Table S1 Features of Erwinia genomes used in this study Species

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Table S1 Features of Erwinia genomes used in this study
Species
Strain
Genbank
accession no.
Genome
status
amylovora
ATCC
49946
CFBP 1430
IL-5
GCA_000027205.1
amylovora
amylovora
amylovora
amylovora
amylovora
amylovora
amylovora
amylovora
amylovora
amylovora
amylovora
amylovora
amylovora
amylovora
amylovora
billingiae
piriflorinigrans
pyrifoliae
pyrifoliae
pyrifoliae
tasmaniensis
tracheiphila
mailotivora
toletana
UPN527
NBRC
12687
MR1
LA637
LA636
LA635
01SFR-BO
ACW56400
Ea644
Ea356
Ea266
CFBP 2585
CFBP 1232
Eb661
CFBP 5888
Ep1/96
Ejp617
DSM12163
Et1/99
PSU-1
BTMARDI
DAPP-PG
735
Complete
Genome
size
(Mb)
3.9
No.
of
CDSs
3565
No.
of
contigs
Contig
N50
(Kb)
Source or Reference
GCA_000091565.1
FR719181FR719212
GCA_000367645.1
GCA_000696075.1
Complete
Draft
3.8
3.8
3735
3857
32
345.9
Draft
Draft
3.8
3.8
3729
3396
18
46
602.7
235.4
GCA_000367685.2
GCA_000513355.1
GCA_000513395.1
GCA_000513415.1
GCA_000367605.2
GCA_000240705.2
GCA_000367665.2
GCA_000367545.2
GCA_000367565.2
GCA_000367585.2
GCA_000367625.2
GCA_000196615.1
CAHS00000000.1
GCA_000027265.1
GCA_000165815.1
GCA_000026985.1
GCA_000026185.1
GCA_000404125.1
Draft
Draft
Draft
Draft
Draft
Draft
Draft
Draft
Draft
Draft
Draft
Complete
Draft
Complete
Complete
Complete
Complete
Draft
3.8
3.9
3.8
3.8
3.8
3.9
3.8
3.8
3.8
3.8
3.8
5.3
4.0
4.1
4.0
4.1
4.1
4.7
4047
3505
3411
3413
3756
3830
3940
3773
3804
3784
3762
4917
3841
3697
3672
4038
3622
4401
31
8
8
8
12
24
41
15
39
14
43
182.4
1883.5
1883.7
1883.7
640.5
339.7
345.5
558.5
232.0
558.4
177.1
26
359.9
332
23.3
GCA_000590885.1
Draft
4.6
3991
75
107.4
(Jock et al. 2002)
National Institute of Technology and
Evaluation (Japan)
(McManus and Jones 1995)
(Smits et al. 2014)
(Smits et al. 2014)
(Smits et al. 2014)
(Jock et al. 2002)
(Rezzonico et al. 2011)
(Rezzonico et al. 2011)
(NORELLI et al. 1984)
(NORELLI et al. 1984)
(Lecomte et al. 1997)
(Jock et al. 2002)
(Kube et al. 2010)
(Smits et al. 2013)
(Kube et al. 2010)
(Park et al. 2011)
(Smits et al., 2010b)
(Kube et al. 2010)
U.S. Department of Agriculture
(France)
(Redzuan et al. 2014)
GCA_000336255.1
Draft
5.3
4737
94
104.2
(Passos da Silva et al., 2013)
(Smits et al. 2010)
(Smits et al. 2010)
(Powney et al. 2011)
References
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differentiation of Erwinia amylovora strains with PFGE analysis. Environ Microbiol 4:106–114.
Kube M, Migdoll AM, Gehring I, et al (2010) Genome comparison of the epiphytic bacteria Erwinia billingiae and E. tasmaniensis
with the pear pathogen E. pyrifoliae. BMC Genomics 11:393.
Lecomte P, Manceau C, Paulin JP, Keck M (1997) Identification by PCR analysis on plasmid pEA29 of isolates of Erwinia amylovora
responsible of an outbreak in Central Europe. European Journal of Plant Pathology 103:91–98.
McManus PS, Jones AL (1995) Genetic fingerprinting of Erwinia amylovora strains isolated from tree-fruit crops and Rubus spp.
Phytopathology 85:1547–1553.
NORELLI JL, ALDWINCKLE HS, BEER SV (1984) Differential Host X Pathogen Interactions Among Cultivars of Apple and
Strains of Erwinia amylovora. 74:136–139.
Park DH, Thapa SP, Choi B-S, et al (2011) Complete genome sequence of Japanese erwinia strain ejp617, a bacterial shoot blight
pathogen of pear. Journal of Bacteriology 193:586–587.
Powney R, Smits THM, Sawbridge T, et al (2011) Genome sequence of an Erwinia amylovora strain with pathogenicity restricted to
Rubus plants. Journal of Bacteriology 193:785–786.
Redzuan RA, Abu Bakar N, Rozano L, et al (2014) Draft Genome Sequence of Erwinia mallotivora BT-MARDI, Causative Agent of
Papaya Dieback Disease. Genome Announc 2:e00375–14.
Rezzonico F, Smits THM, Duffy B (2011) Diversity, evolution, and functionality of clustered regularly interspaced short palindromic
repeat (CRISPR) regions in the fire blight pathogen Erwinia amylovora. Appl Environ Microbiol 77:3819–3829.
Smits THM, Guerrero-Prieto VM, Hernández-Escarcega G, et al (2014) Whole-Genome Sequencing of Erwinia amylovora Strains
from Mexico Detects Single Nucleotide Polymorphisms in rpsL Conferring Streptomycin Resistance and in the avrRpt2 Effector
Altering Host Interactions. Genome Announc 2:e01229–13.
Smits THM, Rezzonico F, Kamber T, et al (2010) Complete genome sequence of the fire blight pathogen Erwinia amylovora CFBP
1430 and comparison to other Erwinia spp. Mol Plant Microbe Interact 23:384–393.
Smits THM, Rezzonico F, López MM, et al (2013) Phylogenetic position and virulence apparatus of the pear flower necrosis pathogen
Erwinia piriflorinigrans CFBP 5888T as assessed by comparative genomics. Syst Appl Microbiol 36:449–456.
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