Supporting Information Appendix S1. Growth.-The von Bertalanffy growth model (von Bertalanffy 1938) was used to estimate agestandard length growth curves using the following equation: πΈπ. 1 πΏπ‘ = πΏ∞ ∗ 1 − π −π(π‘−π‘0 ) where πΏπ‘ is the length at age t, πΏ∞ is the asymptotic length, also known as the mean maximum length, π is the growth coefficient and π‘0 is the age where length = 0 (Ricker 1975). For growth in weight, slope coefficients (b) of the weight-standard length relationship were extracted using a power function and the von Bertalanffy growth model was applied to weight. We used population-specific relationships between length and weight and calculated the von Bertalanffy growth function for weight according to Ricker (1975): πΈπ. 2 ππ‘ = π∞ ∗ [1 − π −π(π‘−π‘0 ) ]π where ππ‘ is the weight at age t, π∞ is the asymptotic weight, π is the growth coefficient and π‘0 is the age where weight = 0. Growth in weight was analyzed in addition to growth in length because of the ecological importance of mass and the differences in absolute and relative growth for length and mass as fish mature (Van Den Avyle & Hayward 1999). References von Bertalanffy, L.. (1938) A quantitative theory of organic growth. Human Biology, 10, 181213. Den Avyle, M. Van & Hayward, R.S. (1999) Dynamics of Exploited Fish Populations. Inland Fisheries and Management in North America. pp. 127-166. American Fisheries Society, Bethesda, Maryland, USA. Ricker, W.E. (1975) Computation and Interpretation of Biological Statistics of Fish Populations (Bulletin). The Blackburn Press. Tables Table S1. Linear correlations with lake Secchi depth. Results from linear correlations (Pearson) between 5-year summer mean secchi depth and mean values of a suite of limnological, bathymetric and biological variables. Column headings also indicate the 95% confidence interval and P-value (P). Parameter Total Nitrogen (µg L-1) Total Phosphorus (µg L-1) Lake Area Above 5 Meters (%) Daphnia Average Length (mm) Daphnia Average Dry Mass (µg) Lake Area Above 4 Meters (%) Mean Lake Depth (m) Lake Area Above 3 Meters (%) Maximum Lake Depth (m) Zooplankton Density (# L-1) Lake Area Above 2 Meters (%) Principal Component 2 (Zooplankton) Lake Area Above 1 Meter (%) Principal Component 1 (Fish) Flushing Rate (Times per Year) Chlorophyll-a (mg m3) Zooplankton Average Dry Mass (µg) Zooplankton Average Length (mm) Hypolimnion DO (mg L-1) Direct Drainage Area (Ha) Perimeter (m) Hypolimnion Temperature (°C) Shoreline Sinuosity Index Lake Area (m) Principal Component 1 (Zooplankton) Total Nitrogen:Total Phosphorus Littoral Habitat (%) Principal Component 2 (Fish) Daphnia density (# L-1) Lower Upper Pearson 95% 95% Correlation CI CI -0.90 -0.98 -0.59 -0.82 -0.96 -0.33 -0.74 -0.94 -0.16 0.74 0.16 0.94 0.74 0.16 0.94 -0.71 -0.93 -0.09 0.69 0.05 0.93 -0.68 -0.93 -0.04 0.68 0.03 0.93 -0.66 -0.92 0.00 -0.66 -0.92 0.01 -0.65 -0.92 0.02 -0.63 -0.91 0.06 0.61 -0.09 0.91 -0.60 -0.91 0.10 -0.53 -0.88 0.20 0.51 -0.24 0.88 0.48 -0.27 0.87 0.45 -0.31 0.86 -0.45 -0.86 0.31 0.42 -0.34 0.85 -0.41 -0.84 0.35 0.39 -0.37 0.84 0.31 -0.44 0.81 -0.31 -0.81 0.45 0.26 -0.49 0.79 -0.23 -0.78 0.51 -0.19 -0.76 0.54 0.12 -0.59 0.73 P 0.01 0.01 0.02 0.02 0.02 0.03 0.04 0.04 0.04 0.05 0.05 0.06 0.07 0.08 0.09 0.14 0.17 0.19 0.22 0.23 0.27 0.27 0.30 0.41 0.42 0.49 0.55 0.63 0.76 Table S2. ANCOVA results for various fish traits associated with body shape, fin dimensions and trophic (feeding) ecology. Log standard length (cm) was included as a main effect and interaction term. Where interaction terms are not significant, reported results are from an analysis of variance with population source and log standard length as main effects. Parameter Body Shape and Fin Variation Canonical Axis 1: Body Shape Relative Warp 2: Body Shape Relative Warp 5: Body Shape Relative Warp 10: Body Shape Body Depth Caudal Filament Length (cm) Pectoral Fin Length (cm) Pelvic Fin Length (cm) Caudal Peduncle Width (cm) Wet Weight (g) Trophic Morphology Canonical Axis 1: Head Shape Canonical Axis 2: Head Shape Canonical Axis 3: Head Shape Relative Warp 2: Head Shape Relative Warp 1: Head Shape Relative Warp 4: Head Shape Mouth Width (cm) Gape (cm) Opercle Bone Length (cm) Eye Width (cm) Gill Raker Number Gill Raker Length (mm) Gill Raker Spacing (mm) Gill Raker Width (mm) n Whole Model F(19 or 10) P r2 Population Source F(9) P r2 F(1) Size P r2 F(9) Source*Size P r2 1,520 1,520 1,520 1,520 1,520 1,520 1,520 1,520 1,520 1,520 350.7 157.4 42.9 61 7,440.5 702.1 2205.8 1749.2 724.8 12482.2 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 0.81 0.66 0.34 0.43 0.99 0.9 0.96 0.96 0.9 0.99 404.2 170 51.9 88.9 227 67.9 91.3 76.4 7.8 118.7 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 0.8 0.54 0.63 0.39 0.04 0.13 0.06 0.06 0.01 0.01 11 288.4 12.6 18.8 43040.7 3426 12240 9806.5 4207.9 73144.3 0.001 < 0.001 0.004 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 < 0.01 0.1 0.02 0.01 0.94 0.75 0.9 0.89 0.86 0.97 7.9 6.5 1 5.9 10.7 9 11.3 2.6 13 17 < 0.001 < 0.001 0.425 < 0.001 < 0.001 < 0.001 < 0.001 0.005 < 0.001 < 0.001 0.02 0.02 0 0.03 < 0.01 0.02 0.01 0 0.2 < 0.01 1,520 1,520 1,520 1,520 1,520 1,520 1,435 1,519 1,520 1,520 1,435 1,435 1,435 1,435 163.8 100.2 61.7 108.8 63 34.2 1275.3 1448.8 3553.8 728.7 25.7 809.3 67 599.4 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 0.67 0.55 0.43 0.57 0.43 0.29 0.94 0.95 0.98 0.9 0.16 0.92 0.48 0.89 84 132.6 2.7 137.4 102.8 4.9 49.8 36.8 42.2 72.5 28.5 15.6 22.5 50.4 < 0.001 < 0.001 0.101 < 0.001 < 0.001 0.028 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 0.6 0.45 0 0.54 0.32 0.26 0.04 0.04 0.02 0.11 0.16 0.03 0.21 0.09 188.1 0.1 79.4 21.9 50.9 32.8 9020.9 8489.7 20716.1 4477.5 3.4 4411.7 176.4 4060.2 < 0.001 0.864 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 0.067 < 0.001 < 0.001 < 0.001 0.03 < 0.01 0.41 0.01 0.07 0 0.89 0.91 0.96 0.78 0 0.88 0.19 0.77 10.6 3.3 4.3 5.1 6.2 3.3 6 2.8 1.2 4.7 0.9 4.4 7.8 19.5 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 < 0.001 0.003 0.26 < 0.001 0.52 < 0.001 < 0.001 < 0.001 0.03 0.1 0.02 0.02 0.04 0.03 0.01 < 0.01 0 0.01 0 0.01 0.07 0.03 Table S3. Proportional representation of prey in fish diets across lakes. The number of stomachs analyzed and the number empty are indicated for each population. Prey values are population means for each prey item represented as a proportion of each on a wet mass basis. Values in parentheses are standard deviations. Cold Stream Brewer Maranacook North East Pushaw Umbazooksus Hermon Unity Merrymeeting Average # Analyzed 48 50 50 55 53 51 53 47 49 52 # Empty 40 10 3 2 2 3 15 8 25 24 Amphipoda 0.13 (0.35) 0.04 (0.16) 0.14 (0.29) 0.16 (0.22) 0.16 (0.31) 0.08 (0.19) 0 0 0.21 (0.36) 0 0.09 Fish 0 0 0.02 (0.14) 0 0.04 (0.19) 0.04 (0.17) 0.02 (0.15) 0 0 0.14 (0.35) 0.03 5 Benthic Invert. 0.78 (0.41) 0.27 (0.40) 0.65 (0.42) 0.81 (0.25) 0.72 (0.40) 0.80 (0.31) 0.64 (0.46) 0.55 (0.45) 0.76 (0.38) 0.40 (0.49) 0.64 Daphnia 0 0.02 (0.07) 0.10 (0.25) 0.02 (0.14) 0.06 (0.24) 0.07 (0.21) 0.32 (0.44) 0 0 0 0.06 Other Zooplankton 0 0.04 (0.17) 0.08 (0.17) 0 0.01 (0.07) 0.02 (0.05) 0.02 (0.05) 0.05 (0.14) 0 0 0.02 Terrestrial 0.09 (0.26) 0.64 (0.46) 0.02 (0.11) 0.01 (0.06) 0 0 0 0.40 (0.48) 0.02 (0.12) 0.46 (0.50) 0.16 Table S4. Results from AIC (corrected) model selection of white perch δ15N by individual traits values. Results displayed are the top models with 6 or fewer parameters which best predicted δ15N; more parameters were included initially, but additional parameters resulted in small (< 0.01) increases in r2. Model # r2 AICc Population, Raker Length, Length, CA 1 Population, Raker Length, Raker Width, Length, CA 1 Population, Raker Length, Raker Spacing, Length, CA 1 Population, Raker Length, Pelvic Fin Length, Length, CA 1 Population, Raker Length, Raker Width, Opercle Length, Length, CA 1 Population, Raker Length, Raker Width, Eye Width, Length, CA 1 Population, Raker Length, Raker Width, Raker Spacing, Length, CA 1 Population, Raker Length, Opercle Length, CA 1 Population, Raker Length, Mouth Width, CA 1 Population, Eye Width, CA 1 Population, Length, CA 1 Population, Mouth Width, CA 1 Population, Eye Width Population, Raker Width Population, CA 1 Population CA 1 Mouth Width 4 5 5 5 6 6 6 4 4 3 3 3 2 2 2 1 1 1 0.73 0.73 0.73 0.73 0.73 0.73 0.73 0.72 0.72 0.71 0.71 0.70 0.68 0.68 0.68 0.65 0.31 0.16 535.69 535.97 537.34 537.44 537.52 537.66 537.89 541.36 542.88 551.76 552.63 553.59 567.59 568.38 570.78 588.59 743.22 791.38 6 Table S5. Results from a von Bertalanffy growth model for both length and weight where πΏπ‘ is the length at age t, πΏ∞ is the asymptotic length, also known as the mean maximum length, π is the growth coefficient, π‘0 is the age when length = 0 and π is the slope of the length-weight relationship. Model parameters for weight (W) are also reported. Pond Brewer Cold Stream East Hermon Maranacook Merrymeeting North Pushaw Umbazooksus Unity Pooled n L∞ k (L) t0 (L) W∞ k (W) t0 (W) b 51 47 51 45 49 48 46 47 48 45 477 33.75 37.33 35.56 19.70 22.83 27.10 23.90 24.99 40.85 22.34 29.99 0.08 0.06 0.11 0.18 0.16 0.16 0.23 0.15 0.07 0.12 0.11 -2.46 -4.28 -1.10 -2.03 -4.57 -1.64 -0.49 -1.76 -2.70 -3.61 -2.34 305.04 463.60 637.28 224.33 198.14 545.14 304.43 223.25 503.44 182.27 572.54 0.15 0.15 0.21 0.14 0.33 0.14 0.24 0.24 0.15 0.20 0.13 -0.93 -1.23 0.61 -3.02 -1.00 -1.93 -0.26 -0.79 -1.12 -1.10 -1.08 3.11 3.23 2.73 3.08 3.05 3.08 3.06 3.11 2.80 3.03 3.03 7 Table S6. Results from multivariate correlation between a suite of white perch morphological traits from 10 populations. Correlations were calculated based on ANCOVA-derived LS Means. Significant univariate correlations are indicated by ** (< 0.05) and * (< 0.10). Average correlation is indicated in the last row. Parameter Canonical Axis 1 Pectoral Fin Length Pelvic Fin Length Caudal Fin Length Mouth Gape Mouth Width Opercle Length Raker Spacing Raker Length δ15N Avg. Corr. CA 1 1 0.70** 0.73** 0.64** 0.54* 0.62* 0.82** 0.51 0.83** 0.66** 0.69 Pect. 0.70** 1 0.86** 0.48 0.38 0.66** 0.32 0.21 0.65** 0.36 0.53 Pelv. 0.73** 0.86** 1 0.35 0.19 0.72** 0.32 0.40 0.66** 0.56* 0.54 Caud. 0.64** 0.48 0.35 1 0.82** 0.43 0.36 0.57 0.22 0.48 0.49 Gape 0.54* 0.38 0.19 0.82** 1 0.14 0.45 0.52 0.38 0.35 0.42 8 Mouth 0.62* 0.66** 0.72** 0.43 0.14 1 0.38 0.06 0.32 0.36 0.44 Oper. 0.82** 0.32 0.32 0.36 0.45 0.38 1 0.29 0.77** 0.46 0.48 Raker S 0.51 0.21 0.40 0.57* 0.52 0.06 0.29 1 0.33 0.82** 0.40 Raker L 0.83** 0.65** 0.66** 0.22 0.38 0.32 0.77** 0.33 1 0.47 0.53 δ15N 0.81** 0.55* 0.69** 0.53 0.41 0.62* 0.66** 0.67** 0.63* 1 0.62 Figures Figure S1. Map showing the location of 9 lentic and 1 estuarine population (Merrymeeting Bay) of white perch in the state of Maine, USA. 9 Figure S2. Outline of white perch showing 21 homologous landmarks used for multivariate analysis of body and head shape. Landmarks were chosen to represent the body outline, insertion of fins, dimensions of the operculum, depth of the caudal peduncle and position of the mouth and maxilla. 10 Figure S3. Age-standard length (cm)/wet weight (g) von Bertalanffy growth curves for 10 populations of white perch. 11