AP Biology Summer Assignment Mrs. Burroughs Easley High School/2015-2016 Welcome to Advanced Placement Biology! I am excited to see that you’ve made the commitment to study Biology at a high level and at an accelerated pace. I’m looking forward to a great year with you and hope that your experience in this course will be both challenging and rewarding. AP Biology is a course designed to be the equivalent of a two-semester, introductory biology course taken during a college student’s freshman year. This course will require dedication, self-motivation, and both independent and collaborative work this summer and throughout the school year. The summer assignment that follows is crucial and must be completed by the first day of the 2015-2016 school year. This assignment will NOT be accepted late. If you do not have this assignment on the first day of class, expect to be asked to drop the class. It is a major test grade for Q1, so be sure to have it ready to turn in at the beginning of the first day of class. Please follow the directions carefully so that you will receive full credit for this assignment. Failure to follow direction below will result in a deduction of points from your final grade on this assignment. Summer Assignment: You will need to pick up your textbook from EHS in June. Come to the EHS campus during the summer hours posted on the website. The school is not open on Fridays. We are using: Starr, Cecie and Taggart, Ralph, 2006 “ Biology: The Unity and Diversity of Life”, 11th edition, Thomson Brooks/Cole: California. Read chapters 1-3. These chapters focus on an introduction to biology, life’s chemical basis and the molecules of life. Once you have read the chapters, complete the following assignment. There is a copy of this assignment on the EHS website. Please copy it, save it, and insert your answers into the document. Print your completed work and turn in on the first day of class. Chapter 1: Invitation to Biology 1. List and describe the levels of organization in nature. Begin with the atom and end with the biosphere. 2. Classification of life on Earth is based on three domains. Name and describe the three domains of life. 3. After reading section 1.4, explain how evolution has lead to the diversity of life on our planet. 4. Scientific inquiry: a. Describe the difference in inductive and deductive reasoning. b. Describe the difference in qualitative and quantitative data. c. Why are hypotheses only used in deductive reasoning? d. Review the following words: hypothesis, data, controlled experiment, control, independent variable and dependent variable. Read the attached article from Campbell and Reece on a field experiment concerning mimicry in snakes and identify the following from the experiment: Question Hypothesis Control group Experimental group Independent variable Dependent variable Summary of Data/Conclusion A Case Study in Scientific Inquiry: Investigating Mimicry in Snake Populations The story begins with a set of observations and generalizations from discovery science. Many poisonous animals are brightly colored, often with distinctive patterns that stand out against the background. This is called “warning coloration” because it apparently signals "dangerous species" to potential predators. But there are also mimics. These imposters look like poisonous species, but are actually relatively harmless. An example is the flower fly, a non-stinging insect that mimics the appearance of a stinging honeybee. The geographic distribution of the Carolina snakes made it possible to test the key prediction of the mimicry hypothesis. Mimicry should help protect king snakes from predators, but only in regions where coral snakes also live. The mimicry hypothesis predicts that predators in non-coral snake areas will attack king snakes more frequently than will predators that live where coral snakes are present. What is the function of such mimicry? What advantage does it confer on the mimics? In 1862, British scientist Henry Bates proposed the reasonable hypothesis that mimics such as flower flies benefit when predators confuse them with the harmful species. In other words, the deception may be an evolutionary adaptation that evolved by reducing the mimic’s risk of being eaten. As intuitive as this hypothesis may be, it has been relatively difficult to test, especially with field experiments. But in 2001, biologists David and Karin Pfennig, along with William Harcombe, an undergraduate at the University of North Carolina, designed a simple but elegant set of field experiments to test Bates’ mimicry hypothesis. The team investigated a case of mimicry among snakes that live in North and South Carolina. A poisonous snake called the eastern coral snake has warning coloration: bold, alternating rings of red, yellow, and black. Predators rarely attack these snakes. It is unlikely that predators learn this avoidance behavior, as a first strike by a coral snake is usually deadly. Natural selection may have increased the frequency of predators that have inherited an instinctive recognition and avoidance of the warning coloration of the coral snake. A nonpoisonous snake named the scarlet king snake mimics the ringed coloration of the coral snake. Both king snakes and coral snakes live in the Carolinas, but the king snake’s geographic range extends farther north and west into regions where no coral snakes are found. The geographic distribution of the Carolina snakes made it possible to test the key prediction of the mimicry hypothesis. Mimicry should help protect king snakes from predators, but only in regions where coral snakes also live. The mimicry hypothesis predicts that predators in non-coral snake areas will attack king snakes more frequently than will predators that live where coral snakes are present. Field Experiments with Artificial Snakes To test the mimicry hypothesis, Harcombe made hundreds of artificial snakes out of wire covered with a claylike substance called plasticine. He fashioned two versions of fake snakes: an experimental group with the red, black, and yellow ring pattern of king snakes; and a control group of plain brown artificial snakes as a basis of comparison. The researchers placed equal numbers of the two types of artificial snakes in Held sites throughout North and South Carolina, including the region where coral snakes are absent. After four weeks, the scientists retrieved the fake snakes and recorded how many had been attacked by looking for bite or claw marks. The most common predators were foxes, coyotes, and raccoons, but black bears also attacked some of the artificial snakes. The data fit the key prediction of the mimicry hypothesis. Compared to the brown artificial snakes, the ringed snakes were attacked by predators less frequently only in field sites within the geographic range of the poisonous coral snakes. Designing Controlled Experiments The snake mimicry experiment provides an example of how scientists design experiments to test the effect of one variable by canceling out the effects of any unwanted variables, such as the number of predators in this case. The design is called a controlled experiment, where an experimental group (the artificial king snakes, in this case) is compared with a control group (the brown artificial snakes). Ideally, the experimental and control groups differ only in the one factor the experiment is designed to test—in our example, the effect of the snakes' coloration on the behavior of predators. What if the researchers had failed to control their experiment? Without the brown mock snakes as a control group, the number of attacks on the fake king snakes in different geographic regions would tell us nothing about the effect of snake coloration on predator behavior at the different field sites. Perhaps, for example, fewer predators attacked the artificial king snakes in the eastern and southern field sites simply because fewer predators live there. Or maybe warmer temperatures in those regions make predators less hungry. The brown artificial snakes enabled the scientists to rule out such variables as predator density and temperature because those factors would have had equal effects on the control group and experimental group. Yet predators in the eastern and southern field sites attacked more brown artificial snakes than "king snakes." The clever experimental design left coloration as the only factor that could account for the low predation rate on the artificial king snakes placed within the range of coral snakes. It was not the absolute number of attacks on the artificial king snakes that counted, but the difference between that number and the number of attacks on the brown snakes. A common misconception is that the term controlled experiment means that scientists control the experimental environment to keep everything constant except the one variable being tested. But that's impossible in field research and not realistic even in highly regulated laboratory environments. Researchers usually "control" unwanted variables not by eliminating them through environmental regulation, but by ramming their effects by using control groups. David Pfennig and his colleagues made artificial snakes to test a prediction of the mimicry hypothesis: that king snakes benefit from mimicking the warning coloration of coral snakes only in regions where poisonous coral snakes are present. In field sites where coral snakes were present, predators attacked far fewer artificial king snakes than brown artificial snakes. The warning coloration of the "king snakes" afforded no such protection where coral snakes were absent. In fact, at those field sites, the artificial king snakes were more likely to be attacked than the brown artificial snakes, perhaps because the bright pattern is particularly easy to spot against the background. The field experiments support the mimicry hypothesis by not falsifying the key prediction that imitation of coral snakes is only effective where coral snakes are present. The experiments also tested an alternative hypothesis that predators generally avoid all snakes with brightly colored rings, whether or not poisonous snakes with that coloration live in the environment. That alternative hypothesis was falsified by the data showing that the ringed coloration failed to repel predators where coral snakes were absent. Campbell, Neil A. Biology, 6th ed. Redwood City, CA: Benjamin/Cummings Publishing Company, Inc., 2004. Chapter 2: Life’s Chemical Basis 1. Create a mind/concept map using the following terms. You may draw this or type this on a separate sheet of paper. Use these resources to help you. http://www.studygs.net/mapping/ and http://www.mindtools.com/pages/article/newISS_01.htm anion atom cation chemical equilibrium compound covalent bond(polar & nonpolar) electron 2. 3. 4. 5. electronegativity element energy level hydrogen bond ion ionic bond isotope matter molecule neutron potential energy product radioisotope reactant structural formula valence electron Summarize the important concepts of acids and bases. What are salts, and why are they important to cells? What are buffer systems, and what role do they play in the human body? Draw 4 water molecules. Label their charges and show how they would connect through hydrogen bonding. 6. Fill out the following chart with information regarding water’s emergent properties: Emergent Property Description- Why does this property occur? Example and Importance to Living Organisms Cohesive Properties Cohesion Adhesion Surface Tension Modification of Temperature High specific heat Evaporative cooling Ice as an insulator Universal solvent Polarity Chapter 3: Molecules of Life 1. What is an organic compound? 2. What are functional groups? Name the 7 common functional groups described in your book and show their structure. Give examples of where these groups may be found. 3. Answer question #1 on p. 49 of your textbook in the critical thinking portion of the chapter review. 4. Describe the relationship between these words: monomer, polymer, condensation, and hydrolysis. 5. What is a macromolecule? 6. What are the building blocks of carbohydrates? 7. Compare the structure and functions of glycogen, starch, and cellulose. Why do they have different properties? 8. What are the building blocks of lipids? 9. Why are saturated and unsaturated fatty acids different at room temperature? 10. Describe the phospholipids of the cell membrane, and explain why they align themselves the way they do in the membrane. 11. Explain the structure of sterols and identify three sterols important in the cell. 12. Describe the formation of a protein from primary through quaternary structure. 13. What are the building blocks of proteins? 14. What is meant by the phrase, a protein’s structure dictates its function? 15. What happens when a protein becomes denatured? 16. Name 4 different groups of proteins and describe their functions. 17. Describe the structure of DNA using the terms double helix, complementary, antiparallel (3’ and 5’). 18. What are the building blocks of nucleic acids? 19. What are four structural differences between DNA and RNA? We will be reading Survival of the Sickest: The Surprising Connections between Disease and Longevity by Sharon Moalem and Jonathan Price (Harper Collins, 2008) this year. You need to purchase a copy of this book over the summer. Poor Richard’s Bookstore in Easley has some on hand and students receive a discount. If you have any questions about this assignment, contact me through my school email. I’ll see you in August. I’ll be in room 144. I am looking forward to sharing this adventure with you. I LOVE Biology, and hope you do, too. Enjoy your summer. Mrs. Burroughs