DNA Webquest Name___________________ Visit the following websites to explore how experiments produced clues to the structure of DNA or RNA. Learn about the relationship between the structure of nucleic acids and their functions. Objectives: Students will be able to analyze experiments that contributed to current understanding of DNA structure for important clues. explain how base pair rules effect the forming of the rungs in DNA. compare the shapes of the nucleotides to explain how hydrogen bonds are formed that hold base pairs together. describe the process of DNA replication. 1. Explore the DNAinteractive Finding the Structure webpages. http://www.dnai.org/a/index.html Watch an interview for each scientist. Click on pieces of the puzzle to examine the evidence for clues to the structure of DNA. Rosalind Franklin—X-ray: describe how the pattern of the x-ray diffraction from the side gives clues to the structure. Would a view at the end of the molecule give any clues? __________________ _______________________________ _______________________________ _______________________________ _______________________________ Linus Pauling—triple helix: What was the key piece of information works against the triple helix model? ______________________________________________ Sugar-phosphate backbones ______________________________________________ ______________________________________________ ______________________________________________ Which type of helix works with the data? (circle one: single, double, or triple) bases Watson and Crick—models: Which bases did their work predict would pair together? a. Adenine and cytosine + guanine and thymine b. Adenine and thymine + guanine and cytosine c. Adenine and guanine + cytosine and thymine Name the two characteristics of the bases they used to make the model. 1.____________________________________________________________ 2.____________________________________________________________ Erwin Chargaff—base pair rule: Was the ratio of A to T and G to C consistent with the model developed by Watson and Crick? Why? _________________ _____________________________________________________________ _____________________________________________________________ 2. Explore the structure of DNA. Use the Learn more about buttons. Rotate the molecule and use the atom button to locate where the carbon, nitrogen, oxygen, phosphorous, and hydrogen atoms are found. http://www.pbs.org/wnet/dna/dna_explorer/index2.html a. to explore the bases b. to explore the sugar/phosphate backbone Which compounds form the backbone? 1._________________________________ 2._________________________________ Which type of compound forms the rungs? ________________________________ Label the parts of the DNA molecule. The smaller nitrogenous bases are pyrimidines called: C is _________________________ T is _________________________ The larger nitrogenous bases are purines called: G is _________________________ A is _________________________ In DNA, the phosphate is negatively charged and bonds to a sugar called _____________________________ Compare the number of hydrogen bonds between C-G and T-A____________________________________________ 3. Build a DNA Molecule at: http://learn.genetics.utah.edu/content/molecules/builddna/ Complete assembly of a section of DNA. Proceed down the page to read more about DNA. Which bases bond together to form the rungs of the DNA molecule? _____________________________________________________________ Why do these bases form pairs? Why would other combinations not work well? _________________________________________________________ _____________________________________________________________ 4. Click the link for DNA unzip. http://www.dnalc.org/resources/3d/23-dnaunzip.html What shape does DNA have before the process of replication begins? _____________________________________________________________ How does the sequence of ATGC in one strand allow construction of a second strand? _______________________________________________________ _____________________________________________________________ _____________________________________________________________ What is the term for the strand that can form hydrogen bonds to the original? _____________________________________________________________ 5. Click the link for the Mechanism of Replication (basic) at the bottom of the page in the right hand column and answer the following questions. An enzyme ________________ the DNA into _____________ strands to prepare for replication. 6. Click the Copying the Code button, Pieces of the Puzzle, and find Semiconservative replication puzzle piece. http://www.dnai.org/a/index.html The original strands _____. a. Both originals go into the same molecule and an all new molecule is formed. Conservative model b. Are broken down and the original nucleotide sections used to construct two new molecules. c. Are separated and each becomes the template for building the complementary strand in new molecules. Semiconservative model Additional Resources: A Reader’s Guide to the Double Helix, Brown University, http://www.brown.edu/Courses/BI0020_Miller/dh/guide.html Linus Pauling and the Race for DNA, Oregon State University, http://scarc.library.oregonstate.edu/coll/pauling/dna/video/1973v.3.html DNA Replication, PBS Learning Media, http://www.pbslearningmedia.org/resource/biot11.sci.life.gen.structureofdna /the-structure-of-dna/ The Talking Glossary of Terms, National Human Genome Research Institute, National Institutes of Health, http://www.genome.gov/Glossary/ Transcribe and Translate a Gene, Learn.Genetics, Genetic Science Learning Center, University of Utah, http://learn.genetics.utah.edu/content/molecules/transcribe/ e-Books and Article Library, Scitable, natureEducation, http://www.nature.com/scitable/topic/genetics-5 3-D Animation Library, Cold Spring Harbor Laboratory, http://www.dnalc.org/resources/3d/ DNA Workshop (shockwave animation), PBS, http://www.pbs.org/wgbh/aso/tryit/dna/shockwave.html