Genomics (BIO 294) Laboratory 8, Spring 2011
Laboratory Report Form
Names:
(3) URL for UniProt entry:
(4) Comparison between UniProt, Entrez Gene, and Ensembl:
(8) URL and basic details of structure:
(9) Further details on structure, from PDBsum entry:
(10) Features of Ramachandran plot for your protein:
(19a) Questions about aromatic amino acids
(19b) Questions about di-sulfide bridges
(19c) Questions about R groups in alpha helices and pleated sheets
(19d) Questions about visualizing the active site(s)
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(19e) Questions about gaps in packing of amino acids
(28) Conserved domains and functional annotations in your protein
(30) Description of the domain you are exploring
(42) Directionality of R groups in helices and sheets
(45) Fine analysis of conservation in your protein
(46a) Distribution of amino acids associated with first functional annotation
(46b) Conservation of amino acids associated with first functional annotation
(46c) Conservation of amino acid chemistry in first functional annotation
(46d) Structural analysis of first functional annotation
(46a) Distribution of amino acids associated with second functional annotation
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(46b) Conservation of amino acids associated with second functional annotation
(46c) Conservation of amino acid chemistry in second functional annotation
(46d) Structural analysis of second functional annotation
(46a) Distribution of amino acids associated with third functional annotation
(46b) Conservation of amino acids associated with third functional annotation
(46c) Conservation of amino acid chemistry in third functional annotation
(46d) Structural analysis of third functional annotation
(49) Notes in preparation for post-lab discussion
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