1 Please contact with any questions and return original form to: Biological Safety Officer Office of Environmental Health & Safety Box 1914 401-863-3087 IBC # __________ Date ____________ Action __________________________ ▲For EH&S Use Only ▲ Please refer to the IBC Policy at http://www.brown.edu/biosafety Principal Investigator (Last Name, First Name) Biological Research Authorization Title: Academic Title: Email address: Department/Campus Box: Division: Laboratory Location(s) if unchanged: Current IBC # Amendment # and Approval Date of Original Application (e.g. amendment #3, original application approval date 2/29/10): Office Phone #: Lab Phone #: Laboratory Supervisor (if not PI) Printed Name and Approval Signature: Include A copy of the original Biological Research Authorization project overview (question 12 a-c) and a summary statement explaining the reason for the amendment with this amendment. Select Type(s) of Change: A. Change of Location (laboratory, animal housing, equipment room etc.): (List all rooms in which this research will impact the space or equipment including the change of location. Include rooms that are not changing and indicate “no change.” If the new location of the research is a shared space, the responsible PI for the shared space must complete the form on page 2): Add B. Remove No Change Building Room & Responsible Person Purpose Equipment (e.g., BSC, Incubator, etc.) Change of Biological Agent: If the scope of your work will include several different agents please list them in a single amendment. If the agents added in this amendment are genetically modified or if the object of your research includes modification, complete part D. If there is an available therapeutic treatment or Post Exposure Prophylaxis for the agent(s) please include an attachment . * (Indicate which agents are still in use on the related protocol and indicate “no change” and which are added or discontinued): Add C. Remove No Change Agent Strain BSL Genetically Modified? Comments Significant Change of Procedure or Agent: Complete the relevant parts of the Biological Research Authorization BS0-1* form including a brief overview of the new scope of research containing sufficient information to ensure adequate review of the protocol to determine compliance with the Brown University Biosafety Program, local, state, and federal regulations. *If the change in the procedure or agent will require a change to your Exposure Control Plan (i.e., changes in disinfection procedures, lab practices or engineering controls) please include an updated Exposure Control Plan. The template can be found at the following URL: http://www.brown.edu/Administration/EHS/biological/ ) As Principal Investigator, I accept responsibility for the safe conduct of work with this material. I will ensure that all personnel receive training in regard to proper safety practices and protective equipment needed for this work. Signature (Principal Investigator) __________________________________________________ (Signature may be an inserted electronic image of your actual signature) Brown University Environmental Health and Safety Created: November 2011 Reviewed: March 2013 BSO-3 Date: ___________ 2 This form letter must be electronically signed by the PI listed on page 2 with whom you share lab/storage space, housing (when applicable) or equipment. Please send to all applicable PI’s. Once signed, this form must be emailed to you (the Biological Research Authorization applicant) and forwarded to the Biological Safety Officer or emailed directly to the Biological Safety Officer. Dear Members of the Brown Institutional Biosafety Committee (IBC), I have reviewed, evaluated and understand the project entitled: ___________________________________________ submitted to the IBC by: ______________________________________. I believe the information contained in this application is accurate and complete. I agree to abide by the provisions of the application, the Exposure Control Plan (where applicable to my space, equipment or personnel), current NIH Guidelines, the NIH Guide for Grants and Contracts, Brown University policies and procedures, and local, state, and federal regulations. If I feel that the procedures listed in the application or ECP are not being followed, I will address this issue with the applicant PI and if necessary, the Biological Safety Officer. I accept responsibility for the safe conduct of this work ONLY as it applies to my space, equipment or personnel. I will ensure that all applicable personnel receive training in regard to proper safety practices and protective equipment needed for this work. Electronic Signature (Principal Investigator) __________________________________________________ Brown University Environmental Health and Safety Created: November 2011 Reviewed: March 2013 BSO-3 Date: ____________________ 3 I. SYNTHETIC/RECOMBINANT DNA EXPERIMENTS: I. SYNTHETIC/RECOMBINANT DNA EXPERIMENTS: (Indicate “yes or no” for each question per relevant part [I. and A-D] to determine the section of the NIH Guidelines under which your research falls. Please note: inclusion in one section may exclude your work from another e.g., if your work can best be categorized as fitting under section III-D-4-a of the Guidelines, it won’t likely also fall under sections in III-F). All researchers using synthetic/recombinant nucleic acids must make this determination. ) http://oba.od.nih.gov/rdna/nih_guidelines_new.htm YES NO The recombinant or synthetic nucleic acid molecules in your experiment can neither replicate nor generate nucleic acids that can replicate in any living cell (e.g., oligonucleotides or other synthetic nucleic acids that do not contain an origin of replication or contain elements known to interact with either DNA or RNA polymerase), and (2) are not designed to integrate into DNA, and (3) do not produce a toxin that is lethal for vertebrates at an LD50 of less than 100 nanograms per kilogram body weight. If yes, the molecules meet all 3 of the above criteria e.g., “they can neither replicate…” or “are not designed to integrate…” or “do not produce a toxin…” , your research is categorized under section III-F-1 of the NIH Guidelines. Are the recombinant or synthetic nucleic acid molecules in your experiment in organisms, cells , or viruses or have they been modified or manipulated (e.g., encapsulated into synthetic or natural vehicles) to render them capable of penetrating cellular membranes.? If no, your research is categorized under III-F-2 of the NIH Guidelines. Do the recombinant or synthetic nucleic acid molecules in your experiment consist solely of the exact recombinant or synthetic nucleic acid sequence from a single source that exists contemporaneously in nature? If yes, your research is categorized under section III-F-3 of the NIH Guidelines. Do the recombinant or synthetic nucleic acid molecules in your experiment consist entirely of nucleic acids from a prokaryotic host, including its indigenous plasmids or viruses when propagated only in that host (or a closely related strain of the same species), or when transferred to another host by well established physiological means? If yes, your research is categorized under III-F-4 of the NIH Guidelines. Do the recombinant or synthetic nucleic acid molecules in your experiment consist entirely of nucleic acids from a eukaryotic host including its chloroplasts, mitochondria, or plasmids (but excluding viruses) when propagated only in that host (or a closely related strain of the same species)? If yes, your research is categorized under III-F-5 of the NIH Guidelines. Do the recombinant or synthetic nucleic acid molecules in your experiment consist entirely of DNA segments from different species that exchange DNA by known physiological processes, though one or more of the segments may be a synthetic equivalent? See Appendices A-I through A-VI, Exemptions Under Section III-F-6— Sublists of Natural Exchangers, for a list of natural exchangers that are exempt from the NIH Guidelines. If yes, your research is categorized under III-F-6 of the NIH Guidelines. Does your experiment involve the use of genomic DNA molecules that have acquired a transposable element, provided the transposable element does not contain any recombinant and/or synthetic DNA? If yes, your research is categorized under III-F-7 of the NIH Guidelines. Do the recombinant or synthetic nucleic acid molecules in your experiment present a significant risk to health or the environment (see Section IV-C-1-b- (1)-(c) as determined by the NIH Director, with the advice of the RAC, and following appropriate notice and opportunity for public comment) NOR fall under any other sections of the NIH Guidelines? See Appendix C, Exemptions under Section III-F-8 for other classes of experiments which are exempt from the NIH Guidelines. If your experiment does not pose a significant risk to health or the environment AS DETERMINED BY THE NIH DIRECTOR ETC., your research is categorized under III-F-8 of the NIH Guidelines after approval from NIH/RAC. If your research does not pose a significant risk to health or the environment AND has NOT been reviewed by the NIH Director, leave this question blank. Does your research involve breeding two different transgenic rodents or a transgenic rodent and a non-transgenic rodent with the intent of creating a new strain of transgenic rodent that can be housed at BL1 containment AND (1) Both parental rodents can be housed under BL1 containment; and (2) neither parental transgenic rodent contains the following genetic modifications: (i) incorporation of more than one-half of the genome of an exogenous eukaryotic virus from a single family of viruses; or (ii) incorporation of a transgene that is under the control of a gammaretroviral long terminal repeat (LTR); and (3) the transgenic rodent that results from this breeding is not expected to contain more than one-half of an exogenous viral genome from a single family of viruses? If yes, this procedure is categorized under Appendix C-VIII of the NIH Guidelines. A. TISSUE CULTURE EXPERIMENTS INVOLVING SYNTHETIC/RECOMBINANT DNA YES NO Do the recombinant or synthetic nucleic acid molecules in your experiment that are propagated and maintained in cells in tissue culture contain less than one-half of any eukaryotic viral genome (all viruses from a single family being considered identical – see Appendix C-IX-E, Footnotes and References of Appendix C)? If yes, your research is categorized under Appendix C-1 of the NIH Guidelines. Do any recombinant or synthetic nucleic acid experiments involve Risk Groups 3, 4 or restricted organisms or nucleic acids from Risk Groups 3, 4 or restricted organisms? If no, your research is categorized under Appendix C-1 of the NIH Guidelines. Do any recombinant or synthetic nucleic acid experiments involve introduction of genes coding for molecules toxic for Brown University Environmental Health and Safety Created: November 2011 Reviewed: March 2013 BSO-3 4 vertebrates? If no, your research is categorized under Appendix C-1 of the NIH Guidelines. Do any recombinant or synthetic nucleic acid experiments involve infectious viruses? If no, research is categorized under Appendix C-1 of the NIH Guidelines Do any recombinant or synthetic nucleic acid experiments involve defective viruses in the presence of helper viruses? If no, your research is categorized under Appendix C-1 of the NIH Guidelines. Do any recombinant or synthetic nucleic acid experiments involve whole plants regenerated from plant cells and tissue cultures? If yes AND they remain axenic cultures even though they differentiate into embryonic tissue and regenerate into plantlets, your research is categorized under Appendix C-1 of the NIH Guidelines. B. EXPERIMENTS INVOLVING E.COLI K-12, YEAST, KLUYVEROMYCES LACTIS BACILLUS SUBTILIS/LICHENIFORMIS HOSTVECTOR SYSTEMS YES NO Do any experiments involve Risk Groups 3, 4 or restricted organisms or nucleic acids from Risk Groups 3, 4 or restricted organisms? If no, your research is categorized under Appendix C-II (for E. coli K-12) or Appendix C-III (for Saccharomyces cerevisiae and Saccharomyces uvarum), Appendix C-IV (for Kluyveromyces lactis) or Appendix C-V (for Bacillus subtilis/licheniformis). . Do any experiments involve introduction of genes coding for molecules toxic for vertebrates? If no, your research is categorized under Appendix C- II (for E. coli K-12) or Appendix C-III (for Saccharomyces cerevisiae and Saccharomyces uvarum), Appendix C-IV (for Kluyveromyces lactis or Appendix C-V (for Bacillus subtilis/licheniformis). Will there be any large-scale experiments (more than 10 L of culture)? If no, your research is categorized under Appendix CII (for E. coli K-12) or Appendix C-III (for Saccharomyces cerevisiae and Saccharomyces uvarum), Appendix C-IV (for Kluyveromyces lactis) or Appendix C-V (for Bacillus subtilis/licheniformis). If using asporogenic Bacillus subtilis or asporogenic Bacillus licheniformis, are you using a strain which does not revert to a spore-former with a frequency greater than 10-7? If yes, your research is categorized under Appendix C-V (for Bacillus subtilis/licheniformis). C. SYNTHETIC/RECOMBINANT DNA EXPERIMENTS THAT REQUIRE IBC APPROVAL AND DO NOT FALL INTO THE ABOVE SECTIONS YES NO Is any human or animal pathogen (defined as a Risk Group 2, Risk Group 3, Risk Group 4, or Restricted Agents) used as either the host organism or as a vector? If yes, your research is categorized under III-D-1 of the NIH Guidelines. Is any recombinant or synthetic nucleic acid molecules from Risk Group 2, Risk Group 3, Risk Group 4 or restricted agents cloned into nonpathogenic prokaryotic or lower eukaryotic host-vector systems? If yes, your research is categorized under III-D-2 of the NIH Guideilnes. Do recombinant or synthetic nucleic acid or RNA experiments involve the use of infectious DNA or RNA Viruses or Defective DNA or RNA Viruses in the Presence of Helper Virus in Tissue Culture Systems? If yes, your research is categorized under III-D-3 of the NIH Guidelines. Do recombinant or synthetic nucleic acid or RNA experiments involve the use of defective animal or plant viruses in the presence of helper virus in tissue culture systems? If yes, your research is categorized under III-D-3 of the NIH Guidelines. Do recombinant or synthetic nucleic acid or RNA experiments involve whole animals (Section III-D-4) or plants (Section III-D5)? Indicate which________________ . Do experiments involve more than 10 liters of culture? If yes, your research is categorized under III-D-6 of the NIH Guidelines. Do experiments involve influenza viruses generated by recombinant or synthetic methods (e.g., generation by reverse genetics of chimeric viruses with reassorted segments, introduction of specific mutations)? If yes, your research is categorized under III-D-7of the NIH Guidelines. Do experiments NOT fall under sections III-A, III-B, III-C, III-D, III-F of the NIH Guidelines AND involve the formation of recombinant or synthetic nucleic acid molecules containing no more than two-thirds of the genome of any eukaryotic virus? If yes, your research is categorized under III-E-1 of the NIH Guidelines. Do experiments NOT fall under sections III-A, III-B, III-C, III-D, III-F of the NIH Guidelines AND involve nucleic acid molecule-modified whole plants, and/or experiments involving recombinant or synthetic nucleic acid molecule-modified organisms associated with whole plants? If yes, your research is categorized under III-E-2 of the NIH Guidelines. Do experiments NOT fall under section III-D-4 and involve the generation of rodents in which the animal's genome has been altered by stable introduction of recombinant or synthetic nucleic acid molecules, or nucleic acids derived therefrom, into the germ-line (transgenic rodents)but can be conducted at BSL-1? If yes, your research is categorized under III-E-3-a of the NIH Guidelines. . Brown University Environmental Health and Safety Created: November 2011 Reviewed: March 2013 BSO-3 5 D. EXPERIMENTS THAT REQUIRE IBC, RAC REVIEW AND NIH DIRECTOR APPROVAL BEFORE INITIATION (III-A), EXPERIMENTS THAT REQUIRE NIH/OBA AND IBC APPROVAL BEFORE INITIATION (III-B), AND EXPERIMENTS THAT REQUIRE IRB AND IBC APPROVAL AND NIH/OBA REGISTRATION BEFORE INITIATION APPROVAL BEFORE INITIATION (III-C) YES NO Does the research involve the transfer of drug resistance trait to an organism that does not acquire it normally (if it could compromise the use of the drug to control disease agents in humans, animal or agriculture) ? If yes, your research is categorized under III-A-1 of the NIH Guidelines. . Does the experiment involve the formation of recombinant or synthetic nucleic acid containing genes coding for the synthesis of molecules toxic for vertebrates? If yes, your research is categorized under III-B-1 of the NIH Guidelines. Does the experiment involve human gene transfer experiments? If yes, your research is categorized under III-C-1 of the NIH Guidelines. E. Describe below, specific host(s), vector(s), DNA(s) and what proteins will be produced? (NOTE: Recombinant/synthetic nucleic acid molecules work that falls under any of the III-F sections or Appendices CI-CVIII excluding excepted paragraphs A, need not be described here and you may skip directly to part F of this section. Otherwise, please complete.) Host Cells:_________________________________________________________________________________________________ __________________________________________________________________________________________________________ __________________________________________________________________________________________________________ Vector(s): _________________________________________________________________________________________________ __________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ Inserted DNA/Synthetic Nucleic Acid Molecule: __________________________________________________________________________________________________________ __________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ Protein produced (if applicable):________________________________________________________________________________ ____________________________________________________________________________________________________________ ____________________________________________________________________________________________________________ THE EXPERIMENTS IN THIS AUTHORIZATION CAN BE CATEGORIZED UNDER NIH GUIDELINES SECTION(S)(list all that apply):_____________________________________________________________________________________ F. Can your experiment or part of your experiment be listed under sections III-A, III-B, III-C, III-D, III-E-1 or III-E-2 of the NIH Guidelines? Yes If yes, complete parts G and H of this application. If your project includes experiments that fall under sections III-A, III-B, III-C, III-D, III-E-1, III-E-2 III-F, III-E-3a or Appendices CI-CVIII OF NIH Guidelines, complete parts G and H of this application. No If no, a.) Describe why your research (or part of your research) fits into section III-F, III-E-3a or Appendices CI-CVIII of the NIH Guidelines and provide a brief summary of your research. b.) Describe key features of any key features cell line, virus or bacteria used in this project and if the experiments will result in acquisition of new characteristics e.g., enhanced virulence, infectivity, drug resistance, or change in host range. Give references if appropriate. c.) Describe the source of the DNA/synthetic nucleic acid molecules, the nature of the inserted DNA/synthetic nucleic acid molecules sequences, the host(s) and vector(s) to be used, if an attempt will be made to obtain expression of a foreign gene and what protein will be produced. Be sure to account for whether or not the genes involved or expressed have potential: toxicity, allergenicity or other risk to research personnel d.) Percent of the pathogen genome present in the vector (kilobases of the parent pathogen in the vector and packaging cell combined). e.) Outline the general procedures and techniques that will be employed e.g., cell culture, bacterial culture, DNA isolation. f.) Complete a copy of the Exposure Control Plan (page 13). ____________________________________________________________________________________________________ _____________________________________________________________________________________________________ _____________________________________________________________________________________________________ ______________________________________________________________ INCLUDE AS ATTACHMENT IF NECESSARY G. If your experiment or part of your experiment can be listed under sections III-A, III-B, III-C, III-D, III-E-1 or III-E-2 of the NIH Guidelines, please complete the following fields. In submitting this application, you agree to understand and comply with the Principal Investigator responsibilities outlined in section IV-B-7 of the NIH Guidelines found here: http://oba.od.nih.gov/oba/rac/Guidelines/NIH_Guidelines.htm#_Toc7261589 Brown University Environmental Health and Safety Created: November 2011 Reviewed: March 2013 BSO-3 6 i. Provide a brief summary of your research involving recombinant or synthetic nucleic acid molecules in non-technical language INCLUDE AS ATTACHMENT IF NECESSARY: ________________________________________________________________________________________________________ ________________________________________________________________________________________________________ ________________________________________________________________________________________________________ ________________________________________________________________________________________________________. ii. Will the experiment be carried out in E. coli or other prokaryotic host? Yes No If yes, specify: _________________________________________________________________________________________ Host strains: ___________________________________________________________________________________________ Vectors: _______________________________________________________________________________________________ Inserted DNA/synthetic nucleic acid molecules (include names of genes and organisms from which they were cloned): _______________________________________________________________________________________________________ Will whole virus or provirus be cloned? Yes No NIH Guideline Section: _________________________ Recommended Biosafety Level: __________________________ iii. Will the experiment be carried out in eukaryotic cells? Yes No If yes, specify: _________________________________________________________________________________________ Host strains: ___________________________________________________________________________________________ Vectors: _______________________________________________________________________________________________ Inserted DNA/synthetic nucleic acid molecules: _______________________________________________________________________________________________________ Helper virus or packaging cells if used: ____________________________________________________________________ What fraction of a eukaryotic viral genome is contained in the recombinant DNA molecules (including vector and insert)? <1/2 >1/2 but <2/3 >2/3 NIH Guidelines Section: _________________________ Recommended Biosafety Level: __________________________ iv. Will the experiment be carried out using whole plants or animals as hosts? Yes No If yes, specify: _________________________________________________________________________________________ Host strains: ___________________________________________________________________________________________ Vectors: _______________________________________________________________________________________________ Inserted DNA/synthetic nucleic acid molecules: ______________________________________________________________ ________________________________________________________________________________________________________ Helper virus or packaging cells if used: ____________________________________________________________________ What fraction of a eukaryotic viral genome is contained in the recombinant DNA/synthetic nucleic acid molecule? <2/3 >2/3 NIH Guidelines Section: _________________________ Recommended Biosafety Level: __________________________ v. Will any of the sequences code for toxins? Yes (LD50)__________ No vi. Will VSV-G be used for pseudotyping and are you aware that this can increase the risk of exposure through absorption and inhalation along with injection and ingestion? Yes No vii. If using adeno or lentivirus, will you be using third or fourth generation systems for safety? Yes No viii. If using oncogene inserts, a DNA sequencing library shall be kept. Indicate the location of these records____________________________ H. SPECIFIC NUCLEIC ACID INFORMATION a.) Describe the source of the DNA/synthetic nucleic acid molecules, the nature of the inserted DNA/synthetic nucleic acid molecules sequences, the host(s) and vector(s) to be used, if an attempt will be made to obtain expression of a foreign gene and what protein will be produced. Be sure to account for whether or not the genes involved or expressed have potential: toxicity, allergenicity or other risk to research personnel b.) Attach vector maps c.)Describe key features of the agent, virus or bacteria used in this project and if the experiments will result in acquisition of new characteristics e.g., enhanced virulence, infectivity, drug resistance, or change in host range. Give references if appropriate. d.) Percent of the pathogen genome present in the vector (kilobases of the parent pathogen in thevector and packaging cell combined). e.) Will the research involve the use of antibiotic selection markers? Yes No If yes, list the markers and microbial agents used (e.g. neomycin resistance marker in E. coli) f.) Complete a copy of the Exposure Control Plan (page 13). INCLUDE AS ATTACHMENT IF NECESSARY _________________________________________________________________________________________________________________ _________________________________________________________________________________________________________________ _________________________________________________________________________________________________________________ ______________________________________________________________________________________________________________ --------------------------------------------------------------------------------------------------------------------------------------- Brown University Environmental Health and Safety Created: November 2011 Reviewed: March 2013 BSO-3 7 The application form (summary and any attachments) must provide sufficient detail for the Biological Safety Committee to understand and evaluate recombinant or synthetic nucleic acid molecules of the project in order to review the application. For attached published references, please highlight pertinent paragraphs or sentences. Submissions that lack detail or are illegible will be deferred from action and returned for revision and resubmission. Incomplete applications will be returned. Certification and Signature The information contained in this application is accurate and complete. I am familiar with and agree to abide by the provisions of the current NIH Guidelines, the NIH Guide for Grants and Contracts, Brown University policies and procedures, and local, state, and federal regulations. In addition, I agree to abide by the following requirements: a. I will initiate no recombinant or synthetic nucleic acid molecule research subject to the NIH Guidelines until that research has been reviewed by the Biological Safety Committee. b. I will follow appropriate biosafety level laboratory techniques in the research. c. I will comply with all shipping requirements for recombinant or synthetic nucleic acid materials. d. I will make available to the laboratory staff copies of the approved protocols that describe the potential biohazards and the precautions to be taken. e. I will have a specific protocol in place for post-exposure prophylaxis and/or treatment. f. I will train the laboratory staff in good microbiological practices and techniques required to ensure safety for this project, in the procedures for dealing with accidents, and in waste management procedures, prior to any project work and at least annually thereafter. g. I will ensure that all laboratory staff are listed with the Office of Environmental Health & Safety. h. I will submit in writing a request for approval from the Biological Safety Committee for any significant modifications to the study, facilities, or procedures. i. I will supervise staff, and correct work errors and conditions that could result in breach of the NIH Guidelines or Brown University policy. j. I will submit to the Biosafety Officer, the Biological Safety Committee, and the Office of Recombinant DNA Activities at NIH (if applicable), reports of any research related accident, exposure incident, release of recombinant or synthetic nucleic acid molecules to the environment, problems pertaining to the implementation of biological and physical containment procedures, or violations of the NIH Guidelines Please identify either yourself or another individual who has significant and appropriate microbiological education and experience to conduct the work at the biosafety level requested and with the biohazards identified. Circle one: Self Other ____________________________________________ Name of Identified Individual Signature _________________________________________ Electronic Signature of Identified Individual As Principal Investigator, I accept responsibility for the safe conduct of work with this material. I will ensure that all personnel receive training in regard to proper safety practices and protective equipment needed for this work. Brown University Environmental Health and Safety Created: November 2011 Reviewed: March 2013 BSO-3