The Wareham approach to solving genetics word problems – V. 1 ** In this packet, I am attempting to present how I approach genetics problems – a superpower I gained after lots of PRACTICE!! Additionally, many problems can be approached in different ways and solved in different ways – if you keep practicing these and challenging yourself you will build the skills you need to solve them QUICKLY and AVOID ERRORS whatever your approach (Hint: Writing out a full 16 box Punnett square is probably not the BEST approach!) Solving Genetics problems 1. Read the problem CAREFULLY a. What are they asking for? What answer are you trying to find? i. As you have seen – these problems can ask for a lot of different things. Make sure you know what to focus on. b. What information are you given in the question? i. The question must provide you with some information required to solve the problem. Expect to see information about parents when asked about possible outcomes in the offspring OR information about outcomes in the offspring when asked about geno/phenotypes of the parents. ii. If you encounter a piece of information that seems odd (strange ratios, more than 2 phenotypes) you are likely dealing with an exception to Mendelian genetics – MORE ON THIS LATER! 2. Provided parental Genotypes (a) or Phenotypes (b) a. If a question provides you with the parental genotypes and wants to know outcomes for the offspring of the cross – SMILE! That’s an easy question – create a Punnett square or just calculate the probability by looking at the parental genotypes. i. Example - What phenotypic ratio would we expect from a cross between parents with the genotypes AABb x AaBb? 1. Option 1 – create a Punnett Square, look at the outcomes, determine how many outcomes would correspond to each phenotype. 2. Option 2 – start with trait one and consider what phenotypes are possible in the offspring and their ratios (AA,Aa: 4/4 or 1; aa: 0.) Do the same for trait two (BB, Bb: ¾; bb: ¼.) Then consider possible combinations of those phenotypes in the offspring and their probabilities: A_B_ (1 x ¾), A_bb (1 x ¼), no other combinations are possible given the parental genotypes. Phenotypic ratio: 3 dominant for both traits: 1 dominant for trait 1 and recessive for trait 2. b. If a question provides you with information about parental phenotypes you need to interpret the information, try to determine the parental genotypes and proceed from there. i. Determine which trait is dominant and which trait is recessive. ii. Remember, true breeding means homozygous and carrier means heterozygous (individuals show the dominant phenotype but are “carriers” of the harmful recessive allele) iii. My own observation: Many problems start out with a P generation that consists a parents that are true breeding for contrasting traits (AA x aa) creating F1 offspring that are all heterozygous and all display the dominant phenotype, and then crossing the F1 offspring (HETEROZYGOUS) produces predictable genotypic and phenotypic ratios in the F2 offspring. (MORE ON PREDICTABLE RATIOS LATER) 3. Provided with information about the offspring a. If you already have the genotypes of offspring remember the two alleles of a genotype came from each of the parents – one from mom and one from dad. Look for homozygous recessive outcomes in the offspring!! That tells us that each parent has at least one recessive allele in their genotype. b. If you are given phenotypes for the offspring: i. Determine which trait is dominant and which trait is recessive ii. Look at the number of phenotypes for each trait you are dealing with in the offspring. This will help you determine if each trait exhibits normal dominant recessive inheritance, if one or both traits show incomplete dominance, if one trait demonstrates epistasis over the other, or if you are dealing with multiple alleles or polygenic inheritance (quantitative traits.) iii. Determine what genotypes could correspond to the phenotypes present in the offspring. Use _ to identify where either a dominant or recessive allele could be present. iv. Look at the ratios of the phenotypes in the offspring. Compare to the predictable ratios to try and interpret the parents. Saving time 4. Allelic combinations a. When you have parental genotypes and need to set up a Punnett square to see outcomes in the offspring you first figure out the combination of alleles that could show up in the gametes produced by each parent. b. For AaBb there are four combinations: AB Ab aB ab c. If the parent is homozygous (dominant or recessive) for either trait or both traits, there are fewer combinations. d. Only include one of each type of combination for each parent. i. Example: AABb x AaBb 1. Possible combinations for AABb parent: AB or Ab 2. Combinations for AaBb parent: AB Ab aB ab AB Ab aB ab AB AABB AABb AaBB AaBb Ab AABb AAbb AaBb Aabb no need to write out 16 boxes!! if one parent is AABB or aabb – There is only one possible combination of alleles 5. Predictable Ratios a. Some ratios we see over and over again and they can help us solve problems quickly. i. Two parents, heterozygous for one trait Aa X Aa 1. 3 dominant:1 recessive (phenotypic ratio) 2. 1:2:1 genotypic ratio ii. Two parents, heterozygous for two traits AaBb X AaBb 1. 9 : 3 : 3 : 1 a. 9 dominant for both traits b. 3 dominant for trait 1, recessive for trait 2 c. 3 recessive for trait 1, dominant for trait 2 d. 1 recessive for both traits 2. 1 : 2 : 1 : 2 : 4 : 2 : 1 : 2 : 1 * probably won’t need this a. 1 : 2 : 1 AABB AABb AAbb b. 2 : 4 : 2 AaBB AaBb Aabb c. 1 : 2 : 1 aaBB aaBb aabb iii. Two parents, one heterozygous, one homozygous (dominant or recessive) 1. 1:1 genotypic ratio 2. 1:1 phenotypic ratio if homozygous recessive iv. Numbers of actual offspring may not EXACTLY fit the predicted ratios – check to see if they are close. 6. Not-so predictable ratios AKA exceptions to Mendelian genetics a. Lethal alleles – some recessive alleles are lethal so individuals who are homozygous recessive die before birth or shortly after i. Look for: 1. A question about one trait where there are fewer than 4 outcomes, like 2:1 2. A question about two traits where there are 12 outcomes instead of 16 indicates – one of the two traits is lethal in the recessive form b. Codominance – heterozygotes display two versions of a trait at the same time – this means heterozygotes won’t be grouped in with c. d. e. f. the “dominant” phenotype in a phenotypic ratio. With codominance there isn’t one dominant trait i. Example: IA and IB alleles for human blood type are codominant – individuals with one of each have type AB blood Incomplete dominance – heterozygotes have their own distinct phenotype – this means heterozygotes won’t be grouped in with the “dominant” phenotype in a phenotypic ratio i. Look for: 1. A question about one trait where there are 3 different phenotypes 2. A question about two traits where there are 6 different phenotypes instead of 4 Epistasis – gene at one location controls expression of a gene at another location i. Look for: 1. A question about 2 traits where 3 different phenotypes are discussed Multiple Alleles – more than 2 alleles for a single trait i. Write out the order of dominance!! ii. Look for: 1. More than two possible phenotypes for a trait 2. Only as many phenotypes as there are types of alleles Polygenic traits – two or more genes have an additive effect on a single trait i. Look for: 1. More than two possible phenotypes for a trait 2. Quantitative traits – increase based one the number of dominant alleles ii. Remember: phenotypic classes – 1 = number of alleles in the genotype. Pedigrees 7. Dominant, recessive, or sex-linked inheritance? 8. Find the genotypes you know for sure. 9. Remember, actual outcomes in a family may not match predicted ratios a. Example: Four children heterozygous parents COULD all be recessive rather the 3 dominant and 1 recessive CHECK YOUR WORK!! This is all I can think of right now. Hopefully some of it is useful. We will go through this together tomorrow prior to the OQQ and some examples. As much as I want this to be totally comprehensive, I’m sure I neglected some things.