Auxiliary Material for Parsing variability in CH4 fluxes at a spatially heterogeneous wetland: Integrating multiple eddy covariance towers with high-resolution flux footprint analysis Jaclyn Hatala Matthes, Cove Sturtevant, Joseph Verfaillie, Sara Knox, and Dennis Baldocchi (Dept. Geography, Dartmouth College, Hanover, NH) Journal of Geophysical Research, Biogeosciences, 2014 Introduction This file contains supporting materials (2 figures and 1 table) detailing specific processing steps referred to within the main text of this article. 1 Figure S1. The WorldView-2 reference spectra for the four classes used in the ENVI Spectral Angle Mapper routine were measured by high-resolution GPS plots on 13 May 2012 at the restored wetland sites in the footprint of the permanent flux tower. Reference spectra showed enough differences among the eight spectral bands, particularly in the infrared bands, to achieve high classification accuracy (see Table S1). 2 Classified cells Photosynthetic Veg Aquatic Veg Senesced Veg Water Producer's Accuracy (%) Photosyn. Veg 125 9 2 1 91.2 Reference plots Aquatic Senesced User's Veg Veg Water Accuracy (%) 12 2 1 89.3 109 4 1 88.6 3 75 1 92.6 1 1 137 97.9 87.2 91.5 97.9 Table S1. Accuracy statistics for classification of WorldView-2 imagery into 4 classes. We classified the WorldView-2 satellite imagery by the supervised spectral angle mapper (SAM) routine in ENVI, using endmember spectra outlined in Figure S1. Classification accuracy was determined by the collection of five high-accuracy GPS ground plots of 3-5m in diameter within 200m of the tower footprint of each classification type (separate from the data used for endmember spectra) that were revisited every 2 weeks throughout the study period to determine whether their classification state changed. This table represents the aggregated statistics for classification accuracy across all four images used in this analysis. 3 Figure S2. a) In the hierarchical linear model without a temporal autocorrelation structure, there is strong temporal autocorrelation in the modeled residuals. b) Imposing a temporal autocorrelation structure of autoregressive order-1 (AR-1) on the within-tower random effects removed the temporal autocorrelation pattern within the modeled residuals. 4