DAVID H. SHERMAN, PH.D. DIRECTOR, CENTER FOR CHEMICAL GENOMICS MARTHA J. LARSEN, M.S. DIRECTOR, HTS, SIRNA, HCS LABORATORY CENTER FOR CHEMICAL GENOMICS THE UNIVERSITY OF MICHIGAN, LIFE SCIENCES INSTITUTE 210 WASHTENAW AVENUE ANN ARBOR, MICHIGAN 48109-2216 734-615-9537; FAX 734-763-6492 DATE Dear name, We are delighted to assist you in your grant type application entitled enter proposal name. This proposal involves description. [If appropriate: This work is based upon your details on previous targets/screens that were conducted in the Center for Chemical Genomics (CCG) in the University of Michigan’s Life Sciences Institute.] The HTS director and her research staff have extensive experience with assay development and screening technology. For example, we perform over 20 screens per year director to add details. In total, we have performed 80+ screens for UM faculty, external academic groups and both large and small pharmaceutical companies. The results of 35+ CCG projects have been published and 40+ CCG pilot screens have received subsequent grant support. Specific to your proposal, director fills in details here. With your experience in please fill in details, this project should be successful in please fill in details here. Another purpose of this letter is to outline the capabilities of the CCG, which includes modern screening instrumentation, chemical libraries, RNAi collections and high content analysis. Of particular note is our 180,000+ chemical library, which includes ~ 30,000 natural product extracts, ~100,000 diverse compounds and a number of focused libraries. The HTS Core staff work hand-in-hand with your laboratory members to develop, miniaturize and implement the assay. In addition, CCG staff and faculty advisors are committed to working closely with you after the HTS campaign; we will assist in data interpretation and in designing appropriate follow-up analyses to separate false positives from informative hits. Finally, we can help you in the design of appropriate structure-activity studies that will advance your initial “hits” to more potent and selective chemical tools. Often, this process will also involve the Hans G. Vahlteich Medicinal Chemistry Core, which is staffed by experienced, industry-trained medicinal chemists. Finally, the CCG enters all results into a custom database, M-screen, which is an effective tool for storing, retrieving and archiving screening data. MScreen also allows comparative meta-analysis of multiple screening targets, which helps separate off-target effects from hits of interest. Through MScreen, you can also upload results to public databases, such as PubChem. We greatly look forward to working with you on your project. Sincerely, David H. Sherman Hans W. Vahlteich Professor of Medicinal Chemistry Professor of Chemistry Professor of Microbiology & Immunology Director, CCG Martha J. Larsen Assistant Research Scientist Director, HTS, siRNA, HCS Laboratory CCG Resources Chemical and RNAi Libraries 150,000+ diverse small molecule compounds 2,446 FDA-approved drugs and known bioactives 1200+ focused libraries (autophagy, kinases, epigenetics) 2830 fragment library 30,000+ natural product extracts 20M in silico library available for searching siRNA Dharmacon human and mouse druggable genomes Liquid Handling Robotics Mosquito X1 (TTP Labtech), a hit-picking liquid handler with 96- and 384-well plate formats, 251200 nL positive displacement tips for confirmation, serial dilutions and reagent/sample transfers Beckman Biomek FX multi/multi- 96-well pipetter head & 384 pipetter head Beckman Biomek FX - 384-well nanoliter HDR (pin tool) Sciclone ALH3000 – 384- and 1536-well nanoliter V&P pin tool Thermo Multidrop and Micromultidrop 96-384 liquid dispensers Thermo Combi Multidrops liquid dispensers Thermo Combo nl liquid dispenser for 96, 384 & 1536 plates Catalyst Express Robotic arm and plate storage Bio-Tek ELx405 and 406 Plate Washers CaliperLS Twister II plate hotel Detection equipment BMGLabtech PHERAstar high-speed, multifunction plate reader Detection capabilities including 96-, 384-well: absorbance, fluorescence, fluorescence polarization, time-resolved fluorescence, time-resolved FRET, and luminescence Molecular Devices FlexStation3 with 5 assay formats: kinetic, endpoint, spectrum, well-scanning and Flex mode for bottom read capacity in calcium mobilization and membrane potential assays. Application technologies in 96-, 384-well: absorbance, fluorescence intensity, fluorescence polarization, luminescence and time-resolved fluorescence with dual monochromators. HyperCyt/Accuri-The HyperCyt high throughput liquid handling front-end moves microliter samples from 384-well plates and rapidly delivers them to the Accuri flow cytometer. Both bead and cell samples can be used and a 384-well plate can be analyzed in 10 min providing a throughput of over 2000 compounds per hour. MDS Analytical Technologies-ImageXpress Micro Cellular Imaging and Analysis System for automated acquisition and analysis of images for high throughput cell-based screening. Includes Acuity Xpress Informatics and MDCStore database. PE EnVision Multimode Plate Reader Detection for all non-isotopic detection technologies, including fluorescence intensity, fluorescence polarization, time-resolved fluorescence (TRF), luminescence (enhanced) and absorbance (monochromator), BRET and AlphaScreen in 96-, 384 and 1536-well formats. Informatics Web database using Oracle: Relational database of compounds, plate inventory, results Results browsing or searching Comparison of results among different screens Structure similarity searches on external library to find compounds for SAR Links to public databases for chemical and biological profiling ICM Chemist (Molsoft LLC) Chemical spreadsheet, Chemical structure clustering, SAR Analysis