DNA Structure/Replication & Protein Synthesis DNA Structure and how it is arranged was determined through the efforts of a number of scientists. 3 of the most important of these scientists and their contributions are: 1. Erwin Chargaff: a. CHARGAFF’S RULE: DNA strands pair with their COMPLIMENTARY (matching) STRAND; A=T and G=C b. Adenine always pairs with Thymine, and Guanine always pairs with Cytosine c. The percentage of Adenine therefore must equal the percentage of Thymine and the percentage of Guanine must equal the percentage of Cytosine i. %A = %T------%G = %C %A + %T + %G + %C = 100% 2. James Watson and Francis Crick: a. Determined that DNA was shaped as a DOUBLE HELIX and created a model of the DNA molecule b. Helix= a 3D twisting/curved shape i. DNA has two twisting strands much like a twisted ladder, hence, DOUBLE HELIX 3. Rosalind Franklin: a. Known for Photo 51 taken using X-Ray Crystallography b. Photo 51 The scientific community knew that DNA resembled a ladder, but PHOTO 51 provided the last clue that DNA was actually a TWISTED LADDER (Double Helix) DNA Structure DNA stands for Deoxyribonucleic acid and it is a NUCLEIC ACID composed of NUCLEOTIDES DNA NUCLEOTIDE: 3 Parts 1. Phosphate Group: represented by a circle in the “rails” of the ladder 2. Deoxyribose (sugar in DNA): represented by a pentagon 3. Base/Nitrogen Base/Nitrogenous Base: pairs form the “rungs” of the ladder, either A, T, C, or G in DNA! Purine: 2-ring base A & G Pyrimidine: 1-ring base T & C ******In DNA, The Sugar is DEOXYRIBOSE****** 1. The BACKBONE: composed of alternating Phosphates and Deoxyriboses 2. The RUNGS: composed of nitrogenous bases joined by HYDROGEN BONDS DNA Replication ***DNA perfectly replicates itself in a semi-conservative way*** “Semi”= Half + “Conservative”= Saving “Half-Saving” DNA replicates in such a manner that from one “parent” molecule of DNA, two IDENTICAL “daughter” molecules are producedeach containing one of the parent strands and one new strand of DNA Protein Synthesis CENTRAL DOGMA: describes how the information stored in DNA is accessed and used by an organism DNARNAPROTEIN Replication….Transcription&Translation....Gene Expression Protein Synthesis relies on another nucleic acid very similar to DNA…RNA!! RNA, RIBONUCLEIC ACID, is similar to DNA but with a few key differences: o RNA contains the pyrimidine URACIL (U) instead of THYMINE (T) o RNA contains the sugar RIBOSE instead of DEOXYRIBOSE o RNA is SINGLE-STRANDED while DNA is DOUBLE-STRANDED o RNA has 3 TYPES while DNA has ONLY ONE mRNA- messenger RNAcopy of DNA segment created in transcription and “read” by ribosome to make protein in translationfound in nucleus and cytoplasm tRNA- transfer RNAcarries amino acids to add to protein chain at the ribosomefound in cytoplasm rRNA- ribosomal RNAsite of translationfound in cytoplasm TRANSCRIPTION: Genetic information is copied from DNA onto a COMPLIMENTARY RNA strand in the Nucleus mRNA is complimentary to the target DNA sequence o EX. DNA: TACGGGACT RNA: AUGCCCUGT o NOTE!! U replaces T in the complimentary base pairing because it RNA not DNA TRANSLATION: mRNA moves from the NUCLEUS into the CYTOPLASM and heads to a RIBOSOME where the genetic information copied from the DNA is “read” to manufacture a specific PROTEIN rRNA “reads” the mRNA in groups of 3 bases known as CODONS o CODON: sequence of 3 bases that codes for a specific amino acid tRNA molecules bring amino acids to the ribosome one-at-a-time and in a specific order and add to a growing protein chain o each tRNA carries ONE amino acid and matches up with the right spot of the mRNA sequence using ANTICODONS o ANTICODON: group of 3 bases that is complimentary to a codon on an mRNA strand…so the ORDER OF CODONS ON THE mRNA determines the order that tRNAs add amino acids Let’s take a look at an example that follows a gene being expressed for the DNA to the Protein: DNA Sequence: TACAACGACTTAGCTTAGATT Step 1: Let’s separate the sequence into codons (groups of 3) TAC AAC GAC TTA GCT TAG ATT Step 2: Now let’s create the complimentary mRNA sequence AUG UUG CUG AAU CGA AUC UAA Step 3: Now, so I don’t make a mistake, I am going to use my codon chart and see what amino acid sequence these mRNA CODONS code for (remember the amino acid sequence is determined by the CODONS on the mRNA…NOT the ANTICODONS on the tRNA) Methionine-Leucine-Leucine-Asparagine-Arginine-Isoleucine-Stop Step 4: Now that I know I have translated my mRNA codon sequence correctly, I will determine the tRNA anticodon sequence that would shuttle these amino acids to the ribosome UAC AAC GAC UUA GCU UAG AUU **Notice the anticodon sequence is the same as the original DNA sequence except there are U’s instead of T’s (because it is RNA!)** IMPORTANT!! Remember the mRNA codon AUG codes for the amino acid methionine and is the START codon…UAA, UAG, and UGA code for NO amino acid and are the STOP codons Mutations: A change in the nucleotide sequence, and, thus, the genetic code of an organism. Can be caused by radiation (UV, X-Ray, Gamma, etc.), chemicals, random replication errors, and other environmental factors Can benefit, harm, or have no impact on an organism and/or its offspring/species Types to know: 1. Insertion: a nucleotide is added to the existing nucleotide sequence EX. ATTT become ATTTC 2. Deletion: a nucleotide is taken out of the existing nucleotide sequence EX. GGCT become GCT 3. Substitution: a nucleotide is switched in the existing nucleotide sequence EX. AATG becomes TATG 4. Inversion: a mutation in which a segment of DNA is reversed endto-end EX AGTT flips to form TTGA **When trying to determine the type of mutation, it is helpful to start with comparing the number of bases, and then reading the sequence left to right and comparing** Substitution Deletion Insertion Inversion