Supplementary Information: Methods Experimental Design: Immune Gene Assay 6:00 AM replicate 1 18 C +0C +6C 26 C +0C +6C replicate 2 32 C +0C +6C 18 C +0C +6C 26 C +0C +6C 32 C +0C +6C unmanipulated 20 20 20 20 20 20 20 20 20 20 20 20 injury 20 20 20 20 20 20 20 20 20 20 20 20 heat-killed E. coli 20 20 20 20 20 20 20 20 20 20 20 20 6:00 PM replicate 1 18 C +0C +6C 26 C +0C +6C replicate 2 32 C +0C +6C 18 C +0C +6C 26 C +0C +6C 32 C +0C +6C unmanipulated 20 20 20 20 20 20 20 20 20 20 20 20 injury 20 20 20 20 20 20 20 20 20 20 20 20 heat-killed E. coli 20 20 20 20 20 20 20 20 20 20 20 20 We randomly assigned a total of 1440 female, 3-day old mosquitoes to remain either unmanipulated (negative control, n = 480) or to be injected with either 0.2 µL of sterile LB broth (positive control, n = 480) or 0.2 µL heat-killed Escherechia coli (200,000 bacteria per dose, n = 480). After being anesthetized on ice and challenged, mosquitoes were distributed into cups (n = 20) and placed into one of 12 reach-in incubators consisting of three temperature treatments (18oC, 26oC, 32oC), two diurnal fluctuation treatments (+0oC and +6oC), and two replicates. This experiment was conducted twice, starting at 6:00 AM and at 6:00 PM, to evaluate the effects of time of day and any interactions between time of day and our temperature treatments on mosquito immune gene expression and daily mortality. Experimental Design: Mosquito Resistance Assay 6:00 AM replicate 1 18 C +0C +6C 25 25 26 C +0C +6C 25 25 replicate 2 32 C +0C +6C 25 25 18 C +0C +6C 25 25 26 C +0C +6C 25 25 32 C +0C +6C 25 25 6:00 PM replicate 1 18 C +0C +6C 25 25 26 C +0C +6C 25 25 replicate 2 32 C +0C +6C 25 25 18 C +0C +6C 25 25 26 C +0C +6C 25 25 32 C +0C +6C 25 25 We injected a total of 600 female, 3-day old mosquitoes with 0.2 µL live E. coli (2,000 bacteria per dose). After being anesthetized on ice and infected, mosquitoes were distributed into cups (n = 25) and placed into one of 12 reach-in incubators consisting of three temperature treatments (18oC, 26oC, 32oC), two diurnal fluctuation treatments (+0oC and +6oC), and two replicates. This experiment was conducted starting at 6:00 AM and at 6:00 PM to evaluate the effects of time of day and any interactions between time of day and our temperature treatments on mosquito resistance to bacterial growth and daily mortality. Parton-Logan Curves for the Diurnal Temperature Fluctuation Treatments The diurnal temperature model: The Parton-Logan model, characterized by a sinusoidal progression during the daytime and a decreasing exponential curve during the night is a good representation of both the phase and form of natural diurnal temperature rhythms. 𝑇 = 𝑇𝑚𝑖𝑛 + (𝑇𝑚𝑎𝑥 − 𝑇𝑚𝑖𝑛 )𝑠𝑖𝑛 (𝜋 𝐷 𝑡 − 12 + 2 𝐷 + 2𝑝 ) ; 𝑡𝑟𝑖𝑠𝑒 ≤ 𝑡 ≤ 𝑡𝑠𝑒𝑡 −𝑁 −(𝑡 − 𝑡𝑠𝑒𝑡 ) 𝑇𝑚𝑖𝑛 − 𝑇𝑠𝑒𝑡 exp ( 𝜏 ) + (𝑇𝑠𝑒𝑡 − 𝑇𝑚𝑖𝑛 )𝑒𝑥𝑝 ( ) 𝜏 𝑇= ; 𝑡𝑠𝑒𝑡 ≤ 𝑡 ≤ 𝑡𝑟𝑖𝑠𝑒 −𝑁 1 − 𝑒𝑥𝑝 ( 𝜏 ) where Tmin and Tmax (oC) are the minimum and maximum daily air temperatures, t (hrs) the time, D (hrs) the day length, p (1.5 hr) the time duration between solar noon and Tmax, trise (hrs) the time of sunrise, tset (hrs) the time of sunset, Tset (oC) the temperature at sunset, N (hrs) the duration of the night, and τ the nocturnal time constant. The following parameters were set at these values for each fluctuation around a mean of 18oC, 26oC, and 32oC: Tmin = 12oC, 20oC, and 26oC trise = 6 hrs; 6:00 AM Tmax = 24oC, 32oC, and 38oC tset = 18 hrs; 6:00 PM D = 12 hrs p = 1.5 hrs N = 12 hrs τ =4 We then programmed the diurnally fluctuating incubators with temperatures generated from the above model across various time points in a 24 hr period of time (plots for the program of each incubator are included below). Incubator Programs: Actual model 40 Incubator program 35 temperature (oC) 30 25 20 mean ambient temperature 18oC 15 10 5 0 0 2 4 6 8 10 12 14 16 18 20 22 24 Actual model 40 Incubator program 35 temperature (oC) 30 mean ambient temperature 26oC 25 20 15 10 5 0 0 2 4 6 8 10 12 14 16 18 20 22 24 Actual model 40 Incubator program 35 mean ambient temperature 32oC temperature (oC) 30 25 20 15 10 5 0 0 2 4 6 8 10 12 14 16 18 hours during the day (hrs) 20 22 24 Supplementary Information Results: Table 1 Final results from generalized linear model analysis of mosquito mortality from the gene expression assay. Significant effects for each factor are in bold (p < 0.05), and dashes indicate higher order interactions that were eliminated from the full model. mosquito mortality (n = 72) Wald X 2 d.f. p - value intercept 12.01 1 0.001 time of day 0.22 1 0.638 temperature 9.46 2 0.009 fluctuation 0.62 1 0.432 immune challenge 14.15 2 0.001 replicate 0.07 1 0.793 time of day x temperature 7.49 2 0.024 factors Overall, mosquito death was minimal in the gene assay experiment. However, immune challenging mosquitoes in general did increase the number of dead mosquitoes (unmanipulated vs. injury, p < 0.0001; unmanipulated vs. heat-killed E. coli, p < 0.0001; injury vs. heat-killed E. coli, p = 0.686). Similar to the mortality observed in the mosquito resistance assay, more mosquitoes died when they were challenged with heat-killed E. coli in the morning and placed into a warm environment than mosquitoes challenged in the morning and placed into a cool environment (6:00 AM, 18oC vs. 32oC p = 0.026). Further, the effect of mean ambient temperature on mosquito mortality was no longer significant when mosquitoes were challenged in the evening (Fig SI 1). Figure SI 1 Mosquito mortality due to immune challenge was significantly affected by changes in mean ambient temperature and time of day (6:00 AM, black line; 6:00 PM, red line) challenge was administered. mean no. dead mosquitoes 1.6 1.4 1.2 1.0 0.8 6:00 AM 0.6 6:00 PM 0.4 0.2 0.0 18 C 26 C temperature 32 C (oC)