Table S3a Predicted apple gene models with significant similarity to MADS8 cDNA sequence. Similarity classed as
greater than 100bp in length and greater than 85% pairwise identity.
Genome Database for
Rosaceae MDP number1
MDP0000366022
MDP0000366019
MDP0000189308
MDP0000289858
MDP0000289858
MDP0000605482
MDP0000508777
MDP0000326390
MDP0000326390
MDP0000220008
MDP0000280009
MDP0000149676
MDP0000326906
MDP0000489384
MDP0000574222
MDP0000126997
1
Pairwise
% identity
99.0
94.0
94.0
94.0
97.0
95.0
100.0
85.0
81.0
84.0
86.0
85.0
85.0
85.0
85.0
85.0
Region of
identity (bp)
757
642
518
471
186
429
146
228
116
212
173
171
173
167
167
162
Score
(bits)
1485
979
789
755
337
696
289
182
63.9
159
153
149
145
141
141
139
E-value
0
0
0
0
4.00E+91
0
8.00E-77
1.00E-44
8.00E-09
2.00E-37
1.00E-35
2.00E-34
3.00E-33
4.00E-32
4.00E-32
2.00E-31
Gene
name
MADS8
MADS9
MADS9
MADS9
MADS9
MADS9
MADS8
MADS7
MADS7
MADS118
MADS104
MADS11
MADS4
MADS6
MADS6
MADS4
Consistently
down-regulated?
Yes
Yes
Yes
Yes
Yes
Yes
Yes
Partially
Partially
No
No
No
No
No
No
No
Individual loci often have more than one gene model
Greatest length of
uninterrupted
identity (bp)
% identity of
region
Identities within
region (bp)
Region of identity
(bp)
Table S3b Apple genomic regions with significant similarity to MADS8 cDNA sequence. Regions identified had one or
many regions of 21bp or greater with 100% identity.
Representative Gene Model
and corresponding apple
MADS-box gene (if named)
Apple genome linkage group
and region of identity
Regions with ≥21bp continuous, uninterrupted identity
MDP0000366022 (MADS8)
LG17:5246491-5252764
1231
1216
98.8
386
3
MDP0000366019 (MADS9)
LG9 :4226116-4231709
1125
1066
94.8
141
MDP0000149676 (MADS11)
LG2:23947679-23947849
171
147
86.0
22
LG2:38310483-38310522
40
38
95.0
23
MDP0000156783
MDP0000326906 (MADS4)
LG131:3736633-3736794
162
139
85.8
30
MDP0000220008 (MADS118)
LG16:6507031-6507206
176
149
84.7
26
MDP0000370413 (MADS18)
LG13:8462372-8462547
176
148
84.1
26
1
LG7 :1746003-1746042
40
37
92.5
23
MDP0000254052
LG43:268711-268754
44
40
90.9
23
MDP0000209705
Regions with ≥21bp continuous, uninterrupted identity but with no gene model or EST support
LG162:18089604-18089625
22
22
100.0
22
no gene model at loci
1
similarity was identified on alternative haplotype 1 of the linkage group stated
2 similarity was identified on alternative haplotype 2 of the linkage group stated
3 similarity was identified on alternative haplotype 3 of the linkage group stated
Arabidopsis
gene with
greatest
similarity
SEP1/2
SEP1/2
AGL6
AGL15
SEP4
SEP3
SEP3
AGL15
AGL22