Table S9. GO terms enrichment of the top 1% iHS windows in Collas with EASE-score <0.01. Category Aging Apoptosis Cell proliferation/ development DNA regulation General EASE score 0.0068 0.0013 0.0014 0.0020 0.0025 0.0077 0.0088 0.0006 0.0020 0.0045 0.0056 0.0087 0.0090 0.0091 0.0099 0.0013 0.0014 0.0014 0.0014 0.0014 0.0018 0.0021 0.0040 0.0049 0.0051 0.0058 0.0060 0.0077 0.0001 0.0001 0.0004 0.0004 0.0005 0.0009 0.0009 0.0011 0.0011 0.0015 0.0016 0.0017 0.0018 0.0019 0.002 0.0022 0.0023 0.0024 0.0027 0.0031 0.0032 GO term regulation of telomerase activity negative regulation of apoptotic process negative regulation of programmed cell death negative regulation of cell death anti-apoptosis regulation of apoptotic process regulation of programmed cell death regulation of cell proliferation negative regulation of cell proliferation cell cycle phase regulation of cell cycle cell cycle regulation of anatomical structure morphogenesis regulation of cell cycle arrest tissue development sequence-specific DNA binding transcription factor activity nucleic acid binding transcription factor activity regulation of chromosome organization regulatory region DNA binding regulatory region nucleic acid binding regulation of transcription, DNA-dependent chromatin modification transcription regulatory region DNA binding histone modification covalent chromatin modification positive regulation of histone modification sequence-specific DNA binding regulation of gene expression transferase activity chromosome organization transferase activity, transferring acyl groups N-acyltransferase activity chromatin organization positive regulation of chromosome organization multi-organism process N-acetyltransferase activity catalytic activity organelle organization regulation of cell adhesion transferase activity, transferring acyl groups other than amino-acyl groups macromolecule modification cell cycle process regulation of RNA biosynthetic process protein modification process protein heterodimerization activity acetyltransferase activity enzyme regulator activity positive regulation of nucleobase-containing compound metabolic process negative regulation of biological process Enriched genes 3/8 15/430 15/435 15/452 9/179 20/820 20/831 23/828 14/401 12/338 15/507 12/371 13/426 8/178 12/378 19/644 19/646 6/ 60 11/245 11/245 34/1611 11/260 10/238 8/158 8/159 4/26 14/457 35/1823 30/1137 16/391 10/167 7/70 13/301 5/30 17/517 6/ 57 49/2689 26/1069 10/207 8/130 29/1275 17/555 34/1619 28/1223 10/219 6/69 18/630 21/813 36/1805 Category EASE score 0.0044 0.0047 0.0053 0.0056 0.0061 0.0062 General Heart Immune response Ion related Metabolism Morphogenesis Nitrogen 0.0069 0.0078 0.0085 0.0089 0.0090 0.0091 0.0092 0.0100 0.0005 0.0007 0.0015 0.0064 0.0075 0.0049 0.0011 0.0011 0.0011 0.0014 0.0018 0.0018 0.0018 0.0032 0.0055 0.0065 0.0067 0.0075 0.0097 0.0063 0.0037 0.0072 0.0089 0.0029 0.0085 RNA regulation 0.0087 RNA regulation Stress response 0.0095 0.0007 0.0010 0.0023 0.0024 0.0085 GO term DNA metabolic process enzyme activator activity cellular response to cytokine stimulus regulation of cellular macromolecule biosynthetic process positive regulation of cellular biosynthetic process negative regulation of nucleobase-containing compound metabolic process positive regulation of biosynthetic process regulation of macromolecule biosynthetic process macromolecular complex negative regulation of developmental process transferase activity, transferring phosphorus-containing groups DNA binding peptidyl-amino acid modification response to cytokine stimulus cardiac ventricle formation cardiac chamber formation response to virus cellular response to interleukin-1 response to other organism ion transmembrane transport carbohydrate metabolic process catabolic process regulation of hydrolase activity positive regulation of hydrolase activity macromolecule glycosylation protein glycosylation glycosylation cellular carbohydrate metabolic process cellular protein metabolic process regulation of nucleobase-containing compound metabolic process hydrolase activity protein O-linked glycosylation protein metabolic process cartilage development positive regulation of nitrogen compound metabolic process negative regulation of nitrogen compound metabolic process regulation of nitrogen compound metabolic process regulation of RNA metabolic process negative regulation of transcription from RNA polymerase II promoter regulation of transcription from RNA polymerase II promoter positive regulation of RNA metabolic process cellular response to stress response to DNA damage stimulus cellular response to abiotic stimulus response to oxidative stress response to stress Enriched genes 14/440 11/291 10/249 34/1717 21/863 17/626 21/873 34/1752 37/1978 12/372 17/652 27/1284 11/322 11/326 4/10 4/11 8/126 4/27 9/216 8/158 16/473 25/982 18/580 14/384 9/170 9/170 9/170 13/372 30/1439 36/1877 29/1389 5/57 33/1705 5/54 21/827 17/636 34/1654 11/318 19/769 18/715 20/663 14/372 7/101 9/178 28/1345 Category Structure EASE score 0.0000 0.0001 0.0003 0.0003 0.0004 0.0005 0.0005 0.0007 0.0009 0.0013 0.0014 0.0022 0.0056 0.0058 0.0064 0.0079 0.0091 0.0097 0.0099 GO term membrane part endoplasmic reticulum integral to membrane chromosomal part intrinsic to membrane nucleoplasm part intrinsic to plasma membrane protein complex integral to plasma membrane apical plasma membrane plasma membrane part chromatin perinuclear region of cytoplasm nuclear chromosome part insoluble fraction organelle part nuclear part nucleoplasm cohesin complex Enriched genes 55/2829 19/494 47/2397 14/323 47/2443 18/543 22/761 37/1743 21/733 9/161 29/1252 8/136 12/349 8/163 18/687 51/3061 33/1698 16/599 3/10