Name______________________________ Date________________ DNA Extraction: Strawberry Background: The long, thick fibers of DNA store the information for the functioning of the chemistry of life. DNA is present in every cell of plants and animals. The DNA found in strawberry cells can be extracted using common, everyday materials. We will use an extraction buffer that is made up of salt and soap to help isolate DNA from a strawberry cell. Some of the items/conditions used in this lab are listed below with their purpose. Shampoo or dishwasher soap *found in buffer helps to dissolve the lipids found on the cell membrane and nuclear membrane Sodium chloride (salt) *found in buffer helps to dissolve proteins that are bound to the DNA. It also helps to keep the proteins dissolved in the aqueous layer so they don’t precipitate in the alcohol along with the DNA. Ethanol or isopropyl alcohol causes the DNA to precipitate because it does not dissolve in alcohol. When DNA comes out of solution it tends to clump together, which makes it visible. The long strands of DNA will wrap around the stirrer or transfer pipet when it is swirled at the interface between the two layers. The more concentrated the rubbing alcohol, the less likely DNA will dissolve in it. Meat Tenderizer: used to help break down proteins and to destroy an enzyme known as protease that can break DNA into small pieces. Temperature: it is important to keep the alcohol cold so that DNA will dissolve in it better. For best results, it is best to keep on solutions used in the lab cold. Pre-lab questions: 1. What do you think the DNA will look like? 2. Where in the cell is DNA found? 3. Why do you think it is important to dissolve the proteins around the DNA? 4. What does it mean to precipitate? Why does DNA precipitate out in rubbing alcohol? Materials: heavy duty ziploc bag 1 strawberry (frozen) 20 mL DNA extraction buffer (soapy, salty water) cheesecloth funnel 50mL vial / test tube glass rod, inoculating loop, or popsicle stick 15 mL ethanol Procedure: 1. Place one strawberry (2 if they are small) in a Ziploc bag. 2. Smash/grind up the strawberry using your fist and fingers for 2 minutes. Careful not to break the bag!! 3. Add the provided 20mL of extraction buffer (salt and soap solution) and a PINCH of meat tenderizer to the bag. 4. Kneed/mush the strawberry in the bag again for 1 minute avoiding too many bubbles. 5. Assemble your filtration apparatus as shown to the right. 6. Pour the strawberry slurry into the filtration apparatus and let it drip directly into your test tube. Fill about half way with liquid. 7. Slowly pour cold ethanol into the tube by gently tipping the test tube (see teacher instructions) 8. Dip the loop or glass rod into the tube where the strawberry extract and ethanol layers come into contact with each other. 9. Show your results to the teacher and get a signature ________________________ Your Turn! You are now going to create a procedure that you believe may alter the amount of DNA that is extracted. The more creative, the better! You may remove a step, alter a step, or add a step. Remember, good scientists only change on variable at a time. In the space below, rewrite the procedure you are going to use step-by-step. Make sure you highlight the change you are making to the original procedure. Once you finish writing your new procedure, you must write a hypothesis explaining what you think is going to happen and WHY! Before you perform your new procedure, you must get teacher approval. NEW PROCEDURE *you may use additional paper HYPOTHESIS (MAKE SURE YOU INDICATE WHY) Teacher signature____________________________________________ Conclusions: 1. Did the data support your hypothesis? Explain. If not, why do you think the results did not match your prediction? 2. Do you think you could use a similar procedure with animal cells? Explain. 3. Based on the introduction, there was nothing said about breaking the cell wall of the strawberry cells. What part of the procedure to you believe helped to break up the cell wall? 4. A student was attempting to follow the procedure step-by-step but forgot to complete one of them. When the lab was complete, he saw DNA, but it did not look like a long thread. Instead, it was chopped up into small pieces. What did the student forget to add? Explain.