ELECTRONIC SUPPLEMENTARY MATERIAL Establishment of laurel forest vegetation in adjacent secondary forest in central Japan Landscape and Ecological Engineering Keiko Sasaki1,2, Tomohiro Ichinose3, Tomoko Doko1,4,5, Ikuko Imoto6, Fred Jopp2,7 Corresponding Author: Sasaki, Keiko. Keiko.Sasaki@bio.uni-giessen.de 1 Keio Research Institute at SFC, Keio University, 5322 Endo, Fujisawa, Kanagawa 252-8520, Japan 2 Department of Animal Ecology & Systematics, Justus Liebig University Giessen, Heinrich-Buff Ring 26-32, 35392 Giessen, Germany. Supplementary Material 1 Map showing the locations of (a) Kanagawa Prefecture in Japan, (b) the study site, and (c) the old-growth and abandoned secondary forests surveyed. Supplementary Material 2 Analyses including Aucuba japonica (a) Mean (±SE) for comparison of height, coverage, and density between old-growth and secondary forests. Mean (±SE) in parentheses indicates height, coverage, and density of lucidophyllous species, and those that showed significantly higher values are emphasized by bold font. A. japonica was included. Forest Type Old-growth Forest Secondary Forest Number of Quadrats 18 78 Area (m²) 450 1950 12.3±1.3 (12.6±1.2) 12.7±1.5 (13.1±1.9) 8.4±1.0 (8.3±1.0) 8.3±1.0 (8.2±1.1) Shrub Layer 2.53±1.53 (2.52±1.50) 2.57±1.36 (2.45±1.29) Herb Layer 0.331±0.285 (0.351±0.288) 0.331±0.287 (0.360±0.292) Tree Layer 73.7±32.6 (65.1±35.7) 90.0±13.9 (18.9±33.3) Sub-Tree Layer 22.9±28.2 (20.3±26.9) 22.2±28.1 (11.6±20.7) Shrub Layer 43.6±23.2 (41.8±24.5) 70.1±21.1 (54.3±21.4) Herb Layer 12.2±14.5 (11.6±14.5) 6.52±5.62 (5.80±5.53) Density of Trees, Trees 2.83±1.89 (2.28±1.56) 1.59±1.30 (0.359±0.558) Saplings, and Saplings 11.7±5.70 (11.6±5.54) 12.6±4.53 (11.0±4.44) Seedlings per 25m² Seedlings 16.2±8.34 (14.7±8.19) 15.2±6.51 (12.8±6.27) Height (m) Tree Layer Sub-Tree Layer Coverage (%) *1 *2 *** *** * ** *** *1 p value of all species, *2 p value of lucidophyllous species. Levels of significance (p) are denoted with * p < 0.05, ** p < 0.01, and *** p < 0.001 (b) The density of lucidopyllous a) sapling and seedling and b) shrub species as a function of distance from the vegetation border. Filled circles and solid line in the plot (a) indicate the observed density and regression line for sapling, and crosses and dotted line for seedling. A. japonica was included. * p < 0.05, ** p < 0.01, *** p < 0.001 Supplementary Material 3 Mean (±SE) for comparison of height, coverage, density, and number of species between old-growth and secondary forests. Mean (±SE) in parentheses indicates height, coverage, density, and number of lucidophyllous species, and those that showed significantly higher values are emphasized by bold font. Aucuba japonica was excluded from height, coverage, and density. Forest Type Old-growth Forest Secondary Forest Number of Quadrats 18 78 Area (m²) 450 1950 12.3±1.3 (12.6±1.2) 12.7±1.5 (13.1±1.9) 8.4±1.0 (8.3±1.0) 8.3±1.0 (8.2±1.1) Shrub Layer 2.53±1.53 (2.81±1.57) 2.57±1.36 (2.93±1.46) Herb Layer 0.331±0.285 (0.328±0.288) 0.331±0.287 (0.306±0.277) Tree Layer 73.7±32.6 (65.1±35.7) 90.0±13.9 (18.9±33.3) Sub-Tree Layer 22.9±28.2 (20.3±26.9) 22.2±28.1 (11.6±20.7) Shrub Layer 43.6±23.2 (37.1±25.8) 70.1±21.1 (40.4±23.8) Herb Layer 12.2±14.5 (10.8±14.2) 6.52±5.62 (4.10±5.24) Density of Trees, Trees 2.83±1.89 (2.28±1.56) 1.59±1.30 (0.359±0.558) Saplings, and Saplings 11.7±5.70 (8.83±4.25) 12.6±4.53 (5.99±3.58) ** Seedlings per 25m² Seedlings 16.2±8.34 (12.3±7.49) 15.2±6.51 (8.10±5.09) * Species number All 57 (34) 81 (33) Tree species 20 (11) 24 (10) Small tree species 6 (4) 8 (4) Shrub species 7 (6) 14 (6) Herb species 4 (2) 10 (3) Vine species 13 (5) 16 (5) Fern species 7 (6) 9 (5) 16.8±4.0 (14.2±3.8) 18.8±4.3 (11.6±2.4) 5.22±1.80 (4.06±1.43) 6.38±2.05 (3.28±1.47) * * Small tree species 2.17±0.707 (1.94±0.539) 1.71±0.884 (1.36±0.837) * ** Shrub species 3.50±1.15 (3.39±0.979) 3.23±1.08 (2.50±0.716) Herb species 1.61±0.916 (1.39±0.608) 2.58±1.01 (1.86±0.552) *** Vine species 2.94±1.35 (2.22±1.22) 4.31±1.67 (2.18±0.893) ** Fern species 1.33±1.81 (1.17±1.47) 0.615±0.970 (0.423±0.712) Height (m) Tree Layer Sub-Tree Layer Coverage (%) Species number All per 25m² Tree species *1 *2 *** *** * *** *** *** *** * *1 p value of all species, *2 p value of lucidophyllous species. Levels of significance (p) are denoted with * p < 0.05, ** p < 0.01, and *** p < 0.001 Supplementary Material 4 Results of generalized linear models for non-lucidophyllous species. (a) The density of non-lucidopyllous (a) sapling and seedling, (b) tree, (c) small tree, and (d) shrub species as a function of distance from the vegetation border. Filled circles and solid line in the plot (a) indicate the observed density and regression line for sapling, and crosses and dotted line for seedling. * p < 0.05, ** p < 0.01, *** p < 0.001 (b) The number of all non-lucidophyllous species and that of non-lucidophyllous tree, small tree, shrub, herb, vine, and fern species in relation to environmental variables in the secondary forest. Non-Lucidophyllous D LS LW W S H C A AIC species All 0.0077** 0.083*** Tree species 0.0084* 0.057 -0.0031* 0.042 Small tree species Shrub species 274.7 -0.011 113.6 170.2 0.018 Vine species 0.30*** 0.063 0.031 0.33*** 364.1 -0.0073** 0.13* Herb species Fern species -0.035* 160.6 254.2 0.012 73.1 Environmental variables selected under Akaike Information Criterion (AIC) are denoted. * p < 0.05, ** p < 0.01, *** p < 0.001 D distance from the vegetation border, LS relative light intensity in summer, LW relative light intensity in winter, W soil moisture, S slope angle, H soil hardness, C overstory coverage, A difference in altitude from the top transect Supplementary Material 5 Species’ preferring forest based on occurrence frequency (%) and average of cumulative coverage (%, in parentheses). Old-growth Forest (18 quadrats) Occurrence Frequency % Life (Average of Cumulative form Coverage %) Secondary Forest (78 quadrats) Occurrence Frequency % (Average of Cumulative Coverage %) *1 *2 * * Old-growth forest preferring species (lucidophyllous species) Camellia japonica L. ST 100 (23.67) 74 (12.94) Castanopsis sieboldii (Makino) Hatus. ex T.Yamaz. et Mashiba T 94 (42.51) 44 (6.62) *** *** Microtropis japonica (Franch. et Sav.) Hallier f. S 94 (10.11) 81 (5.45) *** Damnacanthus indicus C.F.Gaertn. var. indicus S 72 (7.39) ・ *** *** Ficus nipponica Franch. et Sav. V 72 (0.45) 3 (0.09) *** *** ST 67 (7.00) 17 (5.37) *** *** Ilex integra Thunb. T 39 (5.00) ・ *** *** Dryopteris erythrosora (D.C.Eaton) Kuntze F 33 (0.22) 1 (+) *** *** Elaeagnus pungens Thunb. S 33 (0.11) 6 (+) Lemmaphyllum microphyllum C.Presl F 22 (0,78) ・ Abies firma Siebold et Zucc. T 17 (+) 4 (+) Aucuba japonica Thunb. var. japonica S 94 (5,.62) Trachelospermum asiaticum (Siebold et Zucc.) Nakai V 78 (+) Liriope muscari (Decne.) L.H.Bailey H 61 (0.06) 95 (0.29) Quercus glauca Thunb. T 22 (0.50) 60 (6.41) Euonymus fortunei (Turcz.) Hand.-Mazz. V 6 (+) 56 (4.31) Neolitsea sericea (Blume) Koidz. T 6 (+) 33 (0.27) Akebia trifoliata (Thunb.) Koidz. V 6 (+) 63 (+) *** *** Carpinus tschonoskii Maxim. T 6 (0.56) 55 (30.87) *** *** Parthenocissus tricuspidata (Siebold et Zucc.) Planch. V 11 (+) 51 (0.03) ** Pleioblastus chino (Franch. et Sav.) Makino H 17 (0.06) 50 (0.30) * * Quercus serrata Murray T 11 (0.56) 41 (20.77) * ** Acer palmatum Thunb. T ・ 41 (11.28) Lonicera japonica Thunb. V ・ 36 (0.07) ** ** Callicarpa japonica Thunb. S ・ 28 (1.41) * * Stachyurus praecox Siebold et Zucc. ST ・ 21 (4.50) * * Picrasma quassioides (D.Don) Benn. T ・ 21 (0.69) * * Ophiopogon japonicus (Thunb.) Ker Gawl. H 78 (+) 83 (0.14) Quercus salicina Blume T 72 (21.28) 49 (11,.86) Cinnamomum japonicum Siebold ex Nakai T 44 (1.17) 56 (1.65) Hedera rhombea (Miq.) Bean V 44 (0.06) 51 (0.17) Machilus thunbergii Siebold et Zucc. T 39 (2.95) 41 (13.23) Litsea coreana H.Lév. T 33 (7.89) 17 (2.00) Dryopteris bissetiana (Baker) C.Chr. F 33 (0.06) 21 (0.09) Ardisia crenata Sims S 33 (+) 55 (0.07) Torreya nucifera (L.) Siebold et Zucc. T 22 (1,22) 22 (+) Kadsura japonica (L.) Dunal V 22 (+) 13 (+) Ligustrum japonicum Thunb. ST 17 (0.06) 35 (0.67) F 11 (0.17) 15 (0.18) ST 11 (+) 10 (0.14) S 11 (+) 6 (+) H ・ 8 (+) Eurya japonica Thunb. var. japonica ** ** *** *** * * 100 (15.67) * *** 95 (1.29) * *** Secondary forest preferring species (lucidophyllous species) *** *** ** ** *** *** * * Secondary forest preferring species (non-lucidophyllous species) Species of unclear preferences (lucidophyllous species) Dryopteris lacera (Thunb.) Kuntze Cephalotaxus harringtonia (Knight ex Forbes) K.Koch var. harringtonia Ardisia japonica (Thunb.) Blume Ophiopogon ohwii Okuyama ** *** ** Supplementary Material 5 (continued) Species’ preferring forest based on occurrence frequency (%) and average of cumulative coverage (%, in parentheses). Old-growth Forest (18 quadrats) Occurrence Frequency % Life (Average of Cumulative form Coverage %) Secondary Forest (78 quadrats) Occurrence Frequency % (Average of Cumulative Coverage %) Species of unclear preferences (non-lucidophyllous species) Aphananthe aspera (Thunb.) Planch. T 44 (+) 63 (0.08) Deutzia scabra Thunb. S 11 (0.17) 29 (1.12) Cerasus jamasakura (Siebold ex Koidz.) H.Ohba T 22 (2.50) 27 (11.60) T 6 (1.11) 24 (5.21) Acer pictum Thunb. subsp. dissectum (Wesm.) H.Ohashi f. dissectum (Wesm.) H.Ohashi Celtis sinensis Pers. T ・ 17 (4.27) Aristolochia debilis Siebold et Zucc. V 6 (0.06) 17 (+) Dumasia truncata Siebold et Zucc. V ・ 14 (+) Wisteria floribunda (Willd.) DC. V 22 (0.28) 14 (+) ST ・ 12 (0.64) Viola grypoceras A.Gray var. grypoceras H ・ 12 (0.03) Pteris cretica L. F Idesia polycarpa Maxim. T Pourthiaea villosa (Thunb.) Decne. var. villosa 17 (0.11) 9 (0.06) ・ 8 (3.53) Athyrium niponicum (Mett.) Hance F ・ 8 (+) Dioscorea japonica Thunb. V 6 (+) 6 (+) Citrus iyo Hort. ex Tanaka, nom. nud. S ・ 5 (0.01) Ligustrum obtusifolium Siebold et Zucc. S ・ 5 (+) Aristolochia kaempferi Willd. V 11 (+) 4 (+) Albizia julibrissin Durazz. T 6 (1.67) 4 (+) Dioscorea tokoro Makino V ・ 4 (+) Disporum smilacinum A.Gray H ・ 4 (+) Rhus succedanea L. T ・ 4 (1.79) Dryopteris uniformis (Makino) Makino F ・ 4 (0.01) Zelkova serrata (Thunb.) Makino T 6 (+) 3 (0.27) Kalopanax pictus (Thunb.) Nakai, excl. typo T ・ 3 (1.03) Persicaria filiformis (Thunb.) Nakai ex W.T.Lee H ・ 3 (+) Cayratia japonica (Thunb.) Gagnep. V ・ 3 (+) Quercus myrsinifolia Blume T ・ 3 (+) 6 (+) 1 (+) Species recorded less than 4 times Ficus erecta Thunb. var. erecta ST Akebia quinata (Houtt.) Decne. V ・ 1 (+) T ・ 1 (+) Styrax japonica Siebold et Zucc. ST ・ 1 (0.03) Daphne pseudomezereum A.Gray S ・ 1 (+) Lygodium japonicum (Thunb.) Sw. F ・ 1 (+) Pinellia ternata (Thunb.) Breitenb. H ・ 1 (+) Onychium japonicum (Thunb.) Kunze F ・ 1 (+) Oplismenus undulatifolius (Ard.) Roem. et Schult. H ・ 1 (+) Rosa multiflora Thunb. H ・ 1 (+) Hydrangea paniculata Siebold S ・ 1 (0.15) Broussonetia kazinoki Siebold S ・ 1 (+) Rhododendron kaempferi Planch. var. kaempferi S ・ 1 (0.03) Cyrtomium falcatum (L.f.) C.Presl F ・ 1 (+) ・ 1 (+) Ginkgo biloba L. Pittosporum tobira (Thunb.) W.T.Aiton S Lithocarpus edulis (Makino) Nakai T 22 (1.50) ・ ST 17 (2.00) ・ Rhus sylvestris Siebold et Zucc. *1 *2 Supplementary Material 5 (continued) Species’ preferring forest based on occurrence frequency (%) and average of cumulative coverage (%, in parentheses). Old-growth Forest (18 quadrats) Occurrence Frequency % Life (Average of Cumulative form Coverage %) Quercus acutissima Carruth. T 11 (2.78) Secondary Forest (78 quadrats) Occurrence Frequency % (Average of Cumulative Coverage %) ・ Dryopteris hondoensis Koidz. F 11 (0.06) ・ Pueraria lobata (Willd.) Ohwi V 6 (+) ・ Rhus ambigua Lavalee ex Dippel V 6 (0.06) ・ Cornus controversa Hemsl. ex Prain T 6 (0.56) ・ Microlepia marginata (Panzer) C.Chr. F 6 (+) ・ Liliaceae sp. H 6 (+) ・ *1 p value of occurrence frequency, *2 p value of average of cumulative coverage. Levels of significance (p) are denoted with * p < 0.05, ** p < 0.01, and *** p < 0.001 Life forms: T tree species, ST small tree species, S shrub species, H herb species, V vine species, F fern species · species that were not recorded in the corresponding forest (+) average of cumulative coverage is < 0.01%. *1 *2 Non-Lucidophyllous Species (54 Species) Lucidophyllous Species (39 Species) Supplementary Material 6 Changes in species composition based on occurrence frequencies. Old-growth Forest Preferring OG1+2 OG3 OG4 2.5 Forest (8) (4) (6) (4) Microtropis japonica OLD IV 4 III 4 Camellia japonica OLD IV 4 IV 4 Castanopsis sieboldii OLD IV 4 III 2 Eurya japonica OLD III 1 III 1 Elaeagnus pungens OLD I 2 II 2 Ficus nipponica OLD IV 4 I Damnacanthus indicus OLD IV 4 I Dryopteris erythrosora OLD III Ilex integra OLD II 3 Lemmaphyllum microphyllum OLD II Abies firma OLD I I Aucuba japonica SEC IV 4 IV 4 Trachelospermum asiaticum SEC III 4 III 4 Liriope muscari SEC III 3 II 4 Quercus glauca SEC I 1 I 1 Euonymus fortunei SEC I Neolitsea sericea SEC I Quercus salicina UNC IV 2 III 3 Ophiopogon japonicus UNC III 4 III 2 Hedera rhombea UNC II 3 I 1 Ardisia crenata UNC II 2 I 1 Machilus thunbergii UNC II 1 II 3 Dryopteris bissetiana UNC II 1 II Kadsura japonica UNC II 1 Cinnamomum japonicum UNC I 4 II 1 Ligustrum japonicum UNC I 2 1 Litsea coreana UNC I 2 II 3 Torreya nucifera UNC I 1 I Cephalotaxus harringtonia UNC I 1 Dryopteris lacera UNC I Ardisia japonica UNC II Ophiopogon ohwii UNC Lithocarpus edulis II Dryopteris hondoensis I Microlepia marginata I Dryopteris uniformis Cyrtomium falcatum Pittosporum tobira Quercus myrsinifolia Average Number of Species per Subplot 16.1 15.5 10.7 10.5 Akebia trifoliata SEC I 1 Parthenocissus tricuspidata SEC I 1 Pleioblastus chino SEC 1 II Quercus serrata SEC II 2 Carpinus tschonoskii SEC I 3 Callicarpa japonica SEC 3 Acer palmatum SEC Lonicera japonica SEC Stachyurus praecox SEC Picrasma quassioides SEC Wisteria floribunda UNC II 1 II Pteris cretica UNC II Aphananthe aspera UNC I 3 II 1 Deutzia scabra UNC I 1 Albizia julibrissin UNC I Cerasus jamasakura UNC 1 II Acer pictum UNC 1 Aristolochia debilis UNC 1 2 Dioscorea japonica UNC I Celtis sinensis UNC Dumasia truncata UNC Viola grypoceras UNC Pourthiaea villosa UNC Citrus iyo UNC Aristolochia kaempferi UNC Ligustrum obtusifolium UNC Athyrium niponicum UNC Idesia polycarpa UNC 7.5 (4) 4 4 4 1 12.5 (4) 3 2 4 1 1 17.5 (6) III III II II 22.5 (6) III II III II Secondary Forest 27.5 32.5 37.5 42.5 (6) (6) (6) (6) III III III II III III III II II II II II I I I I I 47.5 (6) III III II I 52.5 (6) III III II 57.5 (6) III IV I I 62.5 67.5 (6) (6) IV III IV III I I I 4 4 3 2 1 3 4 2 2 1 1 1 3 1 4 3 3 2 1 1 3 3 2 1 2 2 I IV IV III II I II II III II II II I II IV III IV II IV II III II III II I IV IV IV II III II II IV III III II III III I III I I II II 1 1 I IV III IV III III II II III III III III III II III I I II IV III IV III III II III III II III II III II II I I 1 I 11.8 3 2 3 1 1 10.0 3 1 3 1 1 I 10.7 III III II II I I 11.5 III I III II II II I 2 2 II II 2 II 1 1 2 I II I I III 1 1 I I I 12.0 III II III II II III III II I I I 13.7 III III III I III I III III II 13.2 IV III II 12.2 III I II I II II II III II II II III I I III II IV IV IV IV II III II III III III II I II III II II I I IV IV IV III IV II II IV I IV II I I III II II IV IV IV III II I III III II II II II I II 13.3 III II II III III II II IV I II I 12.8 IV III II III III I III II II III I 10.5 I III II III II II I II II III III II III II III II I III II III II II I I I II I II III II II IV II I I II II I II II I I II II II II I I I I II I II II I I II I I II II I II I IV IV IV II II III I III I II I I I II I IV IV III II II II II III I I I I I II II III III I I I I I 2 I I II I I I I II I II IV IV IV III III I III IV IV III III II I II II II II I I I 9.7 II III III II III III III II IV II I I I I I II II II I I II I II II 10.0 II III II II III II II I I III II I I I II I II I II I Non-Lucidophyllous Species (54 Species) Supplementary Material 6 (continued) Changes in species composition based on occurrence frequencies. Old-growth Forest Preferring OG 1+2 OG3 OG4 Forest (8) (4) (6) Rhus sylvestris I 1 Ficus erecta I Quercus acutissima I Liliaceae sp. I Cornus controversa 1 Zelkova serrata 1 Rhus ambigua I Pueraria lobata I Rhus succedanea Kalopanax pictus Styrax japonica Broussonetia kazinoki Daphne pseudomezereum Hydrangea paniculata Rhododendron kaempferi Akebia quinata Dioscorea tokoro Cayratia japonica Disporum smilacinum Pinellia ternata Persicaria filiformis Oplismenus undulatifolius Rosa multiflora Ginkgo biloba Onychium japonicum Lygodium japonicum Average Number of Species per Subplot 2.4 3.0 2.7 2.5 (4) 7.5 (4) 12.5 (4) 17.5 (6) 22.5 (6) Secondary Forest 27.5 32.5 37.5 42.5 (6) (6) (6) (6) 47.5 (6) 52.5 (6) 57.5 (6) 62.5 67.5 (6) (6) I I I I I I I I I I I I I I I I I I I I I I I I I 1 I II I I 3.3 3.5 5.0 4.2 5.2 8.2 9.0 9.2 9.0 9.8 I 9.8 7.3 6.8 7.5 Parentheses () indicate the number of quadrats in plots and subplots in the old-growth and secondary forests, respectively. OLD old-growth forest preferring species, SEC secondary forest preferring species, UNC species of unclear preferences, species recorded less than four times. Arabic numerals (four quadrats): 1 appeared once, 2 two times, 3 three times, 4 four times. Roman numerals (six quadrats): I appeared once, II two or three times, III four or five times, IV six times. Roman numerals (eight quadrats): I appeared once or two times, II three or four times, III five or six times, IV seven or eight times. The vertical solid line in the center represents the vegetation border.