Supplementary Information Fully Automated Laser Ablation Liquid Capture Surface Analysis using NanoElectrospray Ionization Mass Spectrometry Matthias Lorenz, Olga S. Ovchinnikova, and Gary J. Van Berkel* Organic and Biological Mass Spectrometry Group, Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831-6131, USA *Corresponding Author Phone: 865-574-1922 FAX: 865-574-4961 E-mail: vanberkelgj@ornl.gov This manuscript has been authored by a contractor of the U.S. Government under contract DE-AC05-00OR22725. Accordingly, the U. S. Government retains a paid-up, nonexclusive, irrevocable, worldwide license to publish or reproduce the published form of this contribution, prepare derivative works, distribute copies to the public, and perform publicly and display publicly, or allow others to do so, for U.S. Government purposes. Figure S1. Absolute capture efficiency. Comparison of the integrated signal intensities of the cationic dye basic blue 7 (SRM m/z 478 434, CE = 65 eV), generated from LA/LCSA of a spot (120 µm x 139 µm) and a 60 s direct liquid extraction analysis (LESA®) of a laser etched square (122 µm x 122 µm) of a thin-film layer of blue sharpie marker containing basic blue 7 on a glass microscope slide. Solvent: 80/20/0.1 (v/v/v) methanol/water/formic acid. Sampling conditions LESA®: 1 µL droplet, 2 µL total solvent volume, 3 µL re-aspirated, 60 s sampling. Sampling conditions LA/LCSA: 0.4 µL droplet, 1.2 mm probe-to-sample distance, 2 µL total solvent volume, 3 µL re-aspirated. Laser: 355 nm, Nd:YAG, 1 kHz, (120 µm x 139 µm) spot Signal per Surface Area (a.u./mm2) Signal per Surface Area (a.u. / mm2) size, 9 µJ pulse energy on the surface, 15 s ablation. 4 1.5x10 4 1.0x10 3 5.0x10 0.0 LESA LA/LCSA LESA Laser LESA Sampling Mode Sampling Mode Figure S2. Analyte dissolution and mixing. Extracted ion chronograms for rhodamine B (SRM m/z 443 399, CE = 65 eV black trace) and internal standard 0.1 µM crystal violet (SRM m/z 372 356, CE = 65 eV, blue trace) generated from a 1 s laser ablation of a thin-film layer of pink sharpie marker containing rhodamine B on a glass microscope slide followed by a 1 µL, 2 µL, 3 µL and 4 µL re-aspiration of the capture solvent back into the pipette tip. All signal intensities were normalized to the maximum recorded; the signal intensity for crystal violet (blue line) was multipled by 10. Solvent: 80/20/0.1 (v/v/v) methanol/water/formic acid. Sampling conditions: 0.2 µL droplet, 1.2 mm probe-to-sample distance, 7.5 µL total solvent volume. Laser: 355 nm, Nd:YAG, 1 kHz, 155 µm spot size, 9 µJ pulse energy on the surface, 1 s ablation. Rel. Int. (%) 100 1 µL re-aspiration volume 2 µL 3 µL 4 µL 50 0 0 5 0 5 time (min) 0 5 0 5 10 Figure S3. Full scan product ion spectrum (m/z 100-600) of m/z 595 (CID with 40 eV) obtained from laser drilling of the brown pigmented tissue material of an Alstroemeria Yellow King flower leaf followed by LESA® analysis directly on the ablation spot (i.e., LA/LESA®). Solvent: 80/20/0.1 (v/v/v) methanol/water/formic acid. Sampling conditions LESA®: 1 µL droplet, 10 µL total solvent volume, 3 µL re-aspirated, 60 s sampling. Laser: 355 nm, Nd:YAG, 1 kHz, 120 µm spot size, 9 µJ pulse energy on the surface, 15 s exposure. Rel. Int. (%) 100 287 308 Da 50 0 100 200 300 400 m/z 500 600