Jeremy Grenier PI3K inhibitors in CLL therapy Dr. Panasci Lab PI3K inhibitors in CLL therapy Introduction Chronic lymphocytic leukemia (CLL) is the most prevalent leukemia in Western populations. It is a disease characterized by actively dividing B-lymphocytes in the lymph nodes and bone marrow (Schmid et al. 1994; Messmer et al. 2005) as well as the accumulation of quiescent lymphocytes in the peripheral blood of affected patients (Hamblin et al. 1997). Overexpression of phosphatidylinositol 3-kinase (PI3K) in CLL B cells is thought to play a role in this defect in apoptosis (Ringshausen et al. 2002). However, several classes of PI3K exist, each with distinct downstream effects. This study focuses on class I PI3Ks which phosphorylate inositol phospholipids, converting PtdIns(3,4)P2 to PtdIns(3,4,5)P3 (Hawkins et al. 1992). These products act as docking sites for proteins containing a pleckstrin homology (PH) domain (Rameh et al, 1997). One of the predominant results of this signaling is the recruitment of Akt through its PH domain and its activation by PDK-1 (Astoul et al., 1999; Reif et al., 1997). This activation of Akt is thought to contribute to CLL cell survival by blocking apoptotic pathways and promoting proliferation and cell survival (Barragan et al., 2002; Ringshausen et al., 2002; Plate 2004). Interestingly, the PI3K/Akt pathway is also implicated in chemoresistance in certain cancers (Page et al., 2000; Brognard et al., 2001). For CLL patients, fludarabine (Flu) and cyclophosphamide (HC) are standard treatments. Fludarabine acts as an adenine analogue, incorporating into DNA during DNA synthesis. This incorporation inhibits DNA polymerase and prevents cell cycle progression, often resulting in cytotoxicity (Gandhi et al. 1994). Cyclophosphamide is metabolized in the liver to its activated form, 4hydroperoxycyclophosphamide. Cells in this study were treated with activated HC in place of standard cyclophosphamide. This activated form acts as an alkylating agent to disrupt DNA 1 Jeremy Grenier PI3K inhibitors in CLL therapy Dr. Panasci Lab replication, causing mutations leading to cell death (Teicher et al., 1996; Voelcker et al., 1984). CLL patients often become resistant to these standard treatments, so methods of overcoming resistance are an important area of CLL research. In one study, inhibition of PI3K increased apoptosis in leukemic cells treated with fludarabine (Yu et al., 2005). Similarly, inhibition of PI3K/mTOR with BEZ235, a dual PI3K/mTOR inhibitor, also sensitized T-ALL cells to cyclophosphamide (Chiarini et al., 2010). These studies suggest that inhibition of class I PI3K could offer clinical advantages when used with conventional chemotherapy. Not surprisingly, inhibition of Akt induces apoptosis in CLL cells, foreshadowing the clinical importance of the PI3K/Akt pathway in CLL (de Frias et al., 2009). As a single agent, PI3K inhibitors have already been shown to decrease CLL lymphocyte survival. LY294002 is a potent, class I PI3K inhibitor which induces apoptosis in CLL cells in vitro (Ringshausen et al., 2002). However, LY294002 and other early developed PI3K inhibitors are relatively nonspecific and show poor clinical application due to high toxicity levels (Schultz et al., 1995; Ng et al., 2001; Knight et al., 2007). As a result, newer PI3K inhibitors are being developed. For example, Herman et al. showed that a new class I PI3K inhibitor, CAL-101, promotes apoptosis in CLL lymphocytes ex vivo (Herman et al., 2010). The focus of this study is a novel PI3K inhibitor. NVP-BKM120 is a class I PI3K inhibitor currently in clinical trials for solid tumors (Maira et al., 2010). BKM120 has already been shown to act synergistically with Rapamycin, an mTOR inhibitor, in melanoma cell lines (Aziz et al., 2010). However, it has yet to be studied in the treatment of CLL. In this study, we explored the effects of BKM120 on CLL cell survival and chemoresistance. 2 Jeremy Grenier PI3K inhibitors in CLL therapy Dr. Panasci Lab Materials and Methods Cell Line Culture I83, a B-CLL cell line, was derived from a patient with chronic lymphocytic leukemia (Carlsson et al., 1989). MEC2, MEC1, JVM2, JVM3, JVM13, and EHEB were purchased from DSMZ (Braunschweig, Germany). All cells were cultured in RPMI 1640 medium supplemented with 10% fetal bovine serum (Invitrogen, Carlsbad, CA) in a 5% CO2 humidified atmosphere. Cytotoxicity Assay B-CLL cell lines were plated on a 96-well plate in RPMI 1640 media/10% FBS at a concentration of 1.5 × 105 cells/mL. After one hour, cells were treated with various concentrations of NVP-BKM120 alone (Novartis, Cambridge, MA), fludarabine alone (Sigma Aldrich Co, St. Louis, MO) , 4-hydroperoxycyclophosphamide alone (TCR, Toronto, Canada), and combinations of fludarabine and BKM120 or 4-hydroperoxycyclophosphamide and BKM120. Treated cells were incubated for 72 hours before treatment with the MTT or WST-1 assay as previously described by (Christodoulopoulos et al., 1998; Guertler et al., 2011). The efficacies of the various drug treatments were determined by calculating 50% inhibitory concentrations (IC50) and the synergy values (I value) according to the equation of Berenbaum (Berenbaum, 1992). Using this equation I values significantly less than 1 indicate synergy, equal to 1indicate additive behavior, and greater than 1 indicate inhibitory drug interactions. Flow Cytometry Analysis Cells were plated at 1.5 × 105 cells/mL in RPMI 1640 medium with 10% FBS. Cells were treated with vehicle (DMF), BKM IC50, 0.1 µM BKM, 0.3 µM BKM, 0.5 µM BKM, Flu IC50, HC IC50, and the combinations of primary drug with BKM. Cells were harvested 24 hours after treatment. Apoptosis and phosphorylation of Akt were determined as described below. 3 Jeremy Grenier PI3K inhibitors in CLL therapy Dr. Panasci Lab pAkt Flow Cytometry After harvesting, cells were washed in PBS before incubation in 1% paraformaldehyde at 37ºC for 10 min. Cells were then resuspended in ice cold 100% methanol. After washing in PBS3%FBS, samples were incubated at room temperature with anti-Akt S473-Alexa488 mouse antibody (Invitrogen) for 30 min. A control sample was incubated with isotype-Alexa488 antibody (Invitrogen) for background measurement of fluorescence. All samples were then washed and resuspended in PBS-3%FBS for analysis. Phosphorylation levels are expressed as a percentage of the population. Apoptosis Analysis After harvesting, cells were washed in ice cold PBS and incubated in a solution of binding buffer, propidium iodide (PI) , and Annexin V-APC for 15 min at room temperature (Invitrogen). Control samples were incubated with binding buffer alone, binding buffer and PI, or binding buffer and Annexin V-APC. Samples were then analyzed through flow cytometry. Apoptosis is expressed as a percentage of the population. Western Blot Analysis 3 x106 cells were plated at in RPMI media supplemented with 10% FBS and treated with a range of non toxic concentrations of BKM120 (0-1 M) and the IC50 for 2, 6 and 24h to assess the phosphorylation status of Akt. After treatment, cells were harvested and washed in PBS before incubation in 100l of protein lysis buffer (20 mM Tris HCl, 150 mM NaCl, 1% NP40, 10% glycerol, 0.1% SDS, 1 mM Sodium orthovanadate, 1 mM PMSF and 1 protease/phosphatise inhibitor complete mini pill (Roche Diagnostic Gmbh)) for 1h on ice. After a 15 minute centrifugation at 13000 rpm, protein concentration was determined in the supernatant with the protein BCA assay kit (Thermo Scientific). 50 g of protein was resolved in 4-15% SDS-PAGE, 4 Jeremy Grenier PI3K inhibitors in CLL therapy Dr. Panasci Lab transferred to nitrocellulose (BioRad), and probed with the following antibodies: Akt and Akt S473 (Cell signaling). Equal protein loading was confirmed by reprobing membranes with an actin antibody (Santa Cruz). The blots were developed using the appropriate HRP-secondary antibodies (α-mouse, α-rabbit or α-goat) and ECL (Amersham). Results BKM120 inhibits phosphorylation of Akt in a dose-dependent manner in CLL cell lines Using Western blot analysis, we examined BKM120’s ability to inhibit PI3K by assessing the phosphorylation status of its downstream target Akt. As shown in Figure 1, treating cells with BKM120 reduces the phosphorylation of Akt in a dose-dependent manner, suggesting that BKM120 is effective in inhibiting PI3K in MEC2 cells. From this, we chose relatively nontoxic concentrations of BKM120 which were just shown to inhibit activation of Akt. These concentrations were used in the following combination experiment. Fig. 1. Western blot with MEC2 cells 24 hours after treatment with BKM120 5 Jeremy Grenier PI3K inhibitors in CLL therapy Dr. Panasci Lab BKM120 does not sensitize CLL cell lines to fludarabine or cyclophosphamide Using the MTT and WST-1 assays, we determined the average IC50 values of BKM, Flu, HC, and the combinations of Flu+BKM and HC+BKM in the I83 & MEC2 cell lines (Table 1). Although there was a slight decrease in the average IC50 of Flu when combined with 0.1 µM BKM in I83 cells, this difference does not suggest a synergistic response, as the average I-Value remained near 1 (data not shown). These experiments were repeated in MEC2 cells with 0.2μM & 0.1μM BKM. While there was a decrease in the IC50, these results are most likely additive effects due to BKM’s toxicity at these concentrations (Table 2). Cell Line IC50 IC50 Flu BKM (M) (M) I83 1.07±0.43 0.93±0.19 MEC2 0.64±0.11 >20 IC50 F+0.2B (M) 19±1.7 IC50 F+0.1B (M) IC50 4-HC (M) 0.78±0.22 1.75±0.7 9 2.51±1.2 18.9±1.6 IC50 H+0.2B (M) IC50 H+0.1B (M) 1.99±1.00 1.55±1.8 1.53±0.4 Table 1. Average IC50 Values determined through statistical analysis of MTT & WST-1 assay. Cell Line I-Value HC+ 0.2M BKM I83 MEC2 0.70±0.26 I-Value HC+ 0.1M BKM 1.3±0.44 0.2M BKM % Survival 1.2±0.09 71.1±6.9 0.1M BKM % Survival 85.7±10.6 76.8±2.9 Table 2. Average I-Value and % Survival 6 Jeremy Grenier PI3K inhibitors in CLL therapy Dr. Panasci Lab BKM120 only slightly reduces drug-induced phosphorylation of Akt Fig. 2. Phosphorylation of Akt in I83 cell line. Flow cytometric analysis was used to assess phosphorylation levels 24 hours after treatment. 80 % of cell population 70 60 50 40 30 20 10 0 Fig. 3. Levels of phosphorylated Ser473 Akt 24 hours after treatment, expressed as a percentage of cell population. 7 Jeremy Grenier PI3K inhibitors in CLL therapy Dr. Panasci Lab Fig. 4. Western blot analysis of phosphorylation status of Akt following 24hr treatment Because the drugs were not acting synergistically, we sought to confirm that phosphorylation of Akt was reduced when BKM120 was used in combination with the DNA damaging drug Fludarabine. We used I83 for these experiments because MEC2 cells were not sensitive to Flu alone. As shown in Fig. 2 and Fig. 3, phosphorylation of Akt dramatically increases upon treatment with IC50 of Flu or HC, confirming results from earlier studies and suggesting that this phosphorylation is upregulated after drug treatment. Treatment with varying concentrations of BKM120 (0.5 µM, 0.3 µM, and 0.1 µM) shows only a slight reduction in phospho-Akt levels, even at the toxic concentrations of 0.5M. We confirmed these observations with a Western blot performed 24 hours after treatment. While concentrations above 0.6M BKM show a clear reduction in pAkt levels, these concentrations are much too toxic to be useful for combination studies. This increased phosphorylation of Akt may explain why BKM120 did not sensitize cells to Flu or HC. 8 Jeremy Grenier PI3K inhibitors in CLL therapy Dr. Panasci Lab Characterization of apoptotic signaling pathways To confirm that the combination of drugs did not increase cell death, apoptotic signaling protein levels were assessed 2 hours, 6 hours, and 24 hours after treatment in MEC2 cells. As seen from the blots, all the apoptotic signaling molecules we assessed did not change over 24 hours regardless of treatment conditions. However, we did note a decrease in pAkt and pERK levels as early as 2 hours post-treatment, confirming results from an earlier study using another PI3K inhibitor (Yu et al. 2005). There appears to be a decrease in Bax protein in the 2 hour blot, but this is most likely due to experimental error as the protein is restored after 6 hours and 24 hours. The same error most likely accounts for the reduced BCL-2 protein seen in the 24 hour untreated control. Overall, these results suggest that the combinational treatment of Flu or HC with BKM does not increase apoptotic signaling in these cells. Fig. 5. Western blot analysis of apoptotic signalling proteins 2 and 6 hours post treatment. 9 Jeremy Grenier PI3K inhibitors in CLL therapy Dr. Panasci Lab Fig. 6. Western blot analysis of apoptotic signalling proteins 24 hours post treatment. Treatment with 0.1μM BKM120 does not increase Flu- or HC-induced apoptosis We again sought to confirm earlier observations that the addition of a non-toxic concentration of BKM120 does not increase Flu- or HC-induced apoptosis in I83 cells. Preliminary data shows that Flu and HC induce apoptosis in a higher percentage of cells compared to the vehicle DMF (Fig. 7 and Table 3). Consistent with the cytotoxicity data (Table 1), 0.1 µM BKM seems to have little effect on cellular apoptosis when used in combination with Flu or HC. However, this observation must be confirmed with replicate experiments. 10 Jeremy Grenier PI3K inhibitors in CLL therapy Dr. Panasci Lab Fig. 7. Induction of apoptosis in I83 cell line. Bottom right quadrant shows early apoptotic cells. Top right quadrant shows late apoptotic cells. % Apoptotic Cells DMF 0.1M BKM FLU IC50 FLU+0.1M BKM HC IC50 HC+0.1M BKM 4.5 6.2 16.7 11.5 11.0 10.3 Table 3. Percentage of cells in early/late apoptosis as determined by flow cytometry. Cytotoxicity of BKM120 alone on 7 CLL cell lines While BKM120 may not sensitize CLL cells to Flu or HC, the IC50 values we obtained for BKM120 alone in I83 and MEC2 were within clinically obtainable ranges. Therefore, we next sought to determine if this high toxicity was consistent across other leukemic cell lines. Results of WST-1 and MTT experiments are shown in Table 4 and Figure 8. Given the slightly different IC50 values, we hypothesized that this discrepancy could be a result of different levels 11 Jeremy Grenier PI3K inhibitors in CLL therapy Dr. Panasci Lab of basal pAkt expression between the cell lines. However, as seen in Figure 9, the basal phosphoSer473 levels do not correlate with sensitivity to BKM120. In the future, this experiment will be repeated for phospho-Thr308Akt. This second phosphorylation site may better explain the different toxicities to BKM. Lastly, we compared BKM120’s effectiveness in decreasing pAkt in 5 cell lines. As shown in Fig. 10, BKM120 reduces pAkt levels in all 5 cell lines except JVM3, suggesting that BKM120 may inhibit growth in these cells by another mechanism. Cell Line I83 MEC2 MEC1 JVM2 JVM3 JVM13 EHEB BKM120 IC50 (M) 1.07±0.43 0.64±0.11 0.84±0.04 0.78±0.18 1.18±0.29 1.34±0.75 0.68±0.15 Table 4. BKM120 IC-50 Values for 7 CLL cell lines. 2.5 BKM120 IC50 2 1.5 1 0.5 0 MEC2 EHEB JVM2 MEC1 I83 JVM3 JVM13 Fig. 8. BKM120 IC50 Values 12 Jeremy Grenier PI3K inhibitors in CLL therapy Dr. Panasci Lab Basal pAkt Ser473 Akt Ser473/Akt 140.0 120.0 100.0 80.0 60.0 40.0 20.0 0.0 JVM3 JVM13 MEC2 MEC1 JVM2 EHEB I83 CLL Cell Lines Fig. 9. Basal phospho-Ser473 Akt in 7 CLL cell lines as assessed by Western blot. pAkt levels 24hr after treatment 1.6 Akt Ser473/Akt 1.4 1.2 MEC1 (n=1) 1 JVM3 (n=1) 0.8 JVM2 (n=1) 0.6 EHEB (n=1) 0.4 MEC2 (n=3) 0.2 0 Un IC-50 0.2BKM 0.1BKM 0.05BKM Fig. 10. Phosphorylation levels of Akt 24 hours after treatment with BKM120. Data shown as ratio of pAkt/Akt. 13 Jeremy Grenier PI3K inhibitors in CLL therapy Dr. Panasci Lab Discussion BKM120 is a novel pan-class I PI3K inhibitor with improved clinical pharmacokinetics. Given previous research done on the role of the PI3K/Akt pathway in CLL survival and chemoresistance, we sought to sensitize CLL cells to standard chemotherapy by inhibiting class I PI3K. However, our cytotoxicity results suggest that inhibition of PI3K with 0.1 or 0.2µM BKM120 is not enough to sensitize CLL cell lines to chemotherapy, despite BKM120’s toxicity at these concentrations. While BKM120 does appear to reduce drug-induced Akt phosphorylation, it does not reduce it to levels observed in the untreated control sample (Fig. 2). There are two possible explanations for this: 1) Drug treatment causes a surge in PI3K activity which requires higher, toxic doses of BKM120 to overcome, making the drug impractical for combination studies. 2) A kinase other than PI3K is phosphorylating Akt in response to drug treatment. We have shown that 0.2M BKM120 does reduce pAkt levels in cells not treated with chemotherapy. However, as seen in Fig. 4 and Fig. 6, cells treated with both 0.2M BKM120 and a chemotherapeutic agent still show significant levels of pAkt. This may be attributed to higher PI3K activity, but this explanation seems unlikely without extracellular activation of PI3K. For the second possibility, another kinase may be phosphorylating Akt in response to chemotherapy. Several kinases have been discovered to phosphorylate Akt at S473 including DNA-dependent protein kinase (Feng et al., 2004), Akt itself (Toker and Newton 2000), and mTOR when bound to Rictor in the TORC2 complex (Santos et al., 2001; Sarbassov et al., 2005). Thus, drug-induced phosphorylation of Akt may be attributed to the continued activity of one or all of these kinases. This may account for the residual pAkt seen after cells were treated with BKM120. 14 Jeremy Grenier PI3K inhibitors in CLL therapy Dr. Panasci Lab If this is the case, these factors may also explain why BKM120 did not sensitize CLL cells to fludarabine or cyclophosphamide. An alternative means of overcoming this resistance may be inhibition of Akt directly rather than targeting PI3K upstream. Several Akt inhibitors have been studied. For instance, Akti-1/2 and A-443654 effectively induce apoptosis in CLL Bcells ex vivo, providing another method of inhibiting the PI3K/Akt survival pathway (de Frias et al., 2009). These inhibitors have yet to be studied in combination with conventional chemotherapy in CLL cells. As a single agent, BKM120 may yet prove useful. A study by Cuní et al. showed that PI3K and NF-ĸB signaling are required to prevent spontaneous apoptosis of CLL cells ex vivo. This PI3K signaling was dependent on cell culture with fibroblasts, suggesting that the microenvironment promotes CLL cell survival through PI3K signaling (Cuní et al., 2004). Because our study was performed in cell lines, this aspect of CLL survival was not addressed. BKM120 may be more effective against CLL lymphocytes in vivo by disrupting the effects of this microenvironment interaction pathway. Future studies may also focus on combining BKM120 with an mTOR inhibitor to overcome chemoresistance. This may further reduce the levels of pAkt seen after treatment with BKM120 because, as explained above, mTORC2 is capable of phosphorylating and activating Akt. Along these lines, a recent study shows that BKM120 and rapamycin, an mTOR inhibitor, act synergistically to reduce cell viability in melanoma cell lines (Aziz et al., 2010). Similarly, a dual PI3K/mTOR inhibitor, NVP-BEZ235, is cytotoxic to T-cell acute lymphoblastic leukemia cells and sensitizes them to chemotherapy (Chiarini et al., 2010). Thus, dual inhibition of PI3K and mTOR may also sensitize CLL lymphocytes to standard chemotherapy. 15 Jeremy Grenier PI3K inhibitors in CLL therapy Dr. Panasci Lab In summary, BKM120 does not appear to sensitize CLL B-cells to fludarabine or cyclophosphamide in vitro at the low doses used (0.1 µM & 2M) despite being very toxic as a single agent (IC50 between 0.6µM-1.1 µM). This contradicts earlier studies showing that inhibition of PI3K sensitizes leukemic cells to fludarabine (Yu et al., 2005). 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