sea ice (Bellinghausen Sea). Aquat. Microb. Ecol., 35, 283-296. Meiners, K. M., L. Norman, M. A. Granskog, A. Krell, P. Heil, and D. N. Thomas (2011), Physicoecobiogeochemistry of East Antarctic pack ice during the winter–spring transition. Deep-Sea Res. II 58, 1172-1181. Meiners, K. M., S. Papadimitriou, L. Norman, D. N. Thomas, and G. S. Dieckmann (2009), Biogeochemical conditions and ice algal photosynthetic parameters in Weddell Sea ice during early spring, Polar Biol. 32, 1055-1065. Melnikov, I. A. (1998) Winter production of sea ice algae in the Western Weddell Sea. J. Mar. Syst., 17, 195-205. Miller, H., and H. Grobe (1996), Die Expedition XI/3 mit F. S. Polarstern 1994, Ber. z. Polarforschung, 188, 1-115. 9 Pankowski, A., and A. McMinn (2008), Ferredoxin and flavodoxin in eastern Antarctica pack ice, Polar Biol., 31, 1153-1165. Quetin, L., and R. Ross (1988), Summary of WINCRUISE II to the Antarctic Peninsula during June and July, 1987, Ant. J. U.S., 23, 149-151 Schnack-Schiel, S. (1987), Die Winter Expedition mit FS Polarstern in die Antarktis (ANT V/1-3), Ber. z. Polarforschung, 39, 1-259. Spindler, M., G. S. Dieckmann, and D. N. Thomas (1993), Die Expedition Antarktis X/3 mit F. S. Polarstern, Ber. z. Polarforschung, 121, 1-259. Sullivan, C. W., and D. G. Ainley (1987), AMERIEZ 1986: A summary of activities on board the R/V Melville and USCGC Glacier, Ant. J. U.S., 22, 188-190 Trenberth, K., J. Olson, and W. Large (1989), A global ocean windstress climatology based on the ECMWF analyses. Technical Report NCAR/TN-338+STR, National Center for Atmospheric Research, Boulder, Colorado, 93pp. Trevena, A. J. and G. B. Jones (2006), Dimethylsulphide and dimethylsulphoniopropionate in Antarctic sea ice and their release during sea ice melting, Mar. Chem. 98, 201-222 10 van der Merwe, P., Lannuzel, D., Bowie, A., Mancuso Nichols, C., and K. M. Meiners (2011), Iron fractionation in pack and fast ice in East Antarctica: temporal decoupling between the release of dissolved and particulate iron during spring melt. Deep-Sea Res. II 58, 1222-1236. van der Merwe, P., D. Lannuzel, C. A. Mancuso Nichols, K. M. Meiners, P. Heil, L. Norman, D. N. Thomas, and A. R. Bowie (2009), Biogeochemical observations during the winter-spring transition in East Antarctic sea ice: Evidence of iron and exopolysaccharide controls, Marine Chemistry, 115, 163-175.