1 SUPPLEMENTAL METHODS 2 3 Animals 4 All experiments were conducted in accordance with the institutional guidelines 5 of our university for the care and use of experimental animals. Seven microminipigs 6 (Fujimicra Corporation, Shizuoka, Japan) were used (14). Microminipigs are pigs newly 7 developed for experimentation and are smaller than minipigs. They averaged 21.1 months 8 old and 18.3 kg. All pigs had free access during the study period to food and water in a 9 post-operative care cage (75 cm wide, 70 cm long and 90 cm high). Seven posterior parts 10 of intact lateral menisci (LM) were used for analyzing T1rho value, histological 11 evaluation, and biochemical content in order to investigate intact menisci. In intact LM, 12 anterior parts of LM were not examined, since they might be influenced by the surgical 13 procedures. Seven incised MM were examined for analyzing T1rho value and histological 14 evaluation. In incised MM, biochemical content was not measured, since incised MM 15 were so fragile that we could not cut them into small pieces corresponding to each zone. 16 Surgical Procedures 17 With the animal under general anesthesia, each knee was approached through a 18 medial parapatella arthrotomy. After cutting the medial collateral ligament (MCL) and 19 the anterior part of meniscofemoral ligament (Fig. 1a), the knee was maximally flexed 20 and externally rotated to expose a whole MM. The middle part of the MM was incised 21 radially from rim to peripheral (Fig. 1b). The tear was repaired using 4-0 nylon (Bear 22 Medical Corp, Chiba, Japan) by a mattress suture (Fig. 1c). MCL, capsule, and skin were 23 closed in layers with absorbable sutures. Pigs were allowed to move freely in their cages 1 24 without any fixation method. Incised MM and intact LM of the same leg were harvested 25 four weeks after surgery. 26 Histological Examination 27 Specimens of LM and MM were fixed separately in 4% paraformaldehyde for 28 seven days, then dehydrated with a gradient ethanol series. In order to section finely, the 29 specimens were decalcified with 20% EDTA (pH 7.4) at room temperature for 21 days. 30 The specimens were embedded in paraffin and sectioned into 5 μm thick slices sagittally 31 in order to correspond with sagittal T1rho mapping images. The sections that were 32 morphologically close to the T1rho mapping image were stained by hematoxylin and 33 eosin (HE), safranin-o/fast green, and Masson trichrome stainings. 34 Immunohistochemistry 35 The paraffin-embedded sections were deparaffinized and sequentially pretreated 36 with proteinase K, hydrogen peroxidase, and horse serum. For type I collagen, sections 37 were covered with mouse anti-human type I collagen antibody (1:800 in dilution; 38 ab90395, Abcam) at 4°C overnight, then with secondary antibody of biotinylated horse 39 anti-mouse IgG (1:200 in dilution; Vector Laboratories, Burlingame, CA) for 30 minutes 40 at room temperature. For type II collagen, sections were incubated with rabbit anti-human 41 type II collagen antibody (1:1000 in dilution; ab34172, Abcam) at 4°C overnight, then 42 with secondary antibody of biotinylated goat anti-rabbit IgG (1:200 in dilution; Vector 43 Laboratories) for 30 minutes at room temperature. Immunostaining was detected with the 44 Vectastain ABC reagent (Vector Laboratories) followed by diaminobenzidine staining. 45 The sections were counterstained with hematoxylin. 46 Transmission Electron Microscopy 47 In order to examine the morphological difference of cell and extracellular matrix 2 48 among each zone of intact LM, a transmission electron microscope (TEM) was used. The 49 specimens of LM were fixed in 2.5% glutaraldehyde in 0.1M phosphate buffered saline 50 (PBS) for 2 h. The specimens were washed overnight at 4°C in the same buffer and post- 51 fixed with 1% OsO4 buffered with 0.1 M PBS for 2 h. The specimens were then 52 dehydrated in a graded series of ethanol and embedded in Epon 812. Ultrathin sections 53 (90 nm) were collected on copper grids, double-stained with uranyl acetate and lead 54 citrate, and then observed with TEM (H-7100; Hitachi, Tokyo, Japan) 55 Measurement of Sulfated Glycosaminoglycan (GAG) and Hydroxyproline (Collagen) 56 Concentration 57 The posterior part of intact LM was divided into zones in the sagittal direction 58 in order to correspond to the T1rho analysis. Two slices of the central and lateral slice 59 were examined in each meniscus (Fig. 2A, Fig. 3A). Each meniscus was digested for 24 60 h at 60°C in papain buffer (200 mg/ml papain [Sigma-Aldrich, St. Louis, MO]) The GAG 61 concentration of supernatant was determined by the Blyscan-assay (Biocolor Ltd, County 62 Antrim, UK) according to the manufacturer’s instructions. For hydroxyproline content, 63 dissolved sample solution was added to the same volume of 12N concentrated HCl (Wako, 64 Osaka, Japan) and hydrolyzed at 120°C for 3 h. Collagen concentration of hydrolyzed 65 samples was estimated using the Hydroxyproline Colorimetric Assay Kit (Biovision Corp, 66 Milpitas, CA) according to the manufacturer’s instructions. 67 3