AQA AS Biology Practical Work A-LEVEL BIOLOGY PRACTICAL WORK Student Handbook 2012/2013 Name: ___________________ 1 AQA AS Biology Practical Work Practical Evaluation % Mark Grade Comment Points for improvement Beetroot membranes Microscope Onion Cells Food Tests on Biological molecules Osmosis on Potato cells. Enzymes. The effect concentration on the activity of Amylase. Fish Gills. Evaluation and scatter plot. Mitosis in Onion or Garlic root tips. Transpiration 2 AQA AS Biology Practical Work At all times Biology students should show full regard for safety and the ethical issues involved with the well being of living organisms and the environment. There will not be time for students to do all of the practical exercises outlined within this booklet so some will be given as demonstrations. The sequence of practical exercises may change. Students must keep a record of their practical marks in the front of this book. Contents Beetroot Practical. ........................................................................................................................................ 4 Using the Biology Calculators to Calculate Standard Deviation (S.D.) ........................................................ 10 Magnification .............................................................................................................................................. 11 Preparation of a temporary slide of Onion bulb scale epidermis. .............................................................. 11 Making Microscope Drawings. .................................................................................................................... 13 Biological Molecules – Food tests ............................................................................................................... 14 Osmosis Experiment ................................................................................................................................... 19 Enzyme practical ......................................................................................................................................... 22 Demonstration of Sheep Heart and Lung Dissection (Not included).......................................................... 24 Fish Head Practical ...................................................................................................................................... 24 Measurements of Circulatory system and Respiratory System (Not included). ........................................ 27 Mitosis root tip practical ............................................................................................................................. 28 Biodiversity Practical .................................................................................................................................. 31 Transpiration Practical ................................................................................................................................ 33 Safety in the Laboratory.............................................................................................................................. 35 3 AQA AS Biology Practical Work Beetroot Practical. An experiment to test the effect on cell membranes of their exposure to different temperatures. Skills; The use of water baths to change or control temperature. Collection of reliable quantitative data where a colour change takes place. Using a standard scientific calculator to calculate mean and standard deviations . Plotting data as line graphs. This exercise is designed to demonstrate to you how to write up A-level Biology practical work. In future you should follow this format when writing up practical work. Title: Clearly state what the experiment is about. ______________________________________________________________________________ ______________________________________________________________________________ Hypothesis: Predict what will happen (1). This should be semi quantitative if possible. Introduction: This gives background and context to the experiment. You can include reference to background work that you and other scientists may have done. Cells are surrounded by membranes. Enclosed within a beetroot cell is a purple dye called Anthocyanin. Anthocyanins are water-soluble pigments produced in the cytoplasm of red coloured plant cells. The attachment of the sugar molecule makes them particularly soluble in the sap of the vacuole, where these molecules are stored. These are responsible for the pink-red colors of most flower petals, of most red fruits (like apples) and almost all red leaves during the autumn. Anthocyanins absorb light in the blue-green wavelengths, allowing the red wavelengths to be scattered by the plant tissues to make these organs visible to us as red(3). A Beet Plant (2). The root tubers are rich in red pigment. 4 AQA AS Biology Practical Work A typical beetroot cell has an irregular shape, a cellose cell wall, plasma membrane, and sap vacuole, surrounded by the tonoplast. Within the cytoplasm are the organelles (but no chloroplasts, Why?), storage granules of starch and the anthocyanin dye (4). In the space provided on the next page draw a diagram to show the structure of a typical beetroot cell, as it would be seen using a light microscope. During this experiment the plasma membrane will be damaged (5) so that it can no longer contain the dye and the cell will release Anthocyanin into the surrounding water giving the water colour (6). The plasma membrane is formed by lipid (fats) and proteins both of which are altered by heat. Materials and Method List your materials 5 AQA AS Biology Practical Work Independent Variable; Immersion of blocks of beetroot cells in water of different temperatures is going to cause different amounts of damage to the membranes. As you are able to choose and vary the temperatures you use this factor is known as the independent (or manipulated) variable. Dependent Variable; This is going to be what you measure so will be the results of the experiment. The results will vary depending on the experimental conditions, that you use, so is called the dependent variable. Constants; You will be changing the temperature of the heat treatment to your beetroot pieces but to make the experimental conditions fair all other factors should be kept constant. Examples of constant factors in this experiment include; _____________________________________________________________________________________ _____________________________________________________________________________________ Control; A control is an extra bit of the experiment that you do to ensure that your results are reliable. For instance, how can you assess the amount of damage that you may do to the beetroot by moving it between test-tubes? How could you measure the amount of dye leaking without the change in temperature? Safety. When working in the laboratories always remember the rules and take care. In your write up outline any safety precautions necessary to ensure safe working practice OR fill in a risk assessment form before starting the practical. Writing in scientific format. Work must be written in the past tense as if it has been done and it should be in impersonal form, so don’t use I, we, they, he or she in the method or discussion as this relates to a person or people. For example……… Beetroot bores, cut using a no. 3 cork bore were provided. These were trimmed to the same length which was ____________ and washed thoroughly before the experiment. Five bores were used by each group. Bores were immersed for exactly __________________, each in a water bath that was set to one of the following temperatures _________, __________, _________ and ________. A control sample was similarly immersed in water at room temperature at ______. Immediately the bores were carefully transferred into prepared, labeled test tubes each containing _________ of distilled water. Care was taken to make sure that the bores went into their correct tube. 6 AQA AS Biology Practical Work After a further __________________ the bores were removed from the tubes and discarded. The contents of the tubes were mixed thoroughly and then viewed by placing a piece of white paper below the tube and looking vertically down into the solution. Qualitative Results; Colour differences were observed and recorded. This is very subjective and is based on the quality of the colour as seen by the observer. Quantitative Results; The absorbance of light by dye in solution can be measured using a COLORIMETER. This puts a numerical value on the results. Colorimeter. The graph on the left (3) shows the absorption peak for Anthocyanin. When using a colorimeter it is possible to select the wavelength that you wish to monitor by using filters. Light that is absorbed is not transmitted! Results. When creating a table us a pencil (not a pen) and make sure you use a ruler for all lines. This time it has been done for you so simply fill it in. Units go in the heading ONLY. 7 AQA AS Biology Practical Work Table to show the relative permeability of beetroot cell membranes when exposed to water baths of varying temperature. Temperature o C Observation Colorimeter readings (% Transmission of light). First column Mean Standard Deviation. (S.D.) contains the independent variable. Graphs (On separate paper) 6 marks. Use graphs to present your results where possible. Chose the most appropriate type of graph. As the independent variable is a range of related values and the graph should illustrate a relationship between the variables, a line graph is the correct choice. In this case the mean values and S.D. range bars can be plotted against temperature. Plot the mean values and give the upper and lower indications of standard deviation using bars. The independent variable will be on the horizontal X-axis (A CROSS!) and the measured (dependent) variable will be on the y-axis (VERTICAL). Label axes include units of measurement and use keys. Give the graph a title. 8 AQA AS Biology Practical Work Discussion (on separate paper 15 marks). 2 marks will be awarded for the correct use of scientific terminology, grammar, spelling and tense. The discussion is where one analyses and explains the results, describe trends or patterns in data collected and outlines positive and negative aspects? Why did these results occur (4), give biological explanations about membrane structure and the effect of heat on its molecular structure? What were the sources of error and limitations of this experiment? How did these results compare to those of others and are the results reliable (relate this to the error bars drawn on the graph)? Did the control prove anything (was the method valid)? If you had to measure absorbance instead of transmission would the graph have been a different shape? How could the experiment be improved (accuracy and precision)? What other relevant experiments could be done? Conclusion (on separate paper 1 marks). One line is all that is needed. Tell the reader whether the results relate to the hypothesis? Evaluation of the practical (3 marks); be reflective about what new skills and theories you have learned from this exercise. References If you have used any published material, IT sources of information or other student’s work anywhere in your write up, this is the place to acknowledge the work of others. Do not rewrite the introduction or method. Total 25 points. References (Should be presented in this format). 1. 2. 3. 4. 5. Roberts, M. King , T. and Reiss, M. (1994). Practical Biology for Advanced Level. Thomas Nelson and sons Ltd. Photo courtesy of Dr Stanley Kays http://www.uga.edu/rootandtubercrops/English/photographs/beetroot.htm http://www.uga.edu/rootandtubercrops/English/photographs/beetroot.htm Clyde, R. (Autumn Term) “Cell Structure” and “Movement across Membranes”. Class notes. Jones, M. Fosbery, R. and Taylor, D. (2004). Biology 1 (8th Edn). Cambridge University Press. 9 AQA AS Biology Practical Work Using the Biology Calculators to Calculate Standard Deviation (S.D.) Standard deviation analyses variation within the data set that you use to calculate the mean. If the numbers are very different the standard deviation will be high but if the numbers used to calculate the mean are similar then the deviation will be small. It is the mean variation of results contributing to a data point! Standard deviation gives the reader an idea of how reliable the results are and may be quoted as a ± after the mean, implying that you can expect to add or take that number from the mean and still be within the range of expected variation, observe the overlap of data ranges. On the graph that you plot give a range bar. This is a vertical line through the mean showing the range if you add the SD on to the mean or take it away from the mean. Below is a presentation of range bars on different graph types: Briefly describe the two graphs and explain in terms of reliability of the results in terms of variation and overlap. Top graph ______________________________ ______________________________ ______________________________ ______________________________ ______________________________ ______________________________ ______________________________ _______Bottom graph _______________________________ _______________________________ _______________________________ _______________________________ _______________________________ _______________________________ _______________________________ _______________________________ _______________________________ To use our calculators to calculate S.D. press these buttons. _______________________________ Input the values _______________ Mode 5 sd ( value Data) (value Data) (etc) Calibration Of Microscopes. Get the results Inverse Inverse Inverse Inverse Mean ẍ4 To get standard deviation number of entrees 6n total of Values ∑x 1 n-1 SD 5 10 AQA AS Biology Practical Work Magnification When you have made a biological drawing you may need to calculate the magnification of that drawing. Sometimes you can just write which objective lens you used to view your specimen, but if you are given values, have measure the size or have a scale bar you must use the following equation. ALWAYS USE THE SAME UNITS OF MEASUREMENT FOR THE TOP AND BOTTOM FIGURES IN THE EQUATION. Magnification = Size of Image = Size of object Size of Drawing Size of Cell This is a ratio so has no units. You could measure both your drawing and the cell at the same axis line to get a value in millimetres for each. Then submit these values into the equation. Preparation of a temporary slide of Onion bulb scale epidermis. Microscopes. Skills; Using an Optical Microscope, preparing temporary mounts, staining and estimating the size of onion cells. Safety: Take care with sharp instruments, avoid getting iodine on your hands and remember that cover slips are made from thin glass and are sharp, particularly when broken. Instructions. You will be provided with the scale leaf of an onion bulb. Remove the epidermis from the inner concave side of the onion bulb scale. This is a thin, single layer of cells forming a translucent membrane. Epidermis peeling off Onion Scale leaf. 11 AQA AS Biology Practical Work Peel off the epidermis using your fingernails, a pair of forceps or the blade of a scalpel (take care). You are aiming to get a single layer of cells (a monolayer). Only a small piece is needed about 5mm2. Larger pieces should be trimmed whilst the specimen is being stained with iodine. Place the epidermis in a watch glass and quickly add a few drops of iodine to flood the specimen, ensuring that the epidermis is immersed in iodine. Leave in iodine for at least 3 minutes. Iodine will stain skin and clothes. After 3 minutes remove the specimen and put it on a glass slide. Use a dropper to put two drops of water on the specimen. Avoid leaving folds in your epidermis and ensure there are no air bubbles underneath it. Use mounted needles to unfold it if necessary. Clean glass slide Two drops of water Place your cover slip at the edge of the water and gently lower it onto the slide with the needle. Cover slip Mounted needle Onion epidermis Exclude air bubbles if possible. Coverslip Clean glass slide Onion epidermis in water Dry the slide around the cover slip and view using the low power microscope objective lens. Move up to high power and draw one cell showing the maximum amount of detail possible. Use the scale in the eye piece to record the length and width of your cell in eye piece units, noting the objective used. Then calculate the magnification (enlargement) of your drawing. 12 AQA AS Biology Practical Work Making Microscope Drawings. Sit with a straight back and focus on the specimen. Place the paper beside you and in pencil try to draw the outline of the specimen without looking at your drawing but continue to look at the specimen through the microscope. Add necessary detail to your drawing after doing the complete outline. Your drawing should be clear unbroken lines and not shaded. Use the space available but don’t go off the page. Keep your drawing central. Spotting can be used to add detail. Tissue plans should not contain any cells. Cell diagrams should not have more than a few cells included. An example has been given. Of course your cell will be a slightly different shape and the walls of neighbouring cells, etc will be in different places. 13 AQA AS Biology Practical Work Title, date and labels should be added with your name. Rulers must be used to provide lines to the labels away from the drawing. Lines should not cross. Calculations relating to magnification should be shown. Your microscope drawing and calculations of magnification for width and length of the cell will be assessed. Biological Molecules – Food tests Skills; Using chemical tests to identify the biological molecules. Including the Benedict’s test for reducing sugars, Iodine for starch, Biuret test for proteins, Emulsion test for lipids and the acid hydrolysis, neutralization and Benedict’s test for non-reducing sugars. Lesson Objectives By the end of this practical exercise you must know how and when to use these “food tests” and what to expect from either a positive or negative result. In this practical you are going to complete experiments that will identify some of the main biological molecules. You will also carry out these tests on an unknown sample. Biological molecule Detection test Carbohydrate: - Benedict’s test Acid hydrolysis, neutralisation and then Benedict’s test. Starch - Iodine test. Proteins (including enzymes) - Biuret test Lipids - Emulsion test Nucleic acids - Acidified acetic orcein is used to stain chromosomes when studying mitosis. Reducing Sugar (e.g. Glucose) Non-Reducing Sugar (e.g. sucrose) 14 AQA AS Biology Practical Work Tests for carbohydrates There are 3 tests for carbohydrates: - Test for reducing sugars = Benedicts test - Test for non-reducing sugars = Acid hydrolysis, neutralisation and then Benedict’s test. - Test for starch = iodine. You will be working to distinguish between reducing sugars such as glucose and non-reducing sugars like sucrose. You will also identify starch, a polysaccharide, proteins and fats, (lipids). Reducing sugars include monosaccharides and most disaccharides (but not sucrose). Non-reducing sugars include some polysaccharides and some disaccharide, such as sucrose. Safety notes. You will be using acetone which is highly flammable so NEVER have it near a naked flame, DO NOT heat acetone. Safety goggles where appropriate. Do not touch hot test tubes with bare hands. Start by carrying out each test on the correct solutions to see how they work. Then you can identify those molecules in the unknown samples by elimination. Test for Reducing Sugars Method 1. In a boiling tube, take 2cm3 of the solution to be tested and add 2cm3 (10 drops) of Benedict’s reagent. Mix the reagents thoroughly. 2. Place the boiling tube in a water bath in which the water has boiled, but the source of the heat has been turned down. Leave for 5 minutes, shaking occasionally. Result Positive test: Reducing sugar present = The blue copper (II) sulphate in the Benedict’s reagent is reduced to brick-red copper (I) oxide. The test is partially quantitative and so the colour will range from green, through yellow, orange and brown to deep red, as the quantity of reducing sugar increases. Negative result: The solution will remain blue in colour. 15 AQA AS Biology Practical Work Test for Non-Reducing Sugars Information There is no specific test for a non-reducing sugar but a non-reducing sugar can be detected by its inability to reduce Benedict’s reagent directly. However if the non-reducing sugar is first hydrolysed by boiling with hydrochloric acid it will be broken down into its monosaccharides. After neutralisation these can then reduce Benedict’s reagent in the normal way. So a non-reducing sugar is identified by a negative reaction to Benedict’s before hydrolysis/neutralisation and a positive result after hydrolysis/neutralisation. Method 1. Carry out the reducing sugar test. If negative get a NEW sample. 2. PUT THE FRESH SAMPLE in a boiling tube, add 2cm3 (10 drops) of dilute hydrochloric acid (0.1M) to the solution and boil for 2-3 mins 3. Then add sodium hydroxide (0.1M), to the boiling tube until the solution is neutral, (over neutralise with 12 drops), or preferably alkaline. Use the pH paper to test for this. (This is important because Benedict’s is not effective in acid conditions). 4. Carry out the reducing sugar test again by adding Benedict’s solution. Result: A negative result (solution remains blue), after the first reducing sugar test, followed by a positive result, (solution turns red/brown), after the second reducing sugar test, is an indication of a non-reducing sugar. Test for Starch Method 1. Place two drops of the solution to be tested in a test-tube. 2. Add a drop of Iodine in Potassium Iodide Solution. (No heating is required). 16 AQA AS Biology Practical Work Result : If starch is present the yellow-orange iodine in potassium iodide solution becomes a blue-black colour. Test for Lipids Method 1. Place 2cm3 of the test solution in a test tube and add 5cm3 of acetone. CARE- Keep acetone well away from naked flames as it is extremely flammable. 2. Shake the tube thoroughly. 3. Add 5cm3 off water and shake gently. 4. As a control repeat procedures 1-3 using water instead of the test solution. Result: A milky suspension indicates the presence of a lipid. Test for protein Biuret Test Method 1. To 2cm3 of the test solution add an equal amount of Biuret Reagent drops of Biuret Reagent B and shake the tube to mix the contents. 2. No heat is required for this test but the contents of the tube can be warmed by rolling in the hands. A. Then add 10 Result: The presence of protein is indicated by a purple-mauve colouration. Now use your skill to detect which two biological molecules are in the ‘unknown’ sample. Fill in the table provided as you complete the tests. 17 AQA AS Biology Practical Work Biological Molecules – Food tests results table Test Test summary and results observed Benedict’s test Acid hydrolysis, Neutralisation and Benedict’s test. Iodine Test Emulsion Test Biuret Test 18 AQA AS Biology Practical Work Osmosis Experiment Measuring the amount of water movement in and out of cells. Skills; Producing an appropriate dilution series when provided with stock solutions of reagents. Collection of reliable quantitative data where there are changes in mass or length. Collect and present raw data in a suitable table conforming to conventions (IOB). Take all measurements to an appropriate level of accuracy and precision. Using a standard scientific calculator to calculate mean, standard deviations and percentage change. Plotting data as line graphs. An experiment to determine the water potential of bulky plant tissue (potato). Work in groups of 3 SAFETY Take care when using the scalpels. The chemicals are not dangerous Apparatus required for each group: 18 potato bores per group paper towel distilled water 1 pair forceps 6X 250ml beakers 0.2M Sucrose solution 1 scalpel 1 tile 0.4M Sucrose solution Ruler 0.6M Sucrose solution 0.8M Sucrose solution 1.0M Sucrose solution Instructions Read through all this before you start. 19 AQA AS Biology Practical Work 1. Choose a recorder from within your group to record all the measurements and recordings. Use the table provided to record your group’s results. You only need to initially record one copy per group, but you will all need a table of results to submit with your report. 2. Check that you have 6X 250ml labeled beakers. Pour 50mls of the particular molar sucrose solution, into the correct beaker. 3. You need to carry out steps 4 to 10 quickly and carefully to avoid the bores drying out, as this may affect your results. 4. Take 18 prepared potato bores; divide them into 6 sets of 3. 5. Place 3 of them side by side on a white tile. Lay a ruler down the edge of the bores and trim the ends with a scalpel, so that they are all the same length. This is clearly shown on the attached diagram. Use this as guidance. 6. Repeat this with the remaining 5 sets of 3 bores, keeping each set of 3 separate. It may be an idea to place each set of 3 bores on a separate scrap of paper to prevent confusion. Call these sets 0.2, 0.4, 0.6, 0.8, 1.0 and distilled water. 7. Gently roll the bores on a piece of paper towel or filter paper to lightly dry the surface. 8. Measure and record the length of all the bores, accurate to 0.5mm. Do this keeping them in their sets of 3. 9. Weigh and record the total mass of the 3 bores of each set. 10. Quickly place each set of bores in their respective beakers of solution. 11. Leave the apparatus for 20 minutes. 12. Whilst you are waiting you can calculate and record the average initial length and average initial mass for each set of potato bores. You can also start to write up your experiment. Use the separate sheet as a guide. 13. After 20 minutes remove the bores using forceps and place each set on the appropriately labeled paper. 14. Gently roll each set of bores, re-measure and record the final lengths of the bores. 15. Weigh and record the final mass for each set of 3 potato bores. 20 AQA AS Biology Practical Work 16. You can now calculate and record the average final length and average final mass for each set of potato bores. 17. For each of the 6 separate solutions, calculate and record the following ratio for each set of bores: final average length ÷ Initial average length 18. Repeat step 17 for mass, so that you calculate the ratio for each solution. 19. Plot 2 graphs. The first one should be the concentration of sugar solutions (molarity), against: Final average length ÷ Initial average length (ratio) The second graph should be the concentration of sugar solutions (molarity), against: Final average mass ÷ Initial average mass (ratio) 20. From your graphs state the concentrations of sucrose solution, which are isotonic with the potato bores, from the length and mass results. This will be where the ratio is 1:1. Write up and assessment. Write up You need to hand in the completed results table, the 2 graphs and a discussion. Points to consider in the discussion: Which is the more accurate – mass or length? Why? Consider the limitations of the measuring equipment for mass verses length. For the rest of the discussion use either the mass or the length results. Use thee set of results which you think are most reliable. Discuss which solution is isotonic. What does this mean? What is happening at a cell level in the potato bore? Discuss which solution is hypertonic. What does this mean? What is happening at a cell level in the potato bore? Discuss which solution is hypotonic. What does this mean? What is happening at a cell level in the potato bore? What were the sources of errors in this practical? How could the practical be improved upon to reduce the errors? (Consider method and equipment used here). Errors and Improvements. 21 AQA AS Biology Practical Work Mark / 15 = % = Grade Enzyme practical: How varying the concentration of amylase affects the rate of conversion of starch to maltose. The affect of Concentration on the rate of Amylase activity. Skills;. Carry out an investigation in a methodical and organized way, demonstrating competence in the required manipulative skills and efficiency in managing time. Collection of reliable quantitative data where a colour change takes place. Take all measurements to an appropriate level of accuracy and precision. Using a standard scientific calculator to calculate mean and rates. Plotting data as line graphs. Demonstration of the activity of Catalase (Not included)Skills; Collection of reliable quantitative data where a gas is evolved. Background Information Amylase is an enzyme. Enzymes are biological catalysts. That is they speed up the rate of chemical reactions. Amylase catalyses the reaction of Starch → Maltose Starch = a polysaccharide. This is insoluble and so makes a good storage polysaccharide for plants. Test for starch – iodine turns blue/black in its presence. Maltose = a disaccharide. It is soluble and a reducing sugar. Test for maltose – Benedict’s. It will turn from a blue colour to a brick red/orange precipitate. Producing the dilutions of the enzyme amylase. Concentration of amylase (%) 100 80 60 40 20 Volume of amylase (enzyme) (ml) 5 4 3 2 1 Volume of Water (ml) 0 1 2 3 4 Total volume of enzyme solution (ml) 5 5 5 5 5 22 AQA AS Biology Practical Work Take 5ml of each dilution and 5mls of starch for each practical. Procedure Read the instructions completely before starting the procedure. Working in pairs: 1. Set up the water bath at 250C. This must be maintained throughout the practical. 2. Place 1 drop of iodine into each well of the spotting tile. 3. As a control, place 1 drop of starch solution into 1 of the wells, in the spotting tile, with 1 drop of iodine. Record the result on separate paper: (1 mark) 4. Using the syringe, put 5ml of the enzyme, (amylase), into one of the test tubes. 5. Using a pipette, put 5mls of starch into a separate test tube. 6. Add the 5ml of amylase to the 5ml starch. Start the stop clock. Immediately test for starch by placing 1 drop of the solution into the first well of the spotting tile. Now every 10 seconds, test another drop from the boiling tube in a different well of the spotting tile, with iodine. Continue doing this until the test for starch is negative, (that is the iodine remains orange). Record the time taken, (in seconds), for no colour change to occur. 7. Repeat steps 1 – 4 for each of the 4 other dilutions. If there is no end result after 5 minutes, then terminate the run at that point but record your results. 8. Before you start the procedure produce an individual results table on separate paper. You can then use this to record your results as you go. Make sure that you record dilutions, time taken for all the starch to be converted into maltose for each dilution. Record the rate too. (1/time (s-1)). Think about the design of your table. (5 marks) 9. Plot a graph of concentration of amylase (%) against rate. Consider what goes on what axes, units, spacing, plotting accuracy, labels and title. (5 marks) You will also be marked on how well you work safely and how well you follow the instructions you have been given. Consideration will also be given to your efficiency when carrying out these task (4 marks) 23 AQA AS Biology Practical Work Demonstration of Sheep Heart and Lung Dissection (Not included). Fish Head Practical Demonstration of Fish Head Dissection to observe Fish Gill Structure. Skills; Plotting data as scatter diagrams and using these to identify correlation. Lesson Objectives. 1. Use knowledge and understanding to pose scientific questions and define scientific problems. 2. Carry out investigative activities, including appropriate risk management, in a range of contexts. • analyse and interpret data you have collected to provide evidence. • evaluate your methodology, evidence and data, resolving conflicting evidence. You will require specific knowledge of the following skills and areas of investigation. • collection and analysis of data relating to intraspecific variation. • use of an optical microscope to examine temporary mounts of cells, tissues or organs. Fact File: Common Name: Hake Scientific (Latin) Name: Merluccius merluccius Usual Size: Norm:1m Max:1.8m UK Record Weights from rod/line: Shore:3lb-8oz-2dr (2kg1g) Morfa Beach, Port Talbot W.S.Parry 1984 Boat: 25lb-12oz-14dr (11kg706g) Loch Etive, Scotland R.Roberts 1997 http://www.uk-fish.info/pages/hake.html This week five AS classes are going to examine the heads of 20 Hake (Merluccius merluccius) donated by a fishmonger in Aberdare, the fish meat was all sold to paying customers and the heads were frozen on the day that the fish were caught. Hake are heavily over fished and the species is now comparatively rare. Examine the fish head that has been provided to you. Below sketch a QUALITATIVE record of the structure of a single gill arch, use a hand lens to see detail. Try to create a diagram that is to life size, so use a ruler. Label gill filaments and gill lamellae. Also indicate the direction of water flow across the gill filament. Annotate with a full description of the gaseous exchange process in fish. 24 AQA AS Biology Practical Work Gills and boney fish breathing Consider what QUANTITATIVE data you could collect that may demonstrate intraspecific variation. 1. Use your knowledge of gaseous exchange in fish to suggest a testable hypothesis relating the size of hake to its gaseous exchange surface area. 2. What investigative activities could you (and fellow AS students) undertake in order to test this hypothesis? 3. a) Outline any health and safety risks that need to be considered when collecting data suggested in 2. b) Explain how the identified risks (3a) can be minimised? 4. On the table provided make and record reliable and valid observations for one fish making measurements with appropriate precision and accuracy. Intraspecific Variables Mass of head (g). 1 2 3 Mean Width of mouth (mm) Corner to corner. Depth of mouth from nose to corner (mm). Cephalic index (mm) circumference of head just behind eyes. *Total number and length of Gill Arches in fish (mm). Mean Length of gill filaments (mm). Mid-width of gill Arch (mm). Look for the tiny lamellae! What would you need to measure them? ____________________ Calculation of total surface area of lamellae (M2). You will be provided a piece of graph paper and with the collated year group data. Name the type of plot you will need to make to demonstrate a correlation to support your hypothesis. Which two data sets would be best for the purpose of demonstrating a correlation linked to the hypothesis and why? Mass of head, mouth length, length or width of gill arch, Cephalic Index and/or Surface area of Gills. What could you calculate to test the variability of the data? Note. 1000mmx1000mm=1 M2 1000umx1000um=1mm2 25 AQA AS Biology Practical Work 5. 6. 7. 8. Outline any risks (factors) that could make these measurements invalid. How could the accuracy of this study be improved? How could the reliability of this study be improved? What are the limitations of this study? Identify the limitations of the material, apparatus and/or techniques used. 9. Hake are heavily overfished and the species is now comparatively rare. Starting with the Latin name for Hake written in its correct format, evaluate the ethics of this investigation (attach sheets as necessary). Hake Head Investigation Class Data Mass of Heads (g) Number 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 Mean S.D 364 204 294 510 219 333 336 255 289 201 295 239 258 300 251 310 345 337 273 190 290.15 69.22515026 Cephalc Index (mm) 223 190 180 230 163 180 196 197 207 150 215 174 185 181 194 190 199 205 160 157 188.8 20.54171134 Estimated Gill Surface area (M2) [mm2/1000000 =M2] 1.5 0.45 0.75 1.54 0.49 2.82 1.91 0.55 2.46 0.41 1.69 1.31 1.34 1.91 0.69 1.04 2.82 0.92 0.58 0.52 1.285 0.784860028 10. Plot the data (Mass Vs S/A) as a scatter plot and draw in the best line of correlation possible. Put mass on the X-axis. 11. Interpret you graph as fully as possible. Describe any correlation you observe. Are there any anomalies? Can you draw any conclusions? What further experiments could enhance this study? 26 AQA AS Biology Practical Work Past paper homework question. 1.The electron micrograph shows a section through a fish gill. The directions of flow of water and of blood are indicated by arrows. 10 m Key Direction of flow of water Direction of flow of blood Source: www.ucdavis.edu/mjguinan (a) Calculate the minimum distance that a molecule of oxygen would have to travel from the water to a red blood cell. Give your answer in micrometres and show your working. Answer .......................................... µm. (2) (b) Explain how the relationship between the direction of flow of water and of blood shown in the micrograph is useful to a fish. (3) (Total 5 marks) Measurements of Circulatory system and Respiratory System (Not included). Pulse, Blood pressure, Spirometer (data logger). Skills; Take all measurements to an appropriate level of accuracy and precision. Using a standard scientific calculator to calculate mean, rates and standard deviation. Plotting data as bar charts and histograms. Plotting data as scatter diagrams and using these to identify correlation. 27 AQA AS Biology Practical Work Mitosis root tip practical Mitosis – Onion/Garlic tips. Using microscopes to examine root tips and to calculate the proportion of cells undergoing mitosis within the field of view. Skills; Using an Optical Microscope, preparing temporary mounts and staining cells. 1. Support a garlic clove over water. Leave until the roots develop, (3 - 4 days). 2. Cut off the root tips 1 - 2 cm long. Put them in a small volume of acetic alcohol for 10 minutes. 3. Wash root tips in ice cold water for 4 - 5 minutes, then dry them on filter paper. 4. Transfer root tips to pre-heated 1M hydrochloric acid at 60°C for 5 minutes. Do this by placing the tips into a watch glass containing the 1M HCL resting on top of a small beaker containing water at 60°C. Repeat step 3. Take care - they will be very fragile. 5. Transfer two root tips to a clean microscope slide. Cut each root tip about 2 mm from the growing tip. Keep the tips, discard the rest. 6. Macerate the root tips with a mounted needle. Add one small drop of lacto-propionic orcein stain for 2 minutes. 7. Cover with a cover slip, and blot firmly with several layers of tissue or filter paper and press gently to spread root tips. 28 AQA AS Biology Practical Work 8. View under the microscope (x400 magnification is adequate) and look for cells with chromosomes Tasks Identify cells in the following stages of mitosis: interphase, prophase, metaphase, anaphase and telophase. Draw outline sketches of a cell to illustrate each stage if possible but at least two different stages. Label your diagrams. Fig. 1. Typical and disturbed stages of mitosis in the meristematic cells of Allium cepa L. roots treated with lead (E, G–J) or cadmium (F): 1440×. (A–D) Control stages of mitosis: prophase (A), metaphase (B), anaphase (C), telophase (D); (E–G) chromosome disturbances: c-metaphase (E), lagging chromosomes in anaphase (F), chromosome bridges (G); (H–J) nucleus disturbances: nucleoli partly outside nucleus (H), “budding” nuclei (I), micronuclei (J). 29 AQA AS Biology Practical Work http://www.google.co.uk/imgres?hl=en&sa=X&rlz=1C1SVEC_en-gbGB403GB403&biw 4. In a given field of view, count the number of cells at each of the five stages of mitosis. Record this in a suitable table. 5. Calculate the mitotic index. Mitotic index = number of cells containing visible chromosomes divided by the total number of cells in field of view Assessment of Drawings. Two cell drawings must represent two different stages of mitosis. Drawings must have continuous lines and not be sketchy and all lines must be clear and continuous. Stages of mitosis must be recognisable. Chromosomes must be drawn. Alignment of chromosomes must be correct, the nuclear envelope will only be present in early prophase or very late telophase just as the phragmoplast forms. Splitting into new cells is not a stage of mitosis not is interphase. At least two visible features must be labeled. The plasma membrane is not visible. Arrows or the ends of lines must be on the labeled structure. The stages drawn must be identified and spelt correctly. HCL is used to break down the cell walls. This causes the cells to separate so a monolayer forms when the root tip is squashed. Also because the cells are no longer connected the stain can penetrate into more of the cells. 30 AQA AS Biology Practical Work Biodiversity Practical Biodiversity Index Calculations (seeds). Using a sample of seeds and beans to calculate a biodiversity index. Objective: Use an index of Diversity (d) to calculate the biodiversity of a habitat, using the formula provided; Five communities of seeds and beans (A,B,C,D and E) have been provided. Using the artificial habitat grids and random coordinates, sample the biodiversity and determine the diversity index for the communities of seeds and beans in the 5 samples. Each group should calculate for a different sample. Results. Sample ____ Sampling Table. Square (quadrat) Number 1 2 3 4 5 6 7 8 9 10 Total (n) Red Kidney Bean Black Kidney Bean Haricot Bean Maize (Sweet corn) Cardamom Seeds N= ________ d = N (N – 1) = Σ n (n – 1) 31 AQA AS Biology Practical Work Sample d = N (N – 1) Σ n (n – 1) A B C D E Identify which two samples have the same biodiversity. Which is the most diverse community? Which is the least diverse community? Discussion; Why were samples taken? (why didn’t the whole lot get counted?) How could accuracy have been improved? What assumptions were made? Comment on the variation between quadrats from the same sample (You could calculate Standard Variation (SD), what would that mean?) Were the results reliable? What was done to improve reliability? How could better reliability be incorporated into this study? To get an assessment of the true biodiversity of the bean and seed populations are there any other factors that might be considered? (clue; consider the genetic relationships between the species of organisms being sampled). Discuss whether this is a Valid (of value) experiment for measuring biodiversity (be constructively critical). Give ethical reasons as to why we should not do a similar experiment with rare animals. 32 AQA AS Biology Practical Work Transpiration Practical Transpiration using a potometer. Investigation into how environmental factors such as wind, temperature and light intensity alter the rate of transpiration. Skills; Take all measurements to an appropriate level of accuracy and precision. Using a standard scientific calculator to calculate mean, rates and standard deviation. Plotting data. Comparing rates of transpiration using a Potometer. Label the diagram. It is difficult to measure the rate water is lost form leaves but can measure how quickly it is taken up by the stem. Most of this water is lost through transpiration, (approx 99%). Use a potometer. Needs to be water and air tight, so no air bubbles break the continuous column of water. So set up under water. Cut the stem at an angle so less chance of air bubbles & increase the surface area and so the number of xylem vessels exposed to the water. Use a fresh stem from a plant with lots of leaves, so it is living and known to be transpiring. 33 AQA AS Biology Practical Work As water evaporates from leaves more water is drawn up the capillary tubing. Record the position of the meniscus at set time intervals. Can plot a graph of distance moved against time. What additional information would you need to calculate volume lost? Exposure of the plant to different conditions, enables comparison of the rate of transpiration. Using a potometer above design experiments to test the variation of named environmental conditions on the water loss of a plant. List environmental factors that could be tested and suggest a method for testing; Environmental factor Method Outline Question 1. Suggest how an increase in wind speed and a rise in temperature may cause the rate of transpiration to increase. 2. How does this cooling method compare to the main cooling mechanism in mammals? Answer 1. Increased wind speed moves water vapour away from leaf more rapidly and so maintains a steeper water potential gradient between air spaces of leaf and surrounding air. 2. Rise in temp increases kinetic energy of water molecules which move and therefore diffuse more rapidly. High temp may also decrease humidity of the air (as warm air can hold more water), so increasing the diffusion gradient. 3. Mammals use the evaporation of sweat (water) for cooling. Water evaporates from skin surface absorbing heat energy. So is similar to plants. 34 AQA AS Biology Practical Work Safety in the Laboratory We have modern, well equipped laboratories here at Morgannwg and every student will, at some point, be required to work in the lab. Here is a brief introduction to the lab and the safety requirements you will take. However you will receive a full induction on health and safety in the laboratory and each practical has its own risk assessment. Hazards will be drawn to your attention at the start of each piece of practical work. * Listen carefully to your tutor and follow all instructions. * Lab coats to be worn at all times during practical when required by staff. * Do not taste or smell any chemicals. * No food or drink in the lab. * Do not smoke in the lab - lots of flammables! * Protective eye wear is essential. * Long hair must be tied back - guys as well! * Report any accidents, spillages or breakages immediately. * Observe the correct disposal of all chemicals, waste, broken glass and sharps. * Clear up after yourself and your group. 35